Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 1.3e-249 865.9 436 100.0
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 3.3e-237 824.7 436 94.5
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 4.5e-234 814.3 436 93.6
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 4.5e-234 814.3 436 93.6
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 6.5e-233 810.4 436 92.9
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 3.0e-230 801.6 436 93.1
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 3.3e-229 798.1 436 92.7
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 4.4e-221 771.2 436 89.0
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.4e-219 766.1 436 88.1
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 1.0e-214 750.0 440 87.5
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 1.4e-211 739.6 438 83.3
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 3.2e-208 728.4 436 83.5
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.2e-207 726.5 391 93.4
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 2.7e-207 725.3 431 83.1
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 4.7e-207 724.5 429 83.2
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 6.1e-207 724.2 429 83.2
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 8.0e-207 723.8 428 83.2
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 1.4e-206 723.0 429 83.0
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 2.3e-206 722.2 429 83.0
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 3.0e-206 721.8 429 83.0
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 4.0e-206 721.5 424 83.7
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 4.0e-206 721.5 429 83.0
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 4.0e-206 721.5 438 82.6
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 4.0e-206 721.5 429 83.0
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 8.8e-206 720.3 430 82.6
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 8.8e-206 720.3 430 82.6
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 8.8e-206 720.3 430 82.6
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 1.5e-205 719.5 429 82.8
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 2.6e-205 718.8 439 82.5
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 3.4e-205 718.4 428 82.7
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 3.4e-205 718.4 428 82.7
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 3.4e-205 718.4 436 81.9
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 9.8e-205 716.8 429 82.3
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 2.8e-204 715.3 424 82.5
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 3.7e-204 714.9 435 80.7
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 3.7e-204 714.9 434 82.0
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 8.3e-204 713.8 428 82.2
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 8.3e-204 713.8 425 82.1
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 5.4e-203 711.1 435 81.6
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 9.1e-203 710.3 434 80.2
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 1.6e-202 709.5 442 80.5
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 3.5e-202 708.4 425 81.6
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 7.7e-202 707.2 425 85.6
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 1.0e-201 706.8 426 82.2
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 1.3e-201 706.4 428 81.3
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.3e-201 705.7 426 82.6
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 3.8e-201 704.9 424 81.6
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 8.6e-201 703.7 428 81.3
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 1.1e-200 703.4 436 81.7
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 1.1e-200 703.4 424 82.5
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 1.1e-200 703.4 424 82.5
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 2.5e-200 702.2 440 79.1
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 3.3e-200 701.8 428 80.6
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 5.5e-200 701.0 439 80.9
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 7.2e-200 700.7 441 79.8
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 1.6e-199 699.5 427 80.8
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 2.1e-199 699.1 426 82.4
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.1e-199 699.1 426 82.2
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 2.8e-199 698.7 435 80.7
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 2.8e-199 698.7 439 79.5
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.7e-199 698.0 426 81.9
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 8.0e-199 697.2 438 78.5
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 3.0e-198 695.3 429 80.2
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 3.0e-198 695.3 429 80.2
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 5.2e-198 694.5 435 80.2
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 8.9e-198 693.7 453 77.7
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 1.5e-197 693.0 432 79.6
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 1.5e-197 693.0 434 80.2
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 2.6e-197 692.2 427 79.6
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 4.4e-197 691.4 431 81.2
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 7.5e-197 690.6 436 79.1
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 7.5e-197 690.6 428 80.8
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 1.7e-196 689.5 427 80.3
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 2.8e-196 688.7 429 80.7
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 1.1e-195 686.8 416 81.2
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 1.1e-195 686.8 431 80.5
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 1.8e-195 686.0 441 78.7
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 1.2e-194 683.3 428 79.9
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 4.5e-194 681.4 434 77.6
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 5.9e-194 681.0 430 77.9
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 5.9e-194 681.0 434 77.6
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 7.8e-194 680.6 485 72.2
