Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G097500 Theobroma cacao HOM05D007333 ORTHO05D008874 1.6e-73 279.3 137 100.0
Duzib114G0443 Durio zibethinus HOM05D007333 ORTHO05D008874 1.5e-55 219.5 139 77.7
Duzib128G0626 Durio zibethinus HOM05D007333 ORTHO05D008874 6.0e-52 207.6 134 73.9
Gohir.D05G290801 Gossypium hirsutum HOM05D007333 ORTHO05D008874 1.8e-51 206.1 138 71.0
Gorai.009G305900 Gossypium raimondii HOM05D007333 ORTHO05D008874 5.1e-51 204.5 138 71.0
Gohir.A05G289401 Gossypium hirsutum HOM05D007333 ORTHO05D008874 2.5e-50 202.2 138 71.0
COL.COLO4_34172 Corchorus olitorius HOM05D007333 ORTHO05D008874 4.8e-49 198.0 139 68.3
Manes.07G092300 Manihot esculenta HOM05D007333 ORTHO05D008874 1.4e-29 133.3 149 50.3
Potri.010G233400 Populus trichocarpa HOM05D007333 ORTHO05D008874 3.3e-26 122.1 146 44.5
Manes.10G054600 Manihot esculenta HOM05D007333 ORTHO05D008874 2.2e-25 119.4 150 46.7
RcHm_v2.0_Chr1g0334731 Rosa chinensis HOM05D007333 ORTHO05D008874 6.3e-25 117.9 131 47.3
Ciclev10032982m.g Citrus clementina HOM05D007333 ORTHO05D008874 7.0e-24 114.4 149 44.3
TWI38G1382 Tripterygium wilfordii HOM05D007333 ORTHO05D008874 1.2e-23 113.6 120 54.2
Cpa.g.sc128.62 Carica papaya HOM05D007333 ORTHO05D008874 3.5e-23 112.1 138 44.9
FAN01G0324 Fragaria x ananassa HOM05D007333 ORTHO05D008874 4.5e-23 111.7 130 43.8
TWI63G0473 Tripterygium wilfordii HOM05D007333 ORTHO05D008874 4.5e-23 111.7 130 49.2
FAN03G1611 Fragaria x ananassa HOM05D007333 ORTHO05D008874 2.2e-22 109.4 130 43.1
FAN06G2923 Fragaria x ananassa HOM05D007333 ORTHO05D008874 2.2e-22 109.4 130 43.1
FAN10G2394 Fragaria x ananassa HOM05D007333 ORTHO05D008874 2.2e-22 109.4 130 43.1
CiPaw.14G027900 Carya illinoinensis HOM05D007333 ORTHO05D008874 5.0e-22 108.2 140 42.1
PGR044G2090 Punica granatum HOM05D007333 ORTHO05D008874 8.5e-22 107.5 138 45.7
Prupe.2G091100 Prunus persica HOM05D007333 ORTHO05D008874 1.1e-21 107.1 136 44.9
Atru.chr12.950 Acer truncatum HOM05D007333 ORTHO05D008874 2.5e-21 105.9 146 41.8
Sabra10G0181000 Salix brachista HOM05D007333 ORTHO05D008874 4.7e-20 101.7 165 38.2
CANSAT56G1926 Cannabis sativa HOM05D007333 ORTHO05D008874 1.5e-18 96.7 136 42.6
THA.LOC104823559 Tarenaya hassleriana HOM05D007333 ORTHO05D008874 1.5e-18 96.7 134 42.5
Aa31LG10G7320 Aethionema arabicum HOM05D007333 ORTHO05D008874 3.1e-16 89.0 141 39.0
Dinv20855 Davidia involucrata HOM05D007333 ORTHO05D008874 5.3e-16 88.2 133 37.6
Carub.0005s1859 Capsella rubella HOM05D007333 ORTHO05D008874 2.7e-15 85.9 129 38.8
arahy.Tifrunner.gnm1.ann1.YB4FNL Arachis hypogaea HOM05D007333 ORTHO05D008874 4.5e-15 85.1 127 38.6
Eucgr.J01027 Eucalyptus grandis HOM05D007333 ORTHO05D008874 5.9e-15 84.7 80 51.2
Aqoxy2G01500 Aquilegia oxysepala HOM05D007333 ORTHO05D008874 7.7e-15 84.3 135 36.3
vmacro10268 Vaccinium macrocarpon HOM05D007333 ORTHO05D008874 1.0e-14 84.0 147 42.9
