Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G077400 Theobroma cacao HOM05D003292 ORTHO05D037436 7.0e-72 273.9 140 100.0
COL.COLO4_38472 Corchorus olitorius HOM05D003292 ORTHO05D004237 2.5e-37 159.1 90 88.9
Thecc.10G078500 Theobroma cacao HOM05D003292 ORTHO05D004237 5.6e-37 157.9 90 90.0
Duzib128G0335 Durio zibethinus HOM05D003292 ORTHO05D004237 9.6e-37 157.1 90 88.9
Gohir.D10G212500 Gossypium hirsutum HOM05D003292 ORTHO05D004237 1.3e-36 156.8 90 88.9
Gorai.011G238300 Gossypium raimondii HOM05D003292 ORTHO05D004237 3.6e-36 155.2 90 87.8
Gorai.009G312500 Gossypium raimondii HOM05D003292 ORTHO05D004237 2.4e-35 152.5 90 85.6
QL08p055153 Quercus lobata HOM05D003292 ORTHO05D004237 2.4e-35 152.5 90 83.3
Actinidia06753 Actinidia chinensis HOM05D003292 ORTHO05D004237 4.0e-35 151.8 90 83.3
Manes.07G096900 Manihot esculenta HOM05D003292 ORTHO05D004237 4.0e-35 151.8 90 83.3
Gohir.A05G295200 Gossypium hirsutum HOM05D003292 ORTHO05D004237 6.9e-35 151.0 90 84.4
ATR0680G328 Amborella trichopoda HOM05D003292 ORTHO05D004237 9.0e-35 150.6 90 82.2
Ca_10553_v3 Cicer arietinum L. HOM05D003292 ORTHO05D004237 9.0e-35 150.6 89 83.1
Gohir.D05G295900 Gossypium hirsutum HOM05D003292 ORTHO05D004237 9.0e-35 150.6 90 84.4
TPR.G1911 Trifolium pratense HOM05D003292 ORTHO05D004237 9.0e-35 150.6 90 82.2
Dinv32702 Davidia involucrata HOM05D003292 ORTHO05D004237 1.2e-34 150.2 90 82.2
Eucgr.G02857 Eucalyptus grandis HOM05D003292 ORTHO05D004237 1.2e-34 150.2 90 82.2
arahy.Tifrunner.gnm1.ann1.PCB8SU Arachis hypogaea HOM05D003292 ORTHO05D004237 1.5e-34 149.8 90 82.2
arahy.Tifrunner.gnm1.ann1.V0NN3N Arachis hypogaea HOM05D003292 ORTHO05D004237 1.5e-34 149.8 90 82.2
CSS0007603 Camellia sinensis var. sinensis HOM05D003292 ORTHO05D004237 1.5e-34 149.8 90 81.1
Rhsim02G0095100 Rhododendron simsii HOM05D003292 ORTHO05D004237 2.0e-34 149.4 90 78.9
Rhsim09G0149700 Rhododendron simsii HOM05D003292 ORTHO05D004237 2.0e-34 149.4 90 78.9
Cpa.g.sc53.98 Carica papaya HOM05D003292 ORTHO05D004237 2.6e-34 149.1 90 84.4
HanXRQChr14g0456221 Helianthus annuus HOM05D003292 ORTHO05D004237 2.6e-34 149.1 90 80.0
Manes.07G095828 Manihot esculenta HOM05D003292 ORTHO05D004237 2.6e-34 149.1 90 81.1
Os02g0745000 Oryza sativa ssp. japonica HOM05D003292 ORTHO05D004237 2.6e-34 149.1 90 80.0
Potri.008G037100 Populus trichocarpa HOM05D003292 ORTHO05D004237 2.6e-34 149.1 90 80.0
Lj5g0020782 Lotus japonicus HOM05D003292 ORTHO05D004237 3.4e-34 148.7 90 81.1
Manes.07G095808 Manihot esculenta HOM05D003292 ORTHO05D004237 3.4e-34 148.7 90 81.1
Sabra08G0025000 Salix brachista HOM05D003292 ORTHO05D004237 4.5e-34 148.3 90 80.0
