Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 1.4e-148 529.6 271 100.0
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 4.8e-61 238.8 286 52.8
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 2.4e-60 236.5 283 50.2
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.1e-57 227.6 294 48.0
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 9.5e-57 224.6 283 48.1
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 9.5e-57 224.6 281 47.3
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 4.7e-56 222.2 283 48.1
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 1.8e-55 220.3 279 51.3
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 2.0e-54 216.9 299 47.2
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 3.4e-54 216.1 275 49.1
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.8e-52 210.3 281 46.6
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 3.5e-51 206.1 267 47.9
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 3.5e-51 206.1 282 46.1
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 7.8e-51 204.9 352 40.3
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 5.0e-50 202.2 281 43.8
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 4.3e-49 199.1 283 45.6
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 2.8e-48 196.4 280 43.9
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 6.1e-48 195.3 317 41.0
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 3.0e-47 193.0 279 43.4
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 4.0e-47 192.6 281 43.1
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 8.9e-47 191.4 279 41.2
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 1.2e-46 191.0 287 42.2
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.5e-46 190.7 285 41.8
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 2.0e-46 190.3 281 42.0
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 5.8e-46 188.7 288 42.4
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 7.5e-46 188.3 285 41.4
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 9.8e-46 188.0 285 41.4
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 2.2e-45 186.8 373 37.5
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 2.9e-45 186.4 284 42.6
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 2.9e-45 186.4 291 39.5
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 3.7e-45 186.0 279 41.6
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 4.1e-44 182.6 291 41.6
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 4.1e-44 182.6 287 39.0
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 5.4e-44 182.2 258 44.2
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 2.0e-43 180.3 283 41.7
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 4.6e-43 179.1 286 39.2
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 7.8e-43 178.3 288 40.6
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 1.3e-42 177.6 163 62.0
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 2.3e-42 176.8 280 38.6
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 3.0e-42 176.4 287 40.4
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 3.9e-42 176.0 285 39.3
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 1.9e-41 173.7 278 41.4
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 3.3e-41 172.9 290 41.4
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 7.3e-41 171.8 279 40.9
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 1.8e-39 167.2 228 44.3
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 2.3e-39 166.8 229 43.7
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 3.1e-39 166.4 282 36.5
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 1.2e-38 164.5 194 51.0
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 5.8e-38 162.2 286 39.5
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 7.5e-38 161.8 281 38.1
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 7.5e-38 161.8 281 38.1
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 7.5e-38 161.8 290 37.9
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 9.8e-38 161.4 232 43.1
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 1.3e-37 161.0 283 37.1
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.9e-37 159.8 232 43.1
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 4.9e-37 159.1 257 42.0
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 6.4e-37 158.7 207 47.8
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 8.3e-37 158.3 282 36.5
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 1.9e-36 157.1 279 36.9
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 9.2e-36 154.8 285 38.6
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 1.6e-35 154.1 279 37.3
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 3.5e-35 152.9 278 36.3
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 3.5e-35 152.9 316 40.2
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 3.5e-35 152.9 229 45.4
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 4.6e-35 152.5 268 40.7
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 1.3e-34 151.0 332 35.2
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 2.3e-34 150.2 217 42.9
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 3.9e-34 149.4 229 45.4
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 3.9e-34 149.4 332 34.9
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.1e-33 147.9 277 34.7
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 1.9e-33 147.1 292 37.7
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 9.5e-33 144.8 236 37.7
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 1.6e-32 144.1 282 36.9
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 3.6e-32 142.9 201 44.3
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 3.6e-32 142.9 201 44.3
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 3.6e-32 142.9 280 35.4
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 4.7e-32 142.5 286 37.1
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 4.7e-32 142.5 238 41.2
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 6.2e-32 142.1 278 36.7
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 6.2e-32 142.1 239 38.9
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 8.1e-32 141.7 227 41.0
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 2.3e-31 140.2 277 35.7
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 2.3e-31 140.2 255 40.0
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 2.3e-31 140.2 290 33.4
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 3.1e-31 139.8 393 30.8
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 4.0e-31 139.4 289 33.2
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 5.2e-31 139.0 238 40.8
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 8.9e-31 138.3 275 34.9
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 8.9e-31 138.3 275 34.9
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 8.9e-31 138.3 238 40.8
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 1.2e-30 137.9 206 42.2
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 1.2e-30 137.9 283 39.6
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 5.8e-30 135.6 279 33.3
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 7.5e-30 135.2 244 39.3
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 9.9e-30 134.8 226 40.3
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 1.3e-29 134.4 275 34.2
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.3e-29 134.4 200 42.0
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 1.3e-29 134.4 188 46.8
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.7e-29 134.0 379 30.9
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 1.7e-29 134.0 289 32.5
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 2.9e-29 133.3 221 39.4
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 8.3e-29 131.7 203 41.9
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 1.1e-28 131.3 293 35.5
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 1.1e-28 131.3 311 35.0
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 1.4e-28 131.0 275 33.8
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 1.4e-28 131.0 275 33.5
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 2.4e-28 130.2 181 43.6
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 5.4e-28 129.0 347 32.6
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 1.6e-27 127.5 209 41.6
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 2.1e-27 127.1 208 41.3
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 2.7e-27 126.7 280 32.1
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 2.7e-27 126.7 165 44.2
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 6.0e-27 125.6 261 37.9
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 7.8e-27 125.2 208 40.9
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 7.8e-27 125.2 228 38.2
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 3.0e-26 123.2 215 39.1
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 6.6e-26 122.1 257 34.6
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 3.3e-25 119.8 232 35.8
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 1.2e-24 117.9 192 45.8
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 4.7e-24 115.9 176 43.8
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 2.4e-23 113.6 160 40.6
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 4.0e-23 112.8 281 31.3
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 4.0e-23 112.8 209 37.8
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 6.8e-23 112.1 205 37.6
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 4.4e-22 109.4 250 33.2
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 4.4e-22 109.4 180 41.1
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 1.4e-20 104.4 173 38.2
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 1.3e-18 97.8 269 31.2
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 3.9e-18 96.3 214 34.6
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 6.6e-18 95.5 295 28.8
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 1.1e-17 94.7 291 27.5
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 1.9e-17 94.0 192 33.9
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 1.2e-16 91.3 294 29.9
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 6.2e-16 89.0 291 27.1
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 1.2e-14 84.7 74 59.5
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 7.1e-12 75.5 69 56.5
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 3.5e-11 73.2 165 33.9
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 3.0e-10 70.1 275 27.6
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 5.1e-10 69.3 82 50.0
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 3.3e-09 66.6 90 44.4
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 8.1e-08 62.0 118 37.3
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 8.1e-08 62.0 99 40.4
Dinv03808 Davidia involucrata HOM05D005413 ORTHO05D006536 2.4e-07 60.5 95 40.0
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 2.0e-06 57.4 145 32.4
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 3.4e-06 56.6 73 43.8


User provided reference genes

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