Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G109800 Theobroma cacao HOM05D007680 ORTHO05D009702 6.2e-77 290.8 157 100.0
Thecc.K0008600 Theobroma cacao HOM05D007680 ORTHO05D009702 6.2e-77 290.8 157 100.0
Duzib128G1419 Durio zibethinus HOM05D007680 ORTHO05D009702 9.3e-57 223.8 159 81.1
Gohir.D05G289400 Gossypium hirsutum HOM05D007680 ORTHO05D009702 6.7e-55 217.6 159 79.2
Gohir.A05G288200 Gossypium hirsutum HOM05D007680 ORTHO05D009702 1.9e-54 216.1 159 78.0
Gorai.009G304500 Gossypium raimondii HOM05D007680 ORTHO05D009702 1.6e-53 213.0 159 78.0
COL.COLO4_33896 Corchorus olitorius HOM05D007680 ORTHO05D009702 2.6e-43 179.1 159 69.2
Manes.05G202400 Manihot esculenta HOM05D007680 ORTHO05D009702 4.7e-24 115.2 156 50.6
FAN03G2755 Fragaria x ananassa HOM05D007680 ORTHO05D009702 1.8e-23 113.2 160 52.5
Haze_02610 Corylus avellana HOM05D007680 ORTHO05D009702 3.0e-23 112.5 168 50.0
PGR044G0006 Punica granatum HOM05D007680 ORTHO05D009702 3.0e-23 112.5 166 51.8
CiPaw.14G028600 Carya illinoinensis HOM05D007680 ORTHO05D009702 6.8e-23 111.3 150 50.7
QL04p041248 Quercus lobata HOM05D007680 ORTHO05D009702 1.2e-22 110.5 167 50.3
ClCG05G021580 Citrullus lanatus HOM05D007680 ORTHO05D009702 1.5e-22 110.2 125 61.6
Nn2g14013 Nelumbo nucifera HOM05D007680 ORTHO05D009702 4.4e-22 108.6 156 50.0
Phvul.007G245300 Phaseolus vulgaris HOM05D007680 ORTHO05D009702 9.8e-22 107.5 155 47.1
Atru.chr12.970 Acer truncatum HOM05D007680 ORTHO05D009702 2.2e-21 106.3 84 70.2
TAR636G0370 Trochodendron aralioides HOM05D007680 ORTHO05D009702 2.2e-21 106.3 150 52.0
CsaV3_5G035650 Cucumis sativus L. HOM05D007680 ORTHO05D009702 3.7e-21 105.5 116 62.9
Cpa.g.sc128.47 Carica papaya HOM05D007680 ORTHO05D009702 4.8e-21 105.1 165 50.3
Hma1.2p1_0026F.1_g016760 Hydrangea macrophylla HOM05D007680 ORTHO05D009702 4.8e-21 105.1 152 49.3
Cfa011226 Carpinus fangiana HOM05D007680 ORTHO05D009702 8.3e-21 104.4 168 47.6
Prupe.2G086600 Prunus persica HOM05D007680 ORTHO05D009702 1.1e-20 104.0 168 49.4
SalBow6G1777 Salvia bowleyana HOM05D007680 ORTHO05D009702 1.1e-20 104.0 159 47.8
Thhalv10026523m.g Eutrema salsugineum HOM05D007680 ORTHO05D009702 1.4e-20 103.6 149 50.3
Potri.008G025700 Populus trichocarpa HOM05D007680 ORTHO05D009702 2.4e-20 102.8 165 46.7
TWI38G2267 Tripterygium wilfordii HOM05D007680 ORTHO05D009702 3.1e-20 102.4 151 49.7
vmacro10277 Vaccinium macrocarpon HOM05D007680 ORTHO05D009702 3.1e-20 102.4 120 57.5
FAN06G0858 Fragaria x ananassa HOM05D007680 ORTHO05D009702 4.1e-20 102.1 162 48.8
GSVIVG01034708001 Vitis vinifera HOM05D007680 ORTHO05D009702 4.1e-20 102.1 163 47.2