vmacro04854 Vaccinium macrocarpon HOM05D003292 ORTHO05D004237 4.5e-34 148.3 90 80.0
CSS0003969 Camellia sinensis var. sinensis HOM05D003292 ORTHO05D004237 7.6e-34 147.5 90 78.9
CANSAT56G2535 Cannabis sativa HOM05D003292 ORTHO05D004237 7.6e-34 147.5 90 82.2
ECA238G4082 Erigeron canadensis HOM05D003292 ORTHO05D004237 7.6e-34 147.5 90 78.9
Lalb_Chr06g0170371 Lupinus albus HOM05D003292 ORTHO05D004237 9.9e-34 147.1 90 80.0
Potri.010G225100 Populus trichocarpa HOM05D003292 ORTHO05D004237 9.9e-34 147.1 90 77.8
FvH4_7g18990 Fragaria vesca HOM05D003292 ORTHO05D004237 1.3e-33 146.7 90 78.9
FAN06G1207 Fragaria x ananassa HOM05D003292 ORTHO05D004237 1.3e-33 146.7 90 78.9
Glyma.10G209300 Glycine max HOM05D003292 ORTHO05D004237 1.3e-33 146.7 90 78.9
Medtr1g094680 Medicago truncatula HOM05D003292 ORTHO05D004237 1.3e-33 146.7 90 78.9
TAR633G2338 Trochodendron aralioides HOM05D003292 ORTHO05D004237 1.7e-33 146.4 90 78.9
Phvul.007G096800 Phaseolus vulgaris HOM05D003292 ORTHO05D004237 2.2e-33 146.0 90 78.9
Sc06g0001710 Simmondsia chinensis HOM05D003292 ORTHO05D004237 2.2e-33 146.0 90 80.0
VMungo0720G0781 Vigna mungo HOM05D003292 ORTHO05D004237 2.2e-33 146.0 90 78.9
MSTRG.27476 Avicennia marina HOM05D003292 ORTHO05D004237 2.9e-33 145.6 90 78.9
ClCG05G021130 Citrullus lanatus HOM05D003292 ORTHO05D004237 2.9e-33 145.6 90 78.9
CsaV3_5G036130 Cucumis sativus L. HOM05D003292 ORTHO05D004237 2.9e-33 145.6 90 78.9
PGR142G1202 Punica granatum HOM05D003292 ORTHO05D004237 2.9e-33 145.6 90 80.0
TWI38G0463 Tripterygium wilfordii HOM05D003292 ORTHO05D004237 2.9e-33 145.6 90 77.8
FAN06G0522 Fragaria x ananassa HOM05D003292 ORTHO05D004237 3.8e-33 145.2 90 77.8
FAN10G0369 Fragaria x ananassa HOM05D003292 ORTHO05D004237 3.8e-33 145.2 90 77.8
Glyma.20G181300 Glycine max HOM05D003292 ORTHO05D004237 3.8e-33 145.2 90 76.7
Hma1.2p1_1458F.1_g284800 Hydrangea macrophylla HOM05D003292 ORTHO05D004237 4.9e-33 144.8 89 79.8
Sabra10G0174000 Salix brachista HOM05D003292 ORTHO05D004237 4.9e-33 144.8 90 75.6
Lj2A17G38 Lonicera japonica HOM05D003292 ORTHO05D004237 6.4e-33 144.4 90 76.7
PSO063G0716 Papaver somniferum HOM05D003292 ORTHO05D004237 6.4e-33 144.4 90 78.9
PSO339G5193 Papaver somniferum HOM05D003292 ORTHO05D004237 6.4e-33 144.4 90 78.9
Aqoxy1G01184 Aquilegia oxysepala HOM05D003292 ORTHO05D004237 8.4e-33 144.1 90 77.8
CiPaw.01G270600 Carya illinoinensis HOM05D003292 ORTHO05D004237 8.4e-33 144.1 90 81.1
CiPaw.02G172900 Carya illinoinensis HOM05D003292 ORTHO05D004237 8.4e-33 144.1 90 78.9
MELO3C012414.2 Cucumis melo HOM05D003292 ORTHO05D004237 8.4e-33 144.1 90 77.8
