Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G088100 Theobroma cacao HOM05D004197 ORTHO05D004975 1.1e-65 253.1 125 100.0
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 2.2e-08 62.8 89 44.9
Prupe.1G206900 Prunus persica HOM05D004197 ORTHO05D004975 3.7e-08 62.0 38 73.7
Aqoxy7G00569 Aquilegia oxysepala HOM05D004197 ORTHO05D004975 4.9e-08 61.6 89 42.7
Cc03_g14030 Coffea canephora HOM05D004197 ORTHO05D004975 6.4e-08 61.2 35 80.0
FvH4_7g06200 Fragaria vesca HOM05D004197 ORTHO05D004975 6.4e-08 61.2 38 71.1
FAN01G1948 Fragaria x ananassa HOM05D004197 ORTHO05D004975 6.4e-08 61.2 38 71.1
FAN03G3355 Fragaria x ananassa HOM05D004197 ORTHO05D004975 6.4e-08 61.2 38 71.1
FAN06G1493 Fragaria x ananassa HOM05D004197 ORTHO05D004975 6.4e-08 61.2 38 71.1
Nn1g09691 Nelumbo nucifera HOM05D004197 ORTHO05D004975 6.4e-08 61.2 35 80.0
PSO832G1844 Papaver somniferum HOM05D004197 ORTHO05D004975 6.4e-08 61.2 92 41.3
Rhsim02G0084000 Rhododendron simsii HOM05D004197 ORTHO05D004975 6.4e-08 61.2 35 80.0
Rhsim03G0176800 Rhododendron simsii HOM05D004197 ORTHO05D004975 6.4e-08 61.2 35 80.0
RcHm_v2.0_Chr1g0333831 Rosa chinensis HOM05D004197 ORTHO05D004975 6.4e-08 61.2 38 71.1
EL10Ac6g15364 Beta vulgaris HOM05D004197 ORTHO05D004975 8.3e-08 60.8 35 80.0
CDE02G1869 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 8.3e-08 60.8 35 77.1
Lsat_1_v5_gn_5_190681 Lactuca sativa HOM05D004197 ORTHO05D004975 8.3e-08 60.8 89 42.7
PSO591G0183 Papaver somniferum HOM05D004197 ORTHO05D004975 8.3e-08 60.8 41 68.3
CAN.G525.23 Capsicum annuum HOM05D004197 ORTHO05D004975 1.1e-07 60.5 38 73.7
Cpa.g.sc10.180 Carica papaya HOM05D004197 ORTHO05D004975 1.1e-07 60.5 35 77.1
HanXRQChr10g0286001 Helianthus annuus HOM05D004197 ORTHO05D004975 1.1e-07 60.5 35 77.1
PSO017G5565 Papaver somniferum HOM05D004197 ORTHO05D004975 1.1e-07 60.5 41 68.3
PSO675G0737 Papaver somniferum HOM05D004197 ORTHO05D004975 1.1e-07 60.5 41 68.3
SalBow6G6028 Salvia bowleyana HOM05D004197 ORTHO05D004975 1.1e-07 60.5 38 73.7
MELO3C017759.2 Cucumis melo HOM05D004197 ORTHO05D004975 1.4e-07 60.1 35 74.3
DCAR_009572 Daucus carota HOM05D004197 ORTHO05D004975 1.4e-07 60.1 38 73.7
DCAR_029674 Daucus carota HOM05D004197 ORTHO05D004975 1.4e-07 60.1 38 73.7
Duzib151G0052 Durio zibethinus HOM05D004197 ORTHO05D004975 1.4e-07 60.1 35 77.1
Duzib212G0574 Durio zibethinus HOM05D004197 ORTHO05D004975 1.4e-07 60.1 35 77.1
Gohir.A10G143100 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.4e-07 60.1 35 77.1
Gohir.D04G047600 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.4e-07 60.1 35 77.1
Gohir.D10G123800 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.4e-07 60.1 35 77.1
