Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G087500 Theobroma cacao HOM05D012232 ORTHO05D013262 3.5e-36 154.5 80 100.0
Thecc.06G174800 Theobroma cacao HOM05D012232 ORTHO05D013262 1.1e-34 149.4 80 96.2
Gohir.A05G156400 Gossypium hirsutum HOM05D012232 ORTHO05D013262 2.4e-24 115.2 82 76.8
Gohir.D05G159300 Gossypium hirsutum HOM05D012232 ORTHO05D013262 9.1e-24 113.2 82 74.4
COL.COLO4_31342 Corchorus olitorius HOM05D012232 ORTHO05D013262 5.3e-16 87.4 80 61.2
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 5.5e-13 77.4 64 65.6
Manes.17G053400 Manihot esculenta HOM05D012232 ORTHO05D013262 1.4e-11 72.8 82 47.6
Manes.16G036050 Manihot esculenta HOM05D012232 ORTHO05D013262 1.1e-10 69.7 73 52.1
CSS0007483 Camellia sinensis var. sinensis HOM05D012232 ORTHO05D013262 2.6e-10 68.6 81 45.7
Potri.011G063750 Populus trichocarpa HOM05D012232 ORTHO05D013262 3.3e-10 68.2 82 46.3
QL05p044725 Quercus lobata HOM05D019009 ORTHO05D013262 1.1e-08 63.2 84 45.2
A04p23850 Brassica napus HOM05D008879 ORTHO05D010552 1.6e-07 59.3 83 43.4
BraA04t17908Z Brassica rapa HOM05D008879 ORTHO05D010552 1.6e-07 59.3 83 43.4
Lsat_1_v5_gn_7_23461 Lactuca sativa HOM05D012232 ORTHO05D010552 2.7e-07 58.5 81 44.4
CSS0029563 Camellia sinensis var. sinensis HOM05D012232 ORTHO05D010552 1.0e-06 56.6 84 41.7
CSS0045732 Camellia sinensis var. sinensis HOM05D012232 ORTHO05D010552 1.0e-06 56.6 84 41.7
Thhalv10017588m.g Eutrema salsugineum HOM05D008879 ORTHO05D010552 1.3e-06 56.2 83 39.8
FAN11G0075 Fragaria x ananassa HOM05D019009 ORTHO05D013262 1.3e-06 56.2 76 47.4
FAN16G0621 Fragaria x ananassa HOM05D019009 ORTHO05D013262 1.3e-06 56.2 76 47.4
BcaB06g28488 Brassica carinata HOM05D008879 ORTHO05D010552 1.7e-06 55.8 83 42.2
C04p60330 Brassica napus HOM05D008879 ORTHO05D010552 1.7e-06 55.8 83 42.2
BolC4t27533H Brassica oleracea HOM05D008879 ORTHO05D010552 1.7e-06 55.8 83 42.2
FAN21G0840 Fragaria x ananassa HOM05D019009 ORTHO05D013262 2.2e-06 55.5 85 40.0
TAR624G1413 Trochodendron aralioides HOM05D000001 ORTHO05D000003 2.2e-06 55.5 82 41.5
FAN25G0794 Fragaria x ananassa HOM05D019009 ORTHO05D013262 3.8e-06 54.7 76 46.1
Sp4g13570 Schrenkiella parvula HOM05D008879 ORTHO05D010552 3.8e-06 54.7 83 38.6
BcaB06g28411 Brassica carinata HOM05D008879 ORTHO05D010552 5.0e-06 54.3 83 39.8
Sabra11G0045500 Salix brachista HOM05D012232 ORTHO05D013262 6.5e-06 53.9 82 39.0


User provided reference genes

Program Settings