Atru.chr12.818 Acer truncatum HOM05D003292 ORTHO05D004237 1.1e-32 143.7 90 78.9
FAN06G4609 Fragaria x ananassa HOM05D003292 ORTHO05D004237 1.1e-32 143.7 90 77.8
THA.LOC104823204 Tarenaya hassleriana HOM05D003292 ORTHO05D004237 1.1e-32 143.7 90 77.8
TWI79G1368 Tripterygium wilfordii HOM05D003292 ORTHO05D004237 1.1e-32 143.7 90 76.7
GSVIVG01016242001 Vitis vinifera HOM05D003292 ORTHO05D004237 1.1e-32 143.7 90 76.7
Ah.03g136830 Amaranthus hybridus HOM05D003292 ORTHO05D004237 1.4e-32 143.3 91 76.9
Prupe.2G211000 Prunus persica HOM05D003292 ORTHO05D004237 1.4e-32 143.3 90 78.9
CDE06G2226 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 1.9e-32 142.9 90 76.7
AUR62043812 Chenopodium quinoa HOM05D003292 ORTHO05D004237 1.9e-32 142.9 90 75.6
Sed0016709 Sechium edule HOM05D003292 ORTHO05D004237 1.9e-32 142.9 90 76.7
FAN03G0674 Fragaria x ananassa HOM05D003292 ORTHO05D004237 2.4e-32 142.5 90 75.6
Nn2g11538 Nelumbo nucifera HOM05D003292 ORTHO05D004237 2.4e-32 142.5 90 78.9
HPP92_013048 Vanilla planifolia HOM05D003292 ORTHO05D004237 2.4e-32 142.5 90 75.6
Actinidia22439 Actinidia chinensis HOM05D003292 ORTHO05D004237 3.2e-32 142.1 90 80.0
CSS0026427 Camellia sinensis var. sinensis HOM05D003292 ORTHO05D004237 3.2e-32 142.1 90 78.9
RcHm_v2.0_Chr1g0362921 Rosa chinensis HOM05D003292 ORTHO05D004237 4.2e-32 141.7 90 77.8
Sp3g08620 Schrenkiella parvula HOM05D003292 ORTHO05D004237 4.2e-32 141.7 90 75.6
CSS0026599 Camellia sinensis var. sinensis HOM05D003292 ORTHO05D004237 5.4e-32 141.4 90 78.9
EL10Ac6g14147 Beta vulgaris HOM05D003292 ORTHO05D004237 7.1e-32 141.0 90 77.8
CAN.G476.2 Capsicum annuum HOM05D003292 ORTHO05D004237 7.1e-32 141.0 90 77.8
BcaB04g21216 Brassica carinata HOM05D003292 ORTHO05D004237 9.3e-32 140.6 90 75.6
BcaB04g21217 Brassica carinata HOM05D003292 ORTHO05D004237 9.3e-32 140.6 90 75.6
BcaC09g48102 Brassica carinata HOM05D003292 ORTHO05D004237 9.3e-32 140.6 90 75.6
A01p41910 Brassica napus HOM05D003292 ORTHO05D004237 9.3e-32 140.6 90 75.6
BolC1t05407H Brassica oleracea HOM05D003292 ORTHO05D004237 9.3e-32 140.6 90 75.6
BraA01t04260Z Brassica rapa HOM05D003292 ORTHO05D004237 9.3e-32 140.6 90 75.6
Ciclev10030991m.g Citrus clementina HOM05D003292 ORTHO05D004237 9.3e-32 140.6 90 76.7
THA.LOC104799512 Tarenaya hassleriana HOM05D003292 ORTHO05D004237 9.3e-32 140.6 90 73.3
AL3G21680 Arabidopsis lyrata HOM05D003292 ORTHO05D004237 1.2e-31 140.2 90 75.6
MD01G1105500 Malus domestica HOM05D003292 ORTHO05D004237 1.2e-31 140.2 90 76.7
Thecc.10G078000 Theobroma cacao HOM05D003292 ORTHO05D410035 1.2e-31 140.2 89 82.0
Carub.0003s0953 Capsella rubella HOM05D003292 ORTHO05D004237 1.6e-31 139.8 90 74.4