MELO3C012366.2 Cucumis melo HOM05D007680 ORTHO05D009702 7.0e-20 101.3 96 67.7
Sed0005690 Sechium edule HOM05D007680 ORTHO05D009702 7.0e-20 101.3 157 51.6
THA.LOC104824894 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 1.6e-19 100.1 150 53.3
THA.LOC104824900 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 1.6e-19 100.1 150 53.3
CSS0013494 Camellia sinensis var. sinensis HOM05D007680 ORTHO05D009702 2.7e-19 99.4 84 73.8
Oeu060261.1 Olea europaea HOM05D007680 ORTHO05D009702 3.5e-19 99.0 160 49.4
Ciclev10032885m.g Citrus clementina HOM05D007680 ORTHO05D009702 4.5e-19 98.6 123 56.9
Lalb_Chr01g0010321 Lupinus albus HOM05D007680 ORTHO05D009702 4.5e-19 98.6 71 77.5
arahy.Tifrunner.gnm1.ann1.VK4BH4 Arachis hypogaea HOM05D007680 ORTHO05D009702 1.0e-18 97.4 71 76.1
MD07G1087200 Malus domestica HOM05D007680 ORTHO05D009702 1.7e-18 96.7 161 45.3
Lj2C27T21 Lonicera japonica HOM05D007680 ORTHO05D009702 2.3e-18 96.3 78 76.9
TAR636G3254 Trochodendron aralioides HOM05D007680 ORTHO05D009702 2.3e-18 96.3 121 54.5
Dinv30655 Davidia involucrata HOM05D007680 ORTHO05D009702 2.9e-18 95.9 143 46.9
Sp7g35810 Schrenkiella parvula HOM05D007680 ORTHO05D009702 2.9e-18 95.9 128 50.8
Migut.F01656 Erythranthe guttata HOM05D007680 ORTHO05D009702 3.8e-18 95.5 148 49.3
VMungo0720G1600 Vigna mungo HOM05D007680 ORTHO05D009702 3.8e-18 95.5 115 55.7
ATR0820G188 Amborella trichopoda HOM05D007680 ORTHO05D009702 5.0e-18 95.1 83 69.9
Glyma.02G165700 Glycine max HOM05D007680 ORTHO05D009702 6.5e-18 94.7 75 70.7
Aqoxy2G01382 Aquilegia oxysepala HOM05D007680 ORTHO05D009702 8.6e-18 94.4 159 44.0
PGSC0003DMG400027341 Solanum tuberosum HOM05D007680 ORTHO05D009702 8.6e-18 94.4 104 61.5
CDE08G1572 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 1.5e-17 93.6 150 45.3
MBI17_g11658_MAGBIO Magnolia biondii HOM05D007680 ORTHO05D009702 1.5e-17 93.6 83 71.1
EL10Ac2g03857 Beta vulgaris HOM05D007680 ORTHO05D009702 1.9e-17 93.2 109 52.3
HanXRQChr08g0217901 Helianthus annuus HOM05D007680 ORTHO05D009702 1.9e-17 93.2 166 46.4
TAR636G2061 Trochodendron aralioides HOM05D007680 ORTHO05D009702 1.9e-17 93.2 78 70.5
Medtr1g050700 Medicago truncatula HOM05D007680 ORTHO05D009702 3.3e-17 92.4 93 61.3
Psat6g094320 Pisum sativum HOM05D007680 ORTHO05D009702 3.3e-17 92.4 73 72.6
CDE02G0611 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 4.2e-17 92.0 118 50.0
RcHm_v2.0_Chr1g0333251 Rosa chinensis HOM05D007680 ORTHO05D009702 4.2e-17 92.0 148 46.6
Sopen11g003400 Solanum pennellii HOM05D007680 ORTHO05D009702 4.2e-17 92.0 142 50.7
