Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G074900 Theobroma cacao HOM05D002800 ORTHO05D021906 1.4e-47 192.6 93 100.0
Thecc.10G075100 Theobroma cacao HOM05D002800 ORTHO05D008563 3.4e-22 108.2 62 88.7
Gohir.D10G213700 Gossypium hirsutum HOM05D002800 ORTHO05D008563 1.7e-21 105.9 60 90.0
Gorai.011G239000 Gossypium raimondii HOM05D002800 ORTHO05D008563 1.7e-21 105.9 60 90.0
Sabra10G0172400 Salix brachista HOM05D002800 ORTHO05D008563 1.7e-21 105.9 61 86.9
Gohir.A10G205400 Gossypium hirsutum HOM05D002800 ORTHO05D008563 3.7e-21 104.8 60 88.3
Duzib106G1770 Durio zibethinus HOM05D002800 ORTHO05D008563 1.1e-20 103.2 60 86.7
Ciclev10031045m.g Citrus clementina HOM05D002800 ORTHO05D008563 2.4e-20 102.1 60 86.7
Atru.chr12.759 Acer truncatum HOM05D002800 ORTHO05D008563 3.2e-20 101.7 60 86.7
ClCG08G007530 Citrullus lanatus HOM05D002800 ORTHO05D008563 4.1e-20 101.3 60 81.7
PGR044G1821 Punica granatum HOM05D002800 ORTHO05D008563 5.4e-20 100.9 61 83.6
Atru.chr12.783 Acer truncatum HOM05D002800 ORTHO05D008563 7.1e-20 100.5 60 85.0
Manes.10G046600 Manihot esculenta HOM05D002800 ORTHO05D008563 7.1e-20 100.5 60 81.7
MELO3C019799.2 Cucumis melo HOM05D002800 ORTHO05D008563 9.2e-20 100.1 60 81.7
Oeu031346.1 Olea europaea HOM05D002800 ORTHO05D008563 9.2e-20 100.1 60 81.7
Sed0015272 Sechium edule HOM05D002800 ORTHO05D008563 9.2e-20 100.1 60 81.7
TWI15G0073 Tripterygium wilfordii HOM05D002800 ORTHO05D008563 9.2e-20 100.1 61 83.6
CSS0038780 Camellia sinensis var. sinensis HOM05D002800 ORTHO05D008563 1.6e-19 99.4 60 81.7
Cpa.g.sc53.86 Carica papaya HOM05D002800 ORTHO05D008563 1.6e-19 99.4 61 80.3
Haze_16886 Corylus avellana HOM05D002800 ORTHO05D008563 2.1e-19 99.0 60 83.3
Actinidia32447 Actinidia chinensis HOM05D002800 ORTHO05D008563 2.7e-19 98.6 60 81.7
CsaV3_6G036460 Cucumis sativus L. HOM05D002800 ORTHO05D008563 2.7e-19 98.6 60 80.0
Sc09g0006270 Simmondsia chinensis HOM05D002800 ORTHO05D008563 4.6e-19 97.8 60 80.0
GSVIVG01016267001 Vitis vinifera HOM05D002800 ORTHO05D008563 4.6e-19 97.8 61 78.7
Lj1C913T2 Lonicera japonica HOM05D002800 ORTHO05D008563 7.8e-19 97.1 60 80.0
PSO339G3461 Papaver somniferum HOM05D002800 ORTHO05D008563 7.8e-19 97.1 60 81.7
PSO384G1174 Papaver somniferum HOM05D002800 ORTHO05D008563 7.8e-19 97.1 60 81.7
Potri.010G223000 Populus trichocarpa HOM05D002800 ORTHO05D008563 7.8e-19 97.1 61 80.3
TAR369G0845 Trochodendron aralioides HOM05D002800 ORTHO05D008563 7.8e-19 97.1 60 78.3
Potri.008G039200 Populus trichocarpa HOM05D002800 ORTHO05D008563 1.0e-18 96.7 61 78.7
MD01G1108200 Malus domestica HOM05D002800 ORTHO05D008563 1.3e-18 96.3 60 81.7
Nn2g10811 Nelumbo nucifera HOM05D002800 ORTHO05D008563 1.3e-18 96.3 59 83.1
QL08p055739 Quercus lobata HOM05D002800 ORTHO05D008563 1.3e-18 96.3 60 81.7
Migut.F01983 Erythranthe guttata HOM05D002800 ORTHO05D008563 2.3e-18 95.5 60 76.7
Eucgr.J01084 Eucalyptus grandis HOM05D002800 ORTHO05D008563 2.3e-18 95.5 60 80.0