AT3G10350 Arabidopsis thaliana HOM05D003292 ORTHO05D004237 2.1e-31 139.4 90 74.4
BcaC05g29475 Brassica carinata HOM05D003292 ORTHO05D004237 2.1e-31 139.4 90 74.4
A05p38800 Brassica napus HOM05D003292 ORTHO05D004237 2.1e-31 139.4 90 74.4
BolC5t34438H Brassica oleracea HOM05D003292 ORTHO05D004237 2.1e-31 139.4 90 74.4
BraA05t22671Z Brassica rapa HOM05D003292 ORTHO05D004237 2.1e-31 139.4 90 74.4
Duzib168G0106 Durio zibethinus HOM05D003292 ORTHO05D004237 2.1e-31 139.4 89 74.2
Cc02_g11130 Coffea canephora HOM05D003292 ORTHO05D004237 2.7e-31 139.0 90 74.4
Peaxi162Scf00115g01224 Petunia axillaris HOM05D003292 ORTHO05D004237 2.7e-31 139.0 90 76.7
MBI18_g21586_MAGBIO Magnolia biondii HOM05D003292 ORTHO05D004237 3.5e-31 138.7 90 75.6
Migut.D01651 Erythranthe guttata HOM05D003292 ORTHO05D004237 6.0e-31 137.9 90 75.6
Migut.F01967 Erythranthe guttata HOM05D003292 ORTHO05D004237 6.0e-31 137.9 90 75.6
Thhalv10020822m.g Eutrema salsugineum HOM05D003292 ORTHO05D004237 6.0e-31 137.9 90 73.3
GSVIVG01025229001 Vitis vinifera HOM05D003292 ORTHO05D004237 7.9e-31 137.5 90 73.3
ECA238G1658 Erigeron canadensis HOM05D003292 ORTHO05D004237 1.0e-30 137.1 90 71.1
Nitab4.5_0002194g0030 Nicotiana tabacum HOM05D003292 ORTHO05D004237 1.0e-30 137.1 87 79.3
Actinidia24123 Actinidia chinensis HOM05D003292 ORTHO05D004237 1.3e-30 136.7 90 74.4
Migut.D02251 Erythranthe guttata HOM05D003292 ORTHO05D004237 1.3e-30 136.7 90 75.6
vmacro03221 Vaccinium macrocarpon HOM05D003292 ORTHO05D004237 1.3e-30 136.7 90 76.7
Atru.chr3.3588 Acer truncatum HOM05D003292 ORTHO05D004237 1.8e-30 136.3 90 74.4
Ciclev10028528m.g Citrus clementina HOM05D003292 ORTHO05D004237 2.3e-30 136.0 90 71.1
Nitab4.5_0007148g0070 Nicotiana tabacum HOM05D003292 ORTHO05D004237 2.3e-30 136.0 99 71.7
Gohir.D05G105800 Gossypium hirsutum HOM05D003292 ORTHO05D004237 3.0e-30 135.6 90 73.3
HanXRQChr14g0452611 Helianthus annuus HOM05D003292 ORTHO05D004237 3.0e-30 135.6 90 73.3
Peaxi162Scf00431g00110 Petunia axillaris HOM05D003292 ORTHO05D004237 3.0e-30 135.6 90 74.4
Gorai.009G109800 Gossypium raimondii HOM05D003292 ORTHO05D004237 3.9e-30 135.2 90 73.3
Lsat_1_v5_gn_2_99761 Lactuca sativa HOM05D003292 ORTHO05D004237 3.9e-30 135.2 90 71.1
Pp3c22_13860 Physcomitrium patens HOM05D003292 ORTHO05D004237 3.9e-30 135.2 90 68.9
unitig_46.g18600 Utricularia gibba HOM05D003292 ORTHO05D004237 3.9e-30 135.2 90 75.6
C05p57830 Brassica napus HOM05D003292 ORTHO05D004237 5.1e-30 134.8 90 73.3
CDE02G4294 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 5.1e-30 134.8 90 71.1
Gohir.A05G105750 Gossypium hirsutum HOM05D003292 ORTHO05D004237 5.1e-30 134.8 90 73.3