Gorai.011G136700 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.4e-07 60.1 35 77.1
Gorai.012G053000 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.4e-07 60.1 35 77.1
Hma1.2p1_0307F.1_g119895 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 1.4e-07 60.1 35 77.1
Oeu016610.1 Olea europaea HOM05D004197 ORTHO05D004975 1.4e-07 60.1 37 73.0
Cc02_g26370 Coffea canephora HOM05D004197 ORTHO05D004975 1.9e-07 59.7 35 77.1
Lsat_1_v5_gn_6_33001 Lactuca sativa HOM05D004197 ORTHO05D004975 1.9e-07 59.7 35 77.1
MD08G1230600 Malus domestica HOM05D004197 ORTHO05D004975 1.9e-07 59.7 38 71.1
Nitab4.5_0000902g0310 Nicotiana tabacum HOM05D004197 ORTHO05D004975 1.9e-07 59.7 38 71.1
Nitab4.5_0007872g0010 Nicotiana tabacum HOM05D004197 ORTHO05D004975 1.9e-07 59.7 38 71.1
Peaxi162Scf00196g00222 Petunia axillaris HOM05D004197 ORTHO05D004975 1.9e-07 59.7 38 71.1
MSTRG.27564 Avicennia marina HOM05D004197 ORTHO05D004975 2.4e-07 59.3 38 71.1
Dinv33200 Davidia involucrata HOM05D004197 ORTHO05D004975 2.4e-07 59.3 34 79.4
ECA240G1468 Erigeron canadensis HOM05D004197 ORTHO05D004975 3.2e-07 58.9 35 74.3
Gorai.004G083000 Gossypium raimondii HOM05D004197 ORTHO05D004975 3.2e-07 58.9 35 74.3
HanXRQChr09g0264591 Helianthus annuus HOM05D004197 ORTHO05D004975 3.2e-07 58.9 35 74.3
QL10p055721 Quercus lobata HOM05D004197 ORTHO05D004975 3.2e-07 58.9 35 74.3
Solyc04g014390.3 Solanum lycopersicum HOM05D004197 ORTHO05D004975 3.2e-07 58.9 38 71.1
Sopen04g006520 Solanum pennellii HOM05D004197 ORTHO05D004975 3.2e-07 58.9 38 71.1
PGSC0003DMG401023624 Solanum tuberosum HOM05D004197 ORTHO05D004975 3.2e-07 58.9 38 71.1
Atru.chr12.1293 Acer truncatum HOM05D004197 ORTHO05D004975 4.1e-07 58.5 35 74.3
Atru.chr12.1301 Acer truncatum HOM05D004197 ORTHO05D004975 4.1e-07 58.5 35 74.3
Atru.chr4.2919 Acer truncatum HOM05D004197 ORTHO05D004975 4.1e-07 58.5 35 74.3
Ah.13g073520 Amaranthus hybridus HOM05D004197 ORTHO05D004975 4.1e-07 58.5 35 80.0
CiPaw.11G096400 Carya illinoinensis HOM05D004197 ORTHO05D004975 4.1e-07 58.5 35 74.3
Ciclev10022904m.g Citrus clementina HOM05D004197 ORTHO05D004975 4.1e-07 58.5 35 77.1
Gohir.A05G367700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 4.1e-07 58.5 34 76.5
Gohir.D10G075200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 4.1e-07 58.5 35 74.3
Gorai.005G151300 Gossypium raimondii HOM05D004197 ORTHO05D004975 4.1e-07 58.5 35 74.3
Hund04335 Selenicereus undatus HOM05D004197 ORTHO05D004975 4.1e-07 58.5 35 74.3
Thecc.04G166300 Theobroma cacao HOM05D004197 ORTHO05D004975 4.1e-07 58.5 35 74.3
ATR0733G162 Amborella trichopoda HOM05D004197 ORTHO05D004975 5.4e-07 58.2 35 77.1
EL10Ac3g06082 Beta vulgaris HOM05D004197 ORTHO05D004975 5.4e-07 58.2 35 77.1