Aqoxy1G01227 Aquilegia oxysepala HOM05D002800 ORTHO05D008563 3.0e-18 95.1 60 80.0
CDE08G1164 Ceratophyllum demersum HOM05D002800 ORTHO05D008563 3.0e-18 95.1 60 80.0
ATR0048G007 Amborella trichopoda HOM05D002800 ORTHO05D008563 3.9e-18 94.7 60 78.3
CSS0042688 Camellia sinensis var. sinensis HOM05D002800 ORTHO05D008563 3.9e-18 94.7 60 78.3
THA.LOC104799379 Tarenaya hassleriana HOM05D002800 ORTHO05D008563 3.9e-18 94.7 61 80.3
Rhsim09G0151400 Rhododendron simsii HOM05D002800 ORTHO05D008563 5.1e-18 94.4 60 78.3
Ca_10569_v3 Cicer arietinum L. HOM05D002800 ORTHO05D008563 6.6e-18 94.0 61 75.4
Glyma.20G179900 Glycine max HOM05D002800 ORTHO05D008563 1.5e-17 92.8 59 78.0
SGA_v2.0_scaffold478G52239 Striga asiatica HOM05D002800 ORTHO05D008563 1.5e-17 92.8 59 76.3
unitig_8.g4691 Utricularia gibba HOM05D002800 ORTHO05D008563 1.5e-17 92.8 60 73.3
CANSAT56G2733 Cannabis sativa HOM05D002800 ORTHO05D008563 1.9e-17 92.4 60 80.0
HanXRQChr14g0456851 Helianthus annuus HOM05D002800 ORTHO05D008563 2.5e-17 92.0 60 76.7
Os07g0447800 Oryza sativa ssp. japonica HOM05D002800 ORTHO05D008563 2.5e-17 92.0 60 73.3
Prupe.2G213100 Prunus persica HOM05D002800 ORTHO05D008563 3.3e-17 91.7 60 78.3
SalBow4G0916 Salvia bowleyana HOM05D002800 ORTHO05D008563 4.3e-17 91.3 60 73.3
Solyc04g005030.4 Solanum lycopersicum HOM05D002800 ORTHO05D008563 5.6e-17 90.9 59 79.7
Sopen04g001040 Solanum pennellii HOM05D002800 ORTHO05D008563 5.6e-17 90.9 59 79.7
ECA238G0500 Erigeron canadensis HOM05D002800 ORTHO05D008563 7.3e-17 90.5 60 76.7
Glyma.10G210700 Glycine max HOM05D002800 ORTHO05D008563 7.3e-17 90.5 59 76.3
Psat6g183400 Pisum sativum HOM05D002800 ORTHO05D008563 7.3e-17 90.5 59 76.3
TPR.G1920 Trifolium pratense HOM05D002800 ORTHO05D008563 7.3e-17 90.5 59 76.3
Lsat_1_v5_gn_2_112341 Lactuca sativa HOM05D002800 ORTHO05D008563 9.6e-17 90.1 58 77.6
Zm00001eb306410 Zea mays HOM05D002800 ORTHO05D008563 9.6e-17 90.1 59 74.6
Cc02_g11310 Coffea canephora HOM05D002800 ORTHO05D008563 1.2e-16 89.7 60 73.3
Phvul.007G094900 Phaseolus vulgaris HOM05D002800 ORTHO05D008563 1.2e-16 89.7 59 76.3
Sabra08G0026900 Salix brachista HOM05D002800 ORTHO05D008563 1.2e-16 89.7 60 75.0
VMungo0720G2543 Vigna mungo HOM05D002800 ORTHO05D008563 1.6e-16 89.4 59 78.0
Medtr1g094980 Medicago truncatula HOM05D002800 ORTHO05D008563 2.1e-16 89.0 59 74.6
Carub.0006s1576 Capsella rubella HOM05D002800 ORTHO05D008563 3.6e-16 88.2 61 73.8
RcHm_v2.0_Chr1g0363251 Rosa chinensis HOM05D002800 ORTHO05D008563 3.6e-16 88.2 60 75.0
arahy.Tifrunner.gnm1.ann1.KPC10E Arachis hypogaea HOM05D002800 ORTHO05D008563 4.7e-16 87.8 60 73.3
Thhalv10012819m.g Eutrema salsugineum HOM05D002800 ORTHO05D008563 4.7e-16 87.8 61 73.8
Sp6g26690 Schrenkiella parvula HOM05D002800 ORTHO05D008563 4.7e-16 87.8 61 73.8
GSVIVG01001963001 Vitis vinifera HOM05D002800 ORTHO05D008563 4.7e-16 87.8 66 66.7
CARHR195660 Cardamine hirsuta HOM05D002800 ORTHO05D008563 8.1e-16 87.0 61 72.1