CAN.G1358.5 Capsicum annuum HOM05D003292 ORTHO05D004237 6.7e-30 134.4 90 73.3
Mapoly0037s0120 Marchantia polymorpha HOM05D003292 ORTHO05D004237 8.7e-30 134.0 90 72.2
COL.COLO4_18292 Corchorus olitorius HOM05D003292 ORTHO05D004237 4.3e-29 131.7 90 73.3
AT5G60730 Arabidopsis thaliana HOM05D003292 ORTHO05D004237 5.6e-29 131.3 90 68.9
AL8G37320 Arabidopsis lyrata HOM05D003292 ORTHO05D004237 9.6e-29 130.6 90 68.9
Thhalv10013776m.g Eutrema salsugineum HOM05D003292 ORTHO05D004237 9.6e-29 130.6 90 68.9
BcaC03g13941 Brassica carinata HOM05D003292 ORTHO05D004237 1.6e-28 129.8 90 68.9
BNapus_Darmor_BZH_scaffold_38p00140 Brassica napus HOM05D003292 ORTHO05D004237 1.6e-28 129.8 90 68.9
BolC2t07224H Brassica oleracea HOM05D003292 ORTHO05D004237 1.6e-28 129.8 90 68.9
Lj3g0021738 Lotus japonicus HOM05D003292 ORTHO05D004237 1.6e-28 129.8 90 70.0
Sp6g22310 Schrenkiella parvula HOM05D003292 ORTHO05D004237 2.1e-28 129.4 90 68.9
Aa31LG3G2920 Aethionema arabicum HOM05D003292 ORTHO05D004237 2.8e-28 129.0 114 61.4
arahy.Tifrunner.gnm1.ann1.B3ZHWF Arachis hypogaea HOM05D003292 ORTHO05D004237 2.8e-28 129.0 90 70.0
MD07G1171700 Malus domestica HOM05D003292 ORTHO05D004237 2.8e-28 129.0 90 73.3
arahy.Tifrunner.gnm1.ann1.869HPH Arachis hypogaea HOM05D003292 ORTHO05D004237 3.6e-28 128.6 90 68.9
C02p11500 Brassica napus HOM05D003292 ORTHO05D004237 3.6e-28 128.6 90 67.8
Pp3c19_12470 Physcomitrium patens HOM05D003292 ORTHO05D004237 3.6e-28 128.6 90 65.6
Carub.0008s2141 Capsella rubella HOM05D003292 ORTHO05D004237 6.2e-28 127.9 90 67.8
Lalb_Chr01g0004461 Lupinus albus HOM05D003292 ORTHO05D004237 6.2e-28 127.9 90 68.9
Nitab4.5_0004479g0080 Nicotiana tabacum HOM05D003292 ORTHO05D004237 6.2e-28 127.9 96 69.8
Sopen11g028450 Solanum pennellii HOM05D003292 ORTHO05D004237 8.1e-28 127.5 90 68.9
PGSC0003DMG400008075 Solanum tuberosum HOM05D003292 ORTHO05D004237 8.1e-28 127.5 90 70.0
Oeu056299.2 Olea europaea HOM05D003292 ORTHO05D004237 1.4e-27 126.7 90 68.9
Solyc11g069830.2 Solanum lycopersicum HOM05D003292 ORTHO05D004237 1.4e-27 126.7 90 68.9
Gohir.A10G204500 Gossypium hirsutum HOM05D003292 ORTHO05D004237 1.8e-27 126.3 78 87.2
SGA_v2.0_scaffold180G39620 Striga asiatica HOM05D003292 ORTHO05D004237 1.8e-27 126.3 90 67.8
CBR_g19921 Chara braunii HOM05D003292 ORTHO05D004237 3.1e-27 125.6 90 65.6
Nitab4.5_0004126g0040 Nicotiana tabacum HOM05D003292 ORTHO05D004237 3.1e-27 125.6 87 72.4
Psat7g144400 Pisum sativum HOM05D003292 ORTHO05D004237 3.1e-27 125.6 90 66.7
Eucgr.J00904 Eucalyptus grandis HOM05D003292 ORTHO05D004237 5.3e-27 124.8 90 65.6