CiPaw.12G066300 Carya illinoinensis HOM05D004197 ORTHO05D004975 5.4e-07 58.2 35 74.3
Os03g0207250 Oryza sativa ssp. japonica HOM05D004197 ORTHO05D004975 5.4e-07 58.2 35 74.3
Zm00001eb007240 Zea mays HOM05D004197 ORTHO05D004975 5.4e-07 58.2 89 40.4
Zm00001eb400580 Zea mays HOM05D004197 ORTHO05D004975 5.4e-07 58.2 35 74.3
ClCG07G015230 Citrullus lanatus HOM05D004197 ORTHO05D004975 7.1e-07 57.8 35 71.4
CsaV3_4G002820 Cucumis sativus L. HOM05D004197 ORTHO05D004975 7.1e-07 57.8 35 71.4
ECA247G1539 Erigeron canadensis HOM05D004197 ORTHO05D004975 7.1e-07 57.8 33 78.8
Gohir.D02G135200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 7.1e-07 57.8 35 74.3
Gohir.D08G078000 Gossypium hirsutum HOM05D004197 ORTHO05D004975 7.1e-07 57.8 35 74.3
Psat4g166320 Pisum sativum HOM05D004197 ORTHO05D004975 7.1e-07 57.8 35 77.1
QL04p073242 Quercus lobata HOM05D004197 ORTHO05D004975 7.1e-07 57.8 35 74.3
Sed0002539 Sechium edule HOM05D004197 ORTHO05D004975 7.1e-07 57.8 35 74.3
Atru.chr12.1273 Acer truncatum HOM05D004197 ORTHO05D004975 9.2e-07 57.4 35 71.4
CSS0039414 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 9.2e-07 57.4 35 71.4
CSS0047181 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 9.2e-07 57.4 35 71.4
Ca_10539_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 9.2e-07 57.4 35 77.1
Ca_23424_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 9.2e-07 57.4 35 77.1
Glyma.07G044001 Glycine max HOM05D004197 ORTHO05D004975 9.2e-07 57.4 80 43.8
Medtr8g022770 Medicago truncatula HOM05D004197 ORTHO05D004975 9.2e-07 57.4 35 77.1
Psat1g223520 Pisum sativum HOM05D004197 ORTHO05D004975 9.2e-07 57.4 35 77.1
TPR.G16667 Trifolium pratense HOM05D004197 ORTHO05D004975 9.2e-07 57.4 35 77.1
CANSAT80G2644 Cannabis sativa HOM05D004197 ORTHO05D004975 1.2e-06 57.0 38 65.8
CARHR099320 Cardamine hirsuta HOM05D004197 ORTHO05D004975 1.2e-06 57.0 35 74.3
Cfa015042 Carpinus fangiana HOM05D004197 ORTHO05D004975 1.2e-06 57.0 35 74.3
Eucgr.G02225 Eucalyptus grandis HOM05D004197 ORTHO05D004975 1.2e-06 57.0 35 74.3
Gorai.011G081000 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.2e-06 57.0 35 74.3
THA.LOC104804007 Tarenaya hassleriana HOM05D004197 ORTHO05D004975 1.2e-06 57.0 89 38.2
TWI32G1250 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 1.2e-06 57.0 35 74.3
TWI34G1638 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 1.2e-06 57.0 35 74.3
AUR62002389 Chenopodium quinoa HOM05D004197 ORTHO05D004975 1.6e-06 56.6 35 77.1
AUR62023799 Chenopodium quinoa HOM05D004197 ORTHO05D004975 1.6e-06 56.6 35 77.1
Aa31LG10G13940 Aethionema arabicum HOM05D004197 ORTHO05D004975 2.1e-06 56.2 38 68.4
arahy.Tifrunner.gnm1.ann1.4JR04K Arachis hypogaea HOM05D004197 ORTHO05D004975 2.1e-06 56.2 38 71.1