FAN03G0883 Fragaria x ananassa HOM05D002800 ORTHO05D008563 8.1e-16 87.0 60 76.7
Hund20229 Selenicereus undatus HOM05D002800 ORTHO05D008563 8.1e-16 87.0 59 72.9
PGSC0003DMG400001912 Solanum tuberosum HOM05D002800 ORTHO05D008563 8.1e-16 87.0 59 76.3
Aa31sc262G50 Aethionema arabicum HOM05D002800 ORTHO05D008563 1.1e-15 86.7 58 75.9
Ah.08g209400 Amaranthus hybridus HOM05D002800 ORTHO05D008563 1.1e-15 86.7 59 72.9
AL6G28620 Arabidopsis lyrata HOM05D002800 ORTHO05D008563 1.1e-15 86.7 61 72.1
Lalb_Chr06g0162361 Lupinus albus HOM05D002800 ORTHO05D008563 1.1e-15 86.7 61 72.1
Nitab4.5_0002524g0030 Nicotiana tabacum HOM05D002800 ORTHO05D008563 1.1e-15 86.7 59 76.3
Peaxi162Scf01011g00005 Petunia axillaris HOM05D002800 ORTHO05D008563 1.1e-15 86.7 59 76.3
A02p04250 Brassica napus HOM05D002800 ORTHO05D008563 1.4e-15 86.3 61 72.1
C02p09130 Brassica napus HOM05D002800 ORTHO05D008563 1.4e-15 86.3 61 72.1
FvH4_7g19370 Fragaria vesca HOM05D002800 ORTHO05D008563 1.4e-15 86.3 60 75.0
FAN06G4795 Fragaria x ananassa HOM05D002800 ORTHO05D008563 1.4e-15 86.3 60 75.0
EL10Ac7g17090 Beta vulgaris HOM05D002800 ORTHO05D008563 1.8e-15 85.9 59 72.9
arahy.Tifrunner.gnm1.ann1.681S5P Arachis hypogaea HOM05D002800 ORTHO05D008563 2.4e-15 85.5 60 70.0
CAN.G839.3 Capsicum annuum HOM05D002800 ORTHO05D008563 2.4e-15 85.5 59 74.6
FAN10G1943 Fragaria x ananassa HOM05D002800 ORTHO05D008563 2.4e-15 85.5 60 75.0
FAN10G3729 Fragaria x ananassa HOM05D002800 ORTHO05D008563 2.4e-15 85.5 60 75.0
BcaC05g28876 Brassica carinata HOM05D002800 ORTHO05D021906 3.1e-15 85.1 62 69.4
C05p49990 Brassica napus HOM05D002800 ORTHO05D021906 3.1e-15 85.1 62 69.4
AUR62006403 Chenopodium quinoa HOM05D002800 ORTHO05D008563 3.1e-15 85.1 59 72.9
MD07G1174300 Malus domestica HOM05D002800 ORTHO05D021906 3.1e-15 85.1 57 77.2
Nitab4.5_0001053g0080 Nicotiana tabacum HOM05D002800 ORTHO05D008563 4.0e-15 84.7 59 74.6
DCAR_006435 Daucus carota HOM05D002800 ORTHO05D008563 6.8e-15 84.0 60 66.7
AT5G17530 Arabidopsis thaliana HOM05D002800 ORTHO05D008563 1.2e-14 83.2 61 68.9
AUR62029746 Chenopodium quinoa HOM05D002800 ORTHO05D008563 1.5e-14 82.8 59 71.2
AagrBONN_evm.TU.Sc2ySwM_117.2596 Anthoceros agrestis HOM05D002800 ORTHO05D008563 2.6e-14 82.0 59 69.5
Pp3c20_2120 Physcomitrium patens HOM05D002800 ORTHO05D008563 2.6e-14 82.0 59 69.5
Lalb_Chr02g0142211 Lupinus albus HOM05D002800 ORTHO05D008563 4.4e-14 81.3 59 71.2
Mapoly0011s0106 Marchantia polymorpha HOM05D002800 ORTHO05D008563 1.3e-13 79.7 59 69.5
Lj5g0013059 Lotus japonicus HOM05D002800 ORTHO05D008563 1.7e-13 79.3 58 69.0
SMO144G0140 Selaginella moellendorffii HOM05D002800 ORTHO05D008563 3.5e-11 71.6 59 62.7
GSVIVG01032226001 Vitis vinifera HOM05D000869 ORTHO05D000685 4.3e-09 64.7 46 73.9
BolC2t06825H Brassica oleracea HOM05D002800 ORTHO05D008563 4.0e-07 58.2 47 63.8
BraA02t05388Z Brassica rapa HOM05D002800 ORTHO05D008563 4.0e-07 58.2 47 63.8


User provided reference genes

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