Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 0.0e+00 1273.1 666 100.0
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 4.6e-262 907.9 679 73.9
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 2.6e-249 865.5 691 71.1
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 1.9e-244 849.4 716 68.9
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 8.9e-242 840.5 724 67.4
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 9.9e-241 837.0 724 67.0
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 2.3e-237 825.9 724 66.6
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 6.2e-150 535.4 687 50.5
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 3.1e-149 533.1 686 50.4
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 1.8e-133 480.7 719 45.8
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 3.6e-126 456.4 717 44.8
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 1.2e-121 441.4 712 44.1
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 3.9e-120 436.4 737 43.1
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 8.7e-120 435.3 723 43.6
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 1.9e-119 434.1 796 40.8
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 3.1e-117 426.8 793 41.4
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 1.3e-115 421.4 750 40.7
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 4.2e-114 416.4 763 41.4
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 2.7e-113 413.7 825 38.9
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 1.5e-111 407.9 746 41.2
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 4.8e-110 402.9 714 42.0
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 6.2e-110 402.5 716 43.7
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 1.4e-109 401.4 592 47.1
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 6.9e-109 399.1 715 40.0
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 1.5e-108 397.9 583 46.5
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 2.0e-108 397.5 711 43.0
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 2.6e-108 397.1 611 45.7
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 1.1e-106 391.7 761 39.7
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 1.9e-106 391.0 733 42.4
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 2.4e-106 390.6 583 46.5
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 1.6e-102 377.9 713 42.4
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 2.1e-102 377.5 710 42.0
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 4.8e-102 376.3 705 42.0
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 1.1e-101 375.2 688 41.0
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 9.0e-101 372.1 707 41.6
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 1.0e-99 368.6 733 39.0
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 3.8e-99 366.7 717 40.4
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 5.5e-98 362.8 602 43.7
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 4.6e-97 359.8 716 40.8
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 5.7e-95 352.8 666 41.7
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 1.1e-93 348.6 726 40.6
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 1.2e-92 345.1 601 43.4
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 2.6e-92 344.0 606 42.7
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 5.9e-92 342.8 704 39.2
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 1.4e-90 338.2 666 41.1
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 1.6e-89 334.7 654 38.8
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 3.3e-87 327.0 696 39.9
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 5.7e-87 326.2 659 39.2
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 4.8e-86 323.2 701 39.7
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 2.0e-84 317.8 686 38.3
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 4.5e-84 316.6 771 35.5
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 1.7e-83 314.7 710 36.8
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 1.1e-82 312.0 720 36.8
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 9.4e-82 308.9 642 38.8
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.6e-81 308.1 752 36.7
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 6.1e-81 306.2 579 41.3
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 2.0e-79 301.2 694 38.3
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 4.2e-74 283.5 644 36.6
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 4.7e-73 280.0 726 34.6
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 4.7e-73 280.0 696 36.1
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 4.7e-73 280.0 794 34.3
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 1.4e-72 278.5 718 35.8
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 1.4e-72 278.5 677 37.2
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 2.3e-72 277.7 693 36.7
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 6.7e-72 276.2 677 36.5
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 2.2e-70 271.2 600 38.0
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 3.7e-70 270.4 651 36.4
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 4.8e-70 270.0 694 35.4
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 1.6e-68 265.0 465 44.1
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 1.0e-67 262.3 623 38.4
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.3e-67 261.9 672 36.0
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 3.0e-64 250.8 294 54.4
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 7.5e-63 246.1 657 34.9
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 2.2e-62 244.6 780 31.5
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 2.8e-62 244.2 536 37.9
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 3.7e-62 243.8 510 39.4
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 1.6e-60 238.4 354 46.0
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 4.5e-60 236.9 719 32.8
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 2.2e-59 234.6 628 35.8
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 2.2e-59 234.6 694 34.7
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 8.5e-59 232.6 729 32.4
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 8.5e-59 232.6 739 32.9
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 4.2e-58 230.3 675 33.9
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 5.5e-58 229.9 649 32.4
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 1.2e-57 228.8 595 36.5
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 3.6e-57 227.3 731 31.3
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 3.6e-57 227.3 696 32.3
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 4.7e-57 226.9 600 34.8
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 1.0e-56 225.7 720 32.2
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 4.4e-55 220.3 598 34.6
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 2.2e-54 218.0 710 32.0
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 2.8e-54 217.6 550 37.3
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 6.3e-54 216.5 621 33.0
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 1.8e-53 214.9 694 32.0
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 3.1e-53 214.2 697 33.0
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 3.1e-53 214.2 616 33.1
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 3.1e-53 214.2 700 31.1
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 3.1e-53 214.2 700 31.1
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 1.6e-52 211.8 478 38.5
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 4.5e-52 210.3 707 32.1
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 4.5e-52 210.3 508 39.2
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 1.3e-51 208.8 512 38.7
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 3.8e-51 207.2 665 31.7
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 6.6e-51 206.5 690 31.9
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 8.6e-51 206.1 594 34.0
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 3.3e-50 204.1 708 32.1
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 4.2e-50 203.8 707 32.1
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 5.5e-50 203.4 595 33.1
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 2.8e-49 201.1 506 37.7
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 3.6e-49 200.7 671 30.8
Haze_02594 Corylus avellana HOM05D005926 ORTHO05D007001 2.2e-46 191.4 436 35.1
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 2.4e-37 161.4 359 38.4
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 1.5e-34 152.1 541 33.3
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 4.3e-34 150.6 616 31.5
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 1.8e-32 145.2 535 33.3
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 2.9e-30 137.9 632 27.1
arahy.Tifrunner.gnm1.ann1.UA3HQT Arachis hypogaea HOM05D005926 ORTHO05D007001 4.6e-28 130.6 359 34.3
arahy.Tifrunner.gnm1.ann1.L8M84U Arachis hypogaea HOM05D005926 ORTHO05D007001 1.7e-27 128.6 359 34.3
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 1.8e-24 118.6 609 27.8
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 5.2e-24 117.1 306 35.6
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 4.4e-23 114.0 275 38.9
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 7.5e-23 113.2 633 26.4
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 6.0e-20 103.6 184 41.3
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 4.0e-16 90.9 151 39.7
Oeu026567.1 Olea europaea HOM05D005926 ORTHO05D007001 2.0e-15 88.6 431 25.8
AagrBONN_evm.TU.Sc2ySwM_228.4811 Anthoceros agrestis HOM05D005926 ORTHO05D007001 2.2e-14 85.1 318 31.4
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 2.2e-14 85.1 374 29.4


User provided reference genes

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