Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G108700 Theobroma cacao HOM05D000125 ORTHO05D009513 1.0e-122 443.4 215 100.0
Thecc.05G269500 Theobroma cacao HOM05D000125 ORTHO05D009513 2.7e-30 136.3 146 48.6
Duzib128G1705 Durio zibethinus HOM05D000125 ORTHO05D009513 4.6e-30 135.6 143 51.7
Thecc.05G269700 Theobroma cacao HOM05D000125 ORTHO05D009513 1.2e-27 127.5 153 45.8
Thecc.05G269200 Theobroma cacao HOM05D000125 ORTHO05D009513 5.1e-21 105.5 148 42.6
Duzib128G1812 Durio zibethinus HOM05D000125 ORTHO05D009513 4.3e-20 102.4 81 60.5
Gorai.007G310300 Gossypium raimondii HOM05D000768 ORTHO05D009513 2.4e-18 96.7 146 40.4
Gohir.D11G286900 Gossypium hirsutum HOM05D000768 ORTHO05D009513 3.1e-18 96.3 146 40.4
COL.COLO4_15509 Corchorus olitorius HOM05D000125 ORTHO05D009513 2.0e-17 93.6 172 35.5
Thecc.06G009300 Theobroma cacao HOM05D000125 ORTHO05D009513 4.5e-17 92.4 136 39.7
Gohir.D12G147850 Gossypium hirsutum HOM05D000125 ORTHO05D009513 9.9e-17 91.3 150 38.0
Thecc.05G268400 Theobroma cacao HOM05D000125 ORTHO05D009513 2.9e-16 89.7 106 48.1
CARHR123790 Cardamine hirsuta HOM05D000125 ORTHO05D009513 1.1e-15 87.8 151 36.4
Gohir.A01G043400 Gossypium hirsutum HOM05D000125 ORTHO05D009513 1.4e-15 87.4 151 40.4
Gohir.A11G276566 Gossypium hirsutum HOM05D000768 ORTHO05D009513 1.4e-15 87.4 150 38.7
Gorai.002G041400 Gossypium raimondii HOM05D000125 ORTHO05D009513 2.4e-15 86.7 151 40.4
Thecc.06G010700 Theobroma cacao HOM05D000125 ORTHO05D009513 3.2e-15 86.3 136 38.2
BolC2t08462H Brassica oleracea HOM05D000125 ORTHO05D009513 5.4e-15 85.5 154 37.0
Gohir.A12G143100 Gossypium hirsutum HOM05D000125 ORTHO05D009513 5.4e-15 85.5 172 36.6
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 5.4e-15 85.5 126 40.5
A02p14340 Brassica napus HOM05D000125 ORTHO05D009513 7.1e-15 85.1 154 37.7
BraA02t06495Z Brassica rapa HOM05D000125 ORTHO05D009513 7.1e-15 85.1 154 37.7
Gorai.008G159100 Gossypium raimondii HOM05D000125 ORTHO05D009513 7.1e-15 85.1 148 36.5
Gohir.D01G033900 Gossypium hirsutum HOM05D000125 ORTHO05D009513 9.3e-15 84.7 152 37.5
Thecc.10G171400 Theobroma cacao HOM05D000125 ORTHO05D009513 9.3e-15 84.7 141 39.0
BcaB05g24296 Brassica carinata HOM05D000125 ORTHO05D009513 1.2e-14 84.3 148 35.1
Gohir.A11G276500 Gossypium hirsutum HOM05D000768 ORTHO05D009513 1.2e-14 84.3 156 34.6
Duzib106G0688 Durio zibethinus HOM05D000125 ORTHO05D009513 1.6e-14 84.0 92 45.7
CARHR123760 Cardamine hirsuta HOM05D000125 ORTHO05D009513 2.7e-14 83.2 149 36.9
Thecc.06G009100 Theobroma cacao HOM05D000125 ORTHO05D009513 2.7e-14 83.2 135 37.8
CARHR113470 Cardamine hirsuta HOM05D000125 ORTHO05D009513 6.0e-14 82.0 156 33.3
Thhalv10016296m.g Eutrema salsugineum HOM05D000125 ORTHO05D009513 6.0e-14 82.0 153 35.3
Thhalv10016584m.g Eutrema salsugineum HOM05D000125 ORTHO05D009513 6.0e-14 82.0 153 35.3
Duzib177G0793 Durio zibethinus HOM05D000125 ORTHO05D009513 7.9e-14 81.6 144 36.1
Thecc.06G009700 Theobroma cacao HOM05D000125 ORTHO05D009513 7.9e-14 81.6 119 40.3
Thecc.06G009900 Theobroma cacao HOM05D000125 ORTHO05D000146 1.0e-13 81.3 119 40.3
CARHR123840 Cardamine hirsuta HOM05D000125 ORTHO05D009513 1.3e-13 80.9 153 35.3
Thecc.06G010300 Theobroma cacao HOM05D000125 ORTHO05D009513 1.8e-13 80.5 159 33.3
CARHR113280 Cardamine hirsuta HOM05D000125 ORTHO05D009513 5.1e-13 79.0 155 34.8