arahy.Tifrunner.gnm1.ann1.5DCW4K Arachis hypogaea HOM05D004197 ORTHO05D004975 2.1e-06 56.2 38 71.1
arahy.Tifrunner.gnm1.ann1.E9H45Q Arachis hypogaea HOM05D004197 ORTHO05D004975 2.1e-06 56.2 38 71.1
Lj3g0000340 Lotus japonicus HOM05D004197 ORTHO05D004975 2.1e-06 56.2 35 74.3
HPP92_007604 Vanilla planifolia HOM05D004197 ORTHO05D004975 2.1e-06 56.2 35 74.3
GSVIVG01038138001 Vitis vinifera HOM05D004197 ORTHO05D004975 2.1e-06 56.2 38 68.4
AL5G41720 Arabidopsis lyrata HOM05D004197 ORTHO05D004975 2.7e-06 55.8 35 71.4
AT3G59650 Arabidopsis thaliana HOM05D004197 ORTHO05D004975 2.7e-06 55.8 35 71.4
BcaB02g07455 Brassica carinata HOM05D004197 ORTHO05D004975 2.7e-06 55.8 35 71.4
BcaC07g40496 Brassica carinata HOM05D004197 ORTHO05D004975 2.7e-06 55.8 35 71.4
BcaC08g44998 Brassica carinata HOM05D004197 ORTHO05D004975 2.7e-06 55.8 35 71.4
A07p24720 Brassica napus HOM05D000455 ORTHO05D000434 2.7e-06 55.8 35 71.4
A09p51920 Brassica napus HOM05D004197 ORTHO05D004975 2.7e-06 55.8 35 71.4
C06p26290 Brassica napus HOM05D000455 ORTHO05D000434 2.7e-06 55.8 35 71.4
C08p34650 Brassica napus HOM05D004197 ORTHO05D004975 2.7e-06 55.8 35 71.4
BolC6t37793H Brassica oleracea HOM05D004197 ORTHO05D004975 2.7e-06 55.8 35 71.4
BolC8t51067H Brassica oleracea HOM05D004197 ORTHO05D004975 2.7e-06 55.8 35 71.4
BraA07t30117Z Brassica rapa HOM05D004197 ORTHO05D004975 2.7e-06 55.8 35 71.4
BraA09t40628Z Brassica rapa HOM05D004197 ORTHO05D004975 2.7e-06 55.8 35 71.4
Carub.0005s2637 Capsella rubella HOM05D004197 ORTHO05D004975 2.7e-06 55.8 35 71.4
CARHR170020 Cardamine hirsuta HOM05D004197 ORTHO05D004975 2.7e-06 55.8 35 71.4
PGR142G4086 Punica granatum HOM05D004197 ORTHO05D004975 2.7e-06 55.8 35 71.4
Sp5g03530 Schrenkiella parvula HOM05D004197 ORTHO05D004975 2.7e-06 55.8 35 71.4
Migut.F01587 Erythranthe guttata HOM05D004197 ORTHO05D004975 3.5e-06 55.5 38 68.4
Phvul.003G238300 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 3.5e-06 55.5 35 71.4
VMungo0251G3068 Vigna mungo HOM05D004197 ORTHO05D004975 3.5e-06 55.5 35 71.4
Thhalv10006316m.g Eutrema salsugineum HOM05D004197 ORTHO05D004975 4.6e-06 55.1 35 71.4
SalBow2G3321 Salvia bowleyana HOM05D004197 ORTHO05D004975 4.6e-06 55.1 38 68.4
Lj1g0017974 Lotus japonicus HOM05D004197 ORTHO05D004975 6.0e-06 54.7 32 78.1
Sp2g07880 Schrenkiella parvula HOM05D004197 ORTHO05D004975 6.0e-06 54.7 35 71.4
unitig_899.g14470 Utricularia gibba HOM05D004197 ORTHO05D004975 6.0e-06 54.7 38 65.8
Glyma.17G164900 Glycine max HOM05D004197 ORTHO05D004975 7.8e-06 54.3 32 75.0
Potri.013G126200 Populus trichocarpa HOM05D004197 ORTHO05D004975 7.8e-06 54.3 35 71.4


User provided reference genes

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