Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G090900 Theobroma cacao HOM05D000071 ORTHO05D000029 9.9e-19 96.3 69 100.0
Thecc.10G091700 Theobroma cacao HOM05D000071 ORTHO05D000029 9.6e-14 79.7 41 97.6
Gohir.D11G074100 Gossypium hirsutum HOM05D000071 ORTHO05D000029 7.6e-11 70.1 65 83.1
Gorai.007G079500 Gossypium raimondii HOM05D000071 ORTHO05D000029 7.6e-11 70.1 65 83.1
Duzib174G0003 Durio zibethinus HOM05D000071 ORTHO05D000029 4.9e-10 67.4 38 86.8
Gohir.A11G070200 Gossypium hirsutum HOM05D000071 ORTHO05D000029 1.9e-09 65.5 37 86.5
Duzib114G0642 Durio zibethinus HOM05D000071 ORTHO05D000029 5.4e-09 63.9 42 76.2
Gohir.A05G394800 Gossypium hirsutum HOM05D000071 ORTHO05D000029 9.3e-09 63.2 42 73.8
QL08p020060 Quercus lobata HOM05D000071 ORTHO05D000029 1.6e-08 62.4 42 69.0
QL10p000700 Quercus lobata HOM05D001362 ORTHO05D001310 2.7e-08 61.6 42 71.4
COL.COLO4_15438 Corchorus olitorius HOM05D000071 ORTHO05D000029 3.5e-08 61.2 40 75.0
Duzib128G0917 Durio zibethinus HOM05D000071 ORTHO05D000029 3.5e-08 61.2 33 87.9
Duzib151G0399 Durio zibethinus HOM05D000071 ORTHO05D000029 3.5e-08 61.2 41 70.7
Duzib151G0711 Durio zibethinus HOM05D000071 ORTHO05D000029 3.5e-08 61.2 41 70.7
Gorai.012G024000 Gossypium raimondii HOM05D000071 ORTHO05D000029 3.5e-08 61.2 42 69.0
COL.COLO4_37333 Corchorus olitorius HOM05D000071 ORTHO05D000029 4.6e-08 60.8 41 65.9
QL09p048571 Quercus lobata HOM05D000071 ORTHO05D000029 4.6e-08 60.8 42 71.4
Gohir.D04G020250 Gossypium hirsutum HOM05D000071 ORTHO05D000029 1.3e-07 59.3 42 66.7
QL09p013806 Quercus lobata HOM05D000071 ORTHO05D000029 1.3e-07 59.3 42 69.0
Duzib177G0287 Durio zibethinus HOM05D000071 ORTHO05D000029 1.8e-07 58.9 41 73.2
Duzib177G0440 Durio zibethinus HOM05D000071 ORTHO05D000029 1.8e-07 58.9 41 73.2
Duzib177G0924 Durio zibethinus HOM05D000071 ORTHO05D000029 1.8e-07 58.9 41 73.2
CSS0041175 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 2.3e-07 58.5 38 73.7
Duzib068G0770 Durio zibethinus HOM05D000071 ORTHO05D000029 2.3e-07 58.5 41 65.9
Gohir.A08G217200 Gossypium hirsutum HOM05D000071 ORTHO05D000029 2.3e-07 58.5 40 72.5
Gohir.D08G234200 Gossypium hirsutum HOM05D000071 ORTHO05D000029 2.3e-07 58.5 40 72.5
Gorai.004G248900 Gossypium raimondii HOM05D000071 ORTHO05D000029 2.3e-07 58.5 40 72.5
QL08p001330 Quercus lobata HOM05D000071 ORTHO05D000029 3.0e-07 58.2 39 69.2
Thecc.03G148000 Theobroma cacao HOM05D000071 ORTHO05D000029 3.0e-07 58.2 41 65.9
Manes.06G076200 Manihot esculenta HOM05D000071 ORTHO05D000029 6.7e-07 57.0 39 74.4
Thecc.04G264800 Theobroma cacao HOM05D000071 ORTHO05D000029 6.7e-07 57.0 39 66.7
TAR627G0622 Trochodendron aralioides HOM05D000071 ORTHO05D000029 6.7e-07 57.0 41 65.9
CAN.G248.26 Capsicum annuum HOM05D000071 ORTHO05D000029 8.7e-07 56.6 41 68.3