Duzib177G1009 Durio zibethinus HOM05D000125 ORTHO05D009513 5.1e-13 79.0 144 36.8
AL4G11120 Arabidopsis lyrata HOM05D000125 ORTHO05D009513 1.9e-12 77.0 154 35.1
Duzib177G0534 Durio zibethinus HOM05D000125 ORTHO05D009513 4.3e-12 75.9 148 33.1
Thecc.06G010500 Theobroma cacao HOM05D000125 ORTHO05D000146 7.4e-12 75.1 138 32.6
AL4G11160 Arabidopsis lyrata HOM05D000125 ORTHO05D009513 2.8e-11 73.2 146 33.6
Gohir.D11G256101 Gossypium hirsutum HOM05D000125 ORTHO05D009513 4.8e-11 72.4 102 40.2
CARHR123830 Cardamine hirsuta HOM05D000125 ORTHO05D009513 1.1e-10 71.2 153 33.3
Thhalv10017722m.g Eutrema salsugineum HOM05D000125 ORTHO05D009513 1.4e-10 70.9 152 31.6
AT2G21840 Arabidopsis thaliana HOM05D000125 ORTHO05D009513 2.4e-10 70.1 149 36.2
Carub.0002s0455 Capsella rubella HOM05D000043 ORTHO05D009513 5.3e-10 68.9 156 33.3
Ciclev10003469m.g Citrus clementina HOM05D000125 ORTHO05D009513 9.0e-10 68.2 123 32.5
AT2G21830 Arabidopsis thaliana HOM05D000125 ORTHO05D009513 1.2e-09 67.8 148 33.1
PGR004G1526 Punica granatum HOM05D000125 ORTHO05D000120 1.5e-09 67.4 146 29.5
THA.LOC104814999 Tarenaya hassleriana HOM05D000125 ORTHO05D009513 1.5e-09 67.4 151 34.4
Thecc.05G268500 Theobroma cacao HOM05D000125 ORTHO05D009513 1.5e-09 67.4 149 32.2
Haze_00427 Corylus avellana HOM05D000125 ORTHO05D010101 2.0e-09 67.0 134 32.8
Duzib128G0801 Durio zibethinus HOM05D000125 ORTHO05D000120 1.7e-08 63.9 147 32.7
AL4G11150 Arabidopsis lyrata HOM05D000125 ORTHO05D009513 2.2e-08 63.5 155 32.9
Duzib128G0744 Durio zibethinus HOM05D000125 ORTHO05D000120 2.2e-08 63.5 126 32.5
QL09p024181 Quercus lobata HOM05D000125 ORTHO05D000120 2.2e-08 63.5 158 27.8
QL93p0209_0012 Quercus lobata HOM05D000125 ORTHO05D000120 2.2e-08 63.5 158 27.8
Atru.chr2.1023 Acer truncatum HOM05D000125 ORTHO05D009513 2.9e-08 63.2 152 31.6
Gohir.A11G276766 Gossypium hirsutum HOM05D000768 ORTHO05D009513 1.1e-07 61.2 150 31.3
PGR004G0613 Punica granatum HOM05D000125 ORTHO05D000120 1.4e-07 60.8 145 29.7
Gohir.A11G245800 Gossypium hirsutum HOM05D000125 ORTHO05D009513 1.9e-07 60.5 68 39.7
Thecc.05G269400 Theobroma cacao HOM05D000125 ORTHO05D009513 1.9e-07 60.5 75 41.3
QL04p029772 Quercus lobata HOM05D000125 ORTHO05D000120 2.4e-07 60.1 145 32.4
Thecc.05G269000 Theobroma cacao HOM05D000125 ORTHO05D009513 2.4e-07 60.1 84 44.0
Ciclev10003397m.g Citrus clementina HOM05D000125 ORTHO05D000807 3.2e-07 59.7 104 40.4
Ciclev10003554m.g Citrus clementina HOM05D000125 ORTHO05D009513 4.2e-07 59.3 84 39.3
COL.COLO4_15504 Corchorus olitorius HOM05D000125 ORTHO05D000120 4.2e-07 59.3 50 60.0
CSS0005384 Camellia sinensis var. sinensis HOM05D000125 ORTHO05D011744 1.6e-06 57.4 103 32.0
CSS0030550 Camellia sinensis var. sinensis HOM05D000125 ORTHO05D011744 1.6e-06 57.4 103 32.0
Carub.0004s0087 Capsella rubella HOM05D000125 ORTHO05D009513 2.1e-06 57.0 152 32.2
COL.COLO4_15508 Corchorus olitorius HOM05D000125 ORTHO05D000120 3.5e-06 56.2 76 38.2
QL02p073603 Quercus lobata HOM05D000125 ORTHO05D010101 3.5e-06 56.2 137 24.8
QL04p029687 Quercus lobata HOM05D000125 ORTHO05D000120 3.5e-06 56.2 104 36.5
Thecc.10G171000 Theobroma cacao HOM05D000125 ORTHO05D009513 3.5e-06 56.2 176 27.3
PGR004G1272 Punica granatum HOM05D000125 ORTHO05D000120 6.0e-06 55.5 114 29.8


User provided reference genes

Program Settings