A01p00970 Brassica napus HOM05D007680 ORTHO05D009702 5.5e-17 91.7 154 47.4
BraA01t00095Z Brassica rapa HOM05D007680 ORTHO05D009702 5.5e-17 91.7 154 47.4
CARHR246610 Cardamine hirsuta HOM05D007680 ORTHO05D009702 7.2e-17 91.3 135 48.9
AT4G40045 Arabidopsis thaliana HOM05D007680 ORTHO05D009702 1.2e-16 90.5 150 47.3
BolC1t00107H Brassica oleracea HOM05D007680 ORTHO05D009702 1.2e-16 90.5 70 75.7
Carub.0007s0203 Capsella rubella HOM05D007680 ORTHO05D009702 1.6e-16 90.1 118 50.0
TPR.G7612 Trifolium pratense HOM05D007680 ORTHO05D009702 1.6e-16 90.1 68 77.9
Actinidia31090 Actinidia chinensis HOM05D007680 ORTHO05D009702 2.1e-16 89.7 121 54.5
TPR.G305 Trifolium pratense HOM05D007680 ORTHO05D009702 4.7e-16 88.6 66 78.8
Ah.10g034230 Amaranthus hybridus HOM05D007680 ORTHO05D009702 6.1e-16 88.2 101 54.5
Potri.010G234900 Populus trichocarpa HOM05D007680 ORTHO05D009702 1.0e-15 87.4 163 44.2
Lalb_Chr19g0129271 Lupinus albus HOM05D007680 ORTHO05D009702 2.3e-15 86.3 67 74.6
Sc20g0001300 Simmondsia chinensis HOM05D007680 ORTHO05D009702 2.3e-15 86.3 59 78.0
PSO384G1244 Papaver somniferum HOM05D007680 ORTHO05D009702 3.0e-15 85.9 154 47.4
C01p01090 Brassica napus HOM05D007680 ORTHO05D009702 1.2e-14 84.0 152 42.8
AL7G12370 Arabidopsis lyrata HOM05D007680 ORTHO05D009702 2.6e-14 82.8 150 44.0
SEGI_03872 Sequoiadendron giganteum HOM05D007680 ORTHO05D009702 1.3e-13 80.5 100 52.0
unitig_899.g15034 Utricularia gibba HOM05D007680 ORTHO05D009702 2.8e-13 79.3 96 57.3
MD07G1069500 Malus domestica HOM05D007680 ORTHO05D009702 1.4e-12 77.0 120 44.2
Lj6g0009049 Lotus japonicus HOM05D007680 ORTHO05D009702 1.8e-12 76.6 127 44.9
Sabra10G0182100 Salix brachista HOM05D007680 ORTHO05D009702 2.0e-11 73.2 147 39.5
Glyma.10G104651 Glycine max HOM05D007680 ORTHO05D009702 4.5e-11 72.0 72 56.9
Hund17353 Selenicereus undatus HOM05D007680 ORTHO05D009702 7.8e-11 71.2 51 70.6
AUR62043943 Chenopodium quinoa HOM05D000002 ORTHO05D000001 5.0e-10 68.6 123 36.6
arahy.Tifrunner.gnm1.ann1.UIS3VC Arachis hypogaea HOM05D007680 ORTHO05D009702 6.6e-10 68.2 94 50.0
Zm00001eb411120 Zea mays HOM05D007680 ORTHO05D009702 2.5e-09 66.2 73 56.2
Lsat_1_v5_gn_2_102521 Lactuca sativa HOM05D007680 ORTHO05D009702 1.6e-08 63.5 107 43.0
Zm00001eb004510 Zea mays HOM05D007680 ORTHO05D009702 2.8e-08 62.8 105 45.7
Os12g0206700 Oryza sativa ssp. japonica HOM05D007680 ORTHO05D009702 3.4e-06 55.8 93 44.1
MBI17_g15050_MAGBIO Magnolia biondii HOM05D007680 ORTHO05D009702 9.8e-06 54.3 105 39.0


User provided reference genes

Program Settings