Gohir.A10G136751 Gossypium hirsutum HOM05D000071 ORTHO05D000029 8.7e-07 56.6 41 65.9
Duzib177G0555 Durio zibethinus HOM05D000071 ORTHO05D000029 1.1e-06 56.2 41 68.3
Duzib177G0768 Durio zibethinus HOM05D000071 ORTHO05D000029 1.1e-06 56.2 41 68.3
Gohir.A10G136650 Gossypium hirsutum HOM05D000071 ORTHO05D000029 1.1e-06 56.2 42 64.3
QL09p014039 Quercus lobata HOM05D000071 ORTHO05D000029 1.1e-06 56.2 41 63.4
TAR629G2493 Trochodendron aralioides HOM05D000071 ORTHO05D000029 1.1e-06 56.2 39 69.2
vmacro06850 Vaccinium macrocarpon HOM05D000071 ORTHO05D000029 1.1e-06 56.2 38 68.4
Prupe.2G166100 Prunus persica HOM05D000071 ORTHO05D000029 1.5e-06 55.8 41 65.9
Aqoxy7G01695 Aquilegia oxysepala HOM05D000071 ORTHO05D000029 1.9e-06 55.5 68 63.2
Ciclev10029837m.g Citrus clementina HOM05D000071 ORTHO05D000029 1.9e-06 55.5 41 61.0
Prupe.7G040200 Prunus persica HOM05D000071 ORTHO05D000029 1.9e-06 55.5 42 64.3
QL08p005662 Quercus lobata HOM05D000071 ORTHO05D000029 1.9e-06 55.5 35 74.3
VMungo0464G1728 Vigna mungo HOM05D000071 ORTHO05D000029 1.9e-06 55.5 38 68.4
Ciclev10027808m.g Citrus clementina HOM05D000071 ORTHO05D000029 2.5e-06 55.1 42 61.9
Gohir.D10G130065 Gossypium hirsutum HOM05D000071 ORTHO05D000029 3.3e-06 54.7 41 63.4
Gorai.011G143600 Gossypium raimondii HOM05D000071 ORTHO05D000029 3.3e-06 54.7 41 63.4
MBI17_g33272_MAGBIO Magnolia biondii HOM05D000071 ORTHO05D000029 3.3e-06 54.7 42 59.5
Nn3g18615 Nelumbo nucifera HOM05D000071 ORTHO05D000029 3.3e-06 54.7 40 62.5
Rhsim03G0157300 Rhododendron simsii HOM05D000071 ORTHO05D000029 3.3e-06 54.7 40 70.0
Thecc.04G265000 Theobroma cacao HOM05D000071 ORTHO05D000029 3.3e-06 54.7 42 61.9
Thecc.10G091500 Theobroma cacao HOM05D000071 ORTHO05D000029 3.3e-06 54.7 38 68.4
COL.COLO4_30958 Corchorus olitorius HOM05D000071 ORTHO05D000029 4.3e-06 54.3 41 61.0
FAN01G0842 Fragaria x ananassa HOM05D000071 ORTHO05D000029 4.3e-06 54.3 41 63.4
FAN10G4146 Fragaria x ananassa HOM05D000071 ORTHO05D000029 4.3e-06 54.3 41 63.4
FAN18G3039 Fragaria x ananassa HOM05D000071 ORTHO05D000029 4.3e-06 54.3 38 65.8
Gohir.A11G293341 Gossypium hirsutum HOM05D000071 ORTHO05D000029 4.3e-06 54.3 42 64.3
Gohir.A11G293482 Gossypium hirsutum HOM05D000071 ORTHO05D000029 4.3e-06 54.3 42 64.3
Gorai.011G143500 Gossypium raimondii HOM05D000071 ORTHO05D000029 4.3e-06 54.3 41 65.9
TAR636G2949 Trochodendron aralioides HOM05D000071 ORTHO05D000029 4.3e-06 54.3 40 67.5
CSS0038152 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 5.6e-06 53.9 38 68.4
CSS0041720 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 5.6e-06 53.9 38 65.8
CAN.G248.28 Capsicum annuum HOM05D000071 ORTHO05D000029 5.6e-06 53.9 41 65.9
CAN.G248.29 Capsicum annuum HOM05D000071 ORTHO05D000029 5.6e-06 53.9 41 63.4