arahy.Tifrunner.gnm1.ann1.N9I1MN Arachis hypogaea HOM05D007333 ORTHO05D008874 1.7e-14 83.2 127 37.8
C08p27470 Brassica napus HOM05D007333 ORTHO05D008874 2.9e-14 82.4 118 40.7
Actinidia34782 Actinidia chinensis HOM05D007333 ORTHO05D008874 3.8e-14 82.0 138 40.6
AL5G32820 Arabidopsis lyrata HOM05D007333 ORTHO05D008874 3.8e-14 82.0 96 45.8
BcaC07g39593 Brassica carinata HOM05D007333 ORTHO05D008874 3.8e-14 82.0 118 40.7
Dinv31280 Davidia involucrata HOM05D007333 ORTHO05D008874 3.8e-14 82.0 62 61.3
BolC8t50364H Brassica oleracea HOM05D007333 ORTHO05D008874 5.0e-14 81.6 118 40.7
Sp5g10030 Schrenkiella parvula HOM05D007333 ORTHO05D008874 5.0e-14 81.6 90 47.8
AT3G52230 Arabidopsis thaliana HOM05D007333 ORTHO05D008874 1.5e-13 80.1 107 40.2
Actinidia38900 Actinidia chinensis HOM05D007333 ORTHO05D008874 1.9e-13 79.7 138 40.6
Hma1.2p1_0567F.1_g180010 Hydrangea macrophylla HOM05D007333 ORTHO05D008874 1.9e-13 79.7 93 46.2
Lj5g0012880 Lotus japonicus HOM05D007333 ORTHO05D008874 3.2e-13 79.0 125 36.0
MSTRG.408 Avicennia marina HOM05D007333 ORTHO05D008874 4.2e-13 78.6 140 40.7
DCAR_019045 Daucus carota HOM05D007333 ORTHO05D008874 7.2e-13 77.8 128 39.8
Sed0000251 Sechium edule HOM05D007333 ORTHO05D008874 9.4e-13 77.4 104 39.4
CARHR162000 Cardamine hirsuta HOM05D007333 ORTHO05D008874 2.1e-12 76.3 89 47.2
BraA09t39992Z Brassica rapa HOM05D007333 ORTHO05D008874 2.7e-12 75.9 103 40.8
Migut.F01662 Erythranthe guttata HOM05D007333 ORTHO05D008874 2.7e-12 75.9 104 41.3
MELO3C019874.2 Cucumis melo HOM05D007333 ORTHO05D008874 3.6e-12 75.5 109 38.5
CsaV3_2G032900 Cucumis sativus L. HOM05D007333 ORTHO05D008874 4.7e-12 75.1 115 37.4
Lalb_Chr21g0313181 Lupinus albus HOM05D007333 ORTHO05D008874 6.1e-12 74.7 141 39.0
GSVIVG01034686001 Vitis vinifera HOM05D007333 ORTHO05D008874 6.1e-12 74.7 126 39.7
Phvul.007G105600 Phaseolus vulgaris HOM05D007333 ORTHO05D008874 1.0e-11 73.9 128 35.2
ClCG08G008020 Citrullus lanatus HOM05D007333 ORTHO05D008874 1.4e-11 73.6 145 36.6
A09p45290 Brassica napus HOM05D007333 ORTHO05D008874 1.8e-11 73.2 103 39.8
Glyma.10G201500 Glycine max HOM05D007333 ORTHO05D008874 1.8e-11 73.2 120 34.2
Peaxi162Scf00398g00057 Petunia axillaris HOM05D007333 ORTHO05D008874 5.2e-11 71.6 87 47.1
Cc02_g10320 Coffea canephora HOM05D007333 ORTHO05D008874 6.8e-11 71.2 59 50.8
Nitab4.5_0000593g0040 Nicotiana tabacum HOM05D007333 ORTHO05D008874 6.8e-11 71.2 122 41.0
TAR633G0429 Trochodendron aralioides HOM05D007333 ORTHO05D008874 1.2e-10 70.5 135 34.8
Ca_10485_v3 Cicer arietinum L. HOM05D007333 ORTHO05D008874 1.5e-10 70.1 133 35.3
A04p07130 Brassica napus HOM05D007333 ORTHO05D008874 2.6e-10 69.3 55 60.0
HanXRQChr08g0218141 Helianthus annuus HOM05D007333 ORTHO05D008874 2.6e-10 69.3 116 37.9
Nitab4.5_0003408g0030 Nicotiana tabacum HOM05D007333 ORTHO05D008874 2.6e-10 69.3 92 44.6