Nitab4.5_0004797g0010 Nicotiana tabacum HOM05D003292 ORTHO05D004237 5.3e-27 124.8 87 72.4
TPR.G6163 Trifolium pratense HOM05D003292 ORTHO05D004237 6.9e-27 124.4 90 67.8
SMO143G0002 Selaginella moellendorffii HOM05D003292 ORTHO05D004237 9.0e-27 124.0 90 65.6
Aa31LG1G12690 Aethionema arabicum HOM05D003292 ORTHO05D004237 1.2e-26 123.6 90 64.4
PGR119G0151 Punica granatum HOM05D003292 ORTHO05D004237 1.2e-26 123.6 90 66.7
DCAR_006075 Daucus carota HOM05D003292 ORTHO05D004237 1.5e-26 123.2 106 61.3
CARHR274410 Cardamine hirsuta HOM05D003292 ORTHO05D004237 3.4e-26 122.1 90 65.6
Haze_16867 Corylus avellana HOM05D003292 ORTHO05D004237 3.4e-26 122.1 76 84.2
Medtr4g058005 Medicago truncatula HOM05D003292 ORTHO05D004237 5.8e-26 121.3 90 66.7
BcaB05g22666 Brassica carinata HOM05D003292 ORTHO05D004237 4.9e-25 118.2 85 68.2
Cc01_g10790 Coffea canephora HOM05D003292 ORTHO05D004237 1.4e-24 116.7 100 60.0
Zm00001eb080780 Zea mays HOM05D003292 ORTHO05D004237 1.3e-22 110.2 90 57.8
Atru.chr4.431 Acer truncatum HOM05D003292 ORTHO05D004237 5.1e-22 108.2 87 67.8
Lsat_1_v5_gn_2_103060 Lactuca sativa HOM05D003292 ORTHO05D004237 1.5e-21 106.7 65 81.5
Oeu007406.1 Olea europaea HOM05D003292 ORTHO05D004237 7.4e-21 104.4 64 76.6
DCAR_006429 Daucus carota HOM05D003292 ORTHO05D004237 1.4e-19 100.1 90 55.6
Cpa.g.sc65.13 Carica papaya HOM05D003292 ORTHO05D004237 5.3e-19 98.2 91 58.2
MCO10G054 Micromonas commoda HOM05D003292 ORTHO05D004237 2.6e-18 95.9 89 56.2
Rhsim13G0097900 Rhododendron simsii HOM05D003292 ORTHO05D004237 4.9e-17 91.7 60 75.0
Cre05.g245158 Chlamydomonas reinhardtii HOM05D003292 ORTHO05D004237 3.2e-16 89.0 89 48.3
Cre24.g755097 Chlamydomonas reinhardtii HOM05D003292 ORTHO05D004237 3.2e-16 89.0 89 48.3
Solyc04g025120.2 Solanum lycopersicum HOM05D003292 ORTHO05D037436 5.7e-13 78.2 46 78.3
Sopen04g011540 Solanum pennellii HOM05D000006 ORTHO05D000001 5.7e-13 78.2 46 78.3
PRCOL_00003341 Prasinoderma coloniale HOM05D003292 ORTHO05D004237 9.6e-13 77.4 120 39.2
Manes.04G017100 Manihot esculenta HOM05D003292 ORTHO05D004237 1.8e-11 73.2 61 63.9
Solyc04g025160.3 Solanum lycopersicum HOM05D003292 ORTHO05D004237 3.1e-11 72.4 45 80.0
Sopen04g011550 Solanum pennellii HOM05D003292 ORTHO05D004237 3.1e-11 72.4 45 80.0
QL08p024183 Quercus lobata HOM05D003292 ORTHO05D037436 4.2e-08 62.0 55 61.8
BcaC09g50541 Brassica carinata HOM05D003292 ORTHO05D016764 1.2e-07 60.5 53 56.6
BcaNung01627 Brassica carinata HOM05D003292 ORTHO05D016764 3.9e-06 55.5 63 39.7
BcaNung01631 Brassica carinata HOM05D003292 ORTHO05D016764 3.9e-06 55.5 63 39.7


User provided reference genes

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