Ciclev10010752m.g Citrus clementina HOM05D000071 ORTHO05D000029 5.6e-06 53.9 40 62.5
Duzib106G0672 Durio zibethinus HOM05D000071 ORTHO05D000029 5.6e-06 53.9 42 66.7
Duzib153G0004 Durio zibethinus HOM05D000071 ORTHO05D000029 5.6e-06 53.9 42 66.7
Duzib234G0002 Durio zibethinus HOM05D000071 ORTHO05D000029 5.6e-06 53.9 42 66.7
Gorai.011G143400 Gossypium raimondii HOM05D000071 ORTHO05D000029 5.6e-06 53.9 41 65.9
GSVIVG01016012001 Vitis vinifera HOM05D000071 ORTHO05D000029 5.6e-06 53.9 38 63.2
GSVIVG01024424001 Vitis vinifera HOM05D000071 ORTHO05D000029 5.6e-06 53.9 41 65.9
Ciclev10010475m.g Citrus clementina HOM05D000071 ORTHO05D000029 7.4e-06 53.5 40 62.5
Ciclev10027376m.g Citrus clementina HOM05D000071 ORTHO05D000029 7.4e-06 53.5 40 62.5
Haze_00084 Corylus avellana HOM05D000071 ORTHO05D000029 7.4e-06 53.5 41 63.4
Gohir.D10G129999 Gossypium hirsutum HOM05D000071 ORTHO05D000029 7.4e-06 53.5 41 63.4
Gohir.D11G299706 Gossypium hirsutum HOM05D000071 ORTHO05D000029 7.4e-06 53.5 41 63.4
Gohir.D11G307632 Gossypium hirsutum HOM05D000071 ORTHO05D000029 7.4e-06 53.5 41 63.4
Gorai.007G338100 Gossypium raimondii HOM05D000071 ORTHO05D000029 7.4e-06 53.5 41 63.4
HanXRQChr01g0022861 Helianthus annuus HOM05D000071 ORTHO05D000029 7.4e-06 53.5 38 63.2
MD01G1057000 Malus domestica HOM05D000071 ORTHO05D000029 7.4e-06 53.5 41 63.4
MD14G1186300 Malus domestica HOM05D000071 ORTHO05D000029 7.4e-06 53.5 41 61.0
Prupe.2G171500 Prunus persica HOM05D000071 ORTHO05D000029 7.4e-06 53.5 41 63.4
QL08p005572 Quercus lobata HOM05D000071 ORTHO05D000029 7.4e-06 53.5 32 75.0
Rhsim03G0157900 Rhododendron simsii HOM05D000071 ORTHO05D000029 7.4e-06 53.5 38 65.8
PGSC0003DMG400018308 Solanum tuberosum HOM05D000071 ORTHO05D000029 7.4e-06 53.5 41 61.0
vmacro06851 Vaccinium macrocarpon HOM05D000071 ORTHO05D000029 7.4e-06 53.5 38 68.4
Ciclev10007334m.g Citrus clementina HOM05D000071 ORTHO05D000029 9.6e-06 53.1 64 65.6
Migut.N02353 Erythranthe guttata HOM05D000071 ORTHO05D000029 9.6e-06 53.1 40 65.0
Gohir.A11G293841 Gossypium hirsutum HOM05D000071 ORTHO05D000029 9.6e-06 53.1 42 64.3
HanXRQChr01g0022481 Helianthus annuus HOM05D000071 ORTHO05D000029 9.6e-06 53.1 38 63.2
HanXRQChr01g0022871 Helianthus annuus HOM05D000071 ORTHO05D000029 9.6e-06 53.1 38 63.2
PSO210G4457 Papaver somniferum HOM05D000071 ORTHO05D000029 9.6e-06 53.1 38 65.8
PSO782G5145 Papaver somniferum HOM05D000071 ORTHO05D000029 9.6e-06 53.1 40 62.5
Prupe.4G122000 Prunus persica HOM05D000071 ORTHO05D000029 9.6e-06 53.1 41 63.4
Thecc.04G264500 Theobroma cacao HOM05D000071 ORTHO05D000029 9.6e-06 53.1 38 63.2
vmacro06853 Vaccinium macrocarpon HOM05D000071 ORTHO05D000029 9.6e-06 53.1 40 65.0


User provided reference genes

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