Oeu015044.1 Olea europaea HOM05D007333 ORTHO05D008874 2.6e-10 69.3 83 50.6
Solyc11g007680.2 Solanum lycopersicum HOM05D007333 ORTHO05D008874 2.6e-10 69.3 89 47.2
Sopen11g003540 Solanum pennellii HOM05D007333 ORTHO05D008874 2.6e-10 69.3 89 47.2
PGSC0003DMG402027350 Solanum tuberosum HOM05D007333 ORTHO05D008874 3.4e-10 68.9 89 47.2
Lalb_Chr06g0170141 Lupinus albus HOM05D007333 ORTHO05D008874 4.4e-10 68.6 148 34.5
VMungo0720G1448 Vigna mungo HOM05D007333 ORTHO05D008874 5.7e-10 68.2 122 34.4
Glyma.20G188900 Glycine max HOM05D007333 ORTHO05D008874 7.5e-10 67.8 118 32.2
Ah.06g184540 Amaranthus hybridus HOM05D007333 ORTHO05D008874 9.8e-10 67.4 93 45.2
Lsat_1_v5_gn_2_102881 Lactuca sativa HOM05D007333 ORTHO05D008874 9.8e-10 67.4 148 35.8
Medtr1g492600 Medicago truncatula HOM05D007333 ORTHO05D008874 9.8e-10 67.4 60 50.0
Oeu030485.1 Olea europaea HOM05D007333 ORTHO05D008874 9.8e-10 67.4 69 53.6
Lsat_1_v5_gn_8_23060 Lactuca sativa HOM05D007333 ORTHO05D008874 1.3e-09 67.0 121 37.2
HanXRQChr14g0456271 Helianthus annuus HOM05D007333 ORTHO05D008874 1.7e-09 66.6 90 43.3
Sc20g0001370 Simmondsia chinensis HOM05D007333 ORTHO05D008874 1.7e-09 66.6 134 32.1
SalBow6G6510 Salvia bowleyana HOM05D007333 ORTHO05D008874 2.2e-09 66.2 129 35.7
TPR.G2540 Trifolium pratense HOM05D007333 ORTHO05D008874 2.2e-09 66.2 88 44.3
ECA233G0976 Erigeron canadensis HOM05D007333 ORTHO05D008874 4.8e-09 65.1 81 46.9
Medtr1g492630 Medicago truncatula HOM05D007333 ORTHO05D008874 4.8e-09 65.1 123 36.6
Thhalv10010807m.g Eutrema salsugineum HOM05D007333 ORTHO05D008874 8.3e-09 64.3 82 40.2
SGA_v2.0_scaffold62G21322 Striga asiatica HOM05D007333 ORTHO05D008874 1.4e-08 63.5 145 34.5
Cfa011213 Carpinus fangiana HOM05D018442 ORTHO05D020347 3.1e-08 62.4 102 37.3
SEGI_06473 Sequoiadendron giganteum HOM05D007333 ORTHO05D008874 3.1e-08 62.4 54 48.1
Haze_02631 Corylus avellana HOM05D007333 ORTHO05D008874 7.0e-08 61.2 102 36.3
QL04p040607 Quercus lobata HOM05D007333 ORTHO05D008874 7.0e-08 61.2 106 35.8
CSS0002382 Camellia sinensis var. sinensis HOM05D007333 ORTHO05D008874 1.2e-07 60.5 127 33.9
Nn2g13958 Nelumbo nucifera HOM05D007333 ORTHO05D008874 1.2e-07 60.5 47 59.6
unitig_746.g26629 Utricularia gibba HOM05D007333 ORTHO05D008874 2.0e-07 59.7 116 32.8
ECA238G3189 Erigeron canadensis HOM05D007333 ORTHO05D008874 4.5e-07 58.5 132 34.8
Nn6g35090 Nelumbo nucifera HOM05D007333 ORTHO05D008874 7.7e-07 57.8 116 31.0
MBI17_g20230_MAGBIO Magnolia biondii HOM05D007333 ORTHO05D008874 1.7e-06 56.6 79 43.0
FvH4_7g06450 Fragaria vesca HOM05D007333 ORTHO05D008874 2.9e-06 55.8 91 31.9
Psat6g175280 Pisum sativum HOM05D007333 ORTHO05D008874 6.6e-06 54.7 66 39.4
Sed0004459 Sechium edule HOM05D027254 ORTHO05D028888 8.6e-06 54.3 88 34.1


User provided reference genes

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