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 2.3e-193 679.1 432 78.7
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 5.0e-193 677.9 465 75.3
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 6.6e-193 677.6 427 79.2
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 6.6e-193 677.6 429 77.9
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 6.6e-193 677.6 429 77.9
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 8.6e-193 677.2 403 81.1
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 1.9e-192 676.0 430 77.4
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 3.3e-192 675.2 439 77.2
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 3.3e-192 675.2 430 79.1
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 7.3e-192 674.1 438 76.3
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 7.3e-192 674.1 438 75.8
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 7.3e-192 674.1 421 78.4
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 9.5e-192 673.7 437 77.3
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 9.5e-192 673.7 441 77.6
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 1.6e-191 672.9 440 77.0
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 2.8e-191 672.2 427 79.6
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 6.1e-191 671.0 426 79.8
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 1.0e-190 670.2 426 77.7
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 1.8e-190 669.5 443 76.5
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 1.8e-190 669.5 426 79.3
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 1.8e-190 669.5 425 79.1
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 1.8e-190 669.5 431 76.8
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 2.3e-190 669.1 433 77.8
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 8.9e-190 667.2 458 74.9
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 1.2e-189 666.8 429 77.6
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 1.5e-189 666.4 431 77.5
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 2.0e-189 666.0 425 78.4
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 3.4e-189 665.2 429 77.6
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 1.7e-188 662.9 438 77.2
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 8.3e-188 660.6 427 77.3
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 1.4e-187 659.8 423 77.5
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 3.2e-187 658.7 441 76.2
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 4.1e-187 658.3 462 72.5
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 1.6e-186 656.4 555 63.8
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 3.5e-186 655.2 435 76.1
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 1.3e-185 653.3 515 67.0
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 2.3e-185 652.5 436 76.8
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 1.4e-179 633.3 429 75.8
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 1.3e-177 626.7 441 73.7
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 2.3e-177 625.9 415 74.0
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 3.3e-176 622.1 426 73.9
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 1.2e-175 620.2 405 74.3
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 3.6e-175 618.6 399 75.4
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 2.3e-174 615.9 387 76.7
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 5.2e-174 614.8 409 74.6
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 1.5e-173 613.2 424 73.1
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 5.4e-171 604.7 397 76.3
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 7.1e-171 604.4 394 74.9
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 1.2e-170 603.6 380 77.4
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 2.7e-170 602.4 434 70.0
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 4.7e-167 591.7 342 81.9
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 1.5e-165 586.6 362 80.9
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 1.3e-164 583.6 362 79.0
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 2.2e-164 582.8 349 84.0
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 6.4e-156 554.7 346 80.1
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 5.4e-155 551.6 336 80.7
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 1.6e-154 550.1 348 79.9
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 1.7e-153 546.6 384 70.3
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 2.9e-148 529.3 386 68.7
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 1.1e-147 527.3 421 65.3
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 9.3e-147 524.2 361 72.3
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 6.0e-146 521.5 429 63.9
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 4.3e-144 515.4 371 69.0
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 5.3e-142 508.4 344 75.0
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 9.0e-142 507.7 366 70.5
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 3.4e-141 505.8 261 95.4
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 4.0e-134 482.3 270 91.1
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 2.5e-123 446.4 329 66.9
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 2.4e-118 429.9 283 74.2
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 3.8e-116 422.5 238 89.1
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 5.5e-115 418.7 410 55.9
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 3.6e-106 389.4 232 85.8
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 6.5e-92 342.0 194 88.1
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 4.0e-89 332.8 231 71.9
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 1.8e-86 323.9 183 87.4
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 4.7e-82 309.3 365 46.6
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 5.2e-81 305.8 355 50.1
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 8.3e-71 271.9 154 83.8
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 9.8e-64 248.4 221 64.3
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.4e-62 244.6 186 64.0
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.4e-62 244.6 186 64.0
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 1.2e-61 241.5 146 79.5
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.4e-57 228.0 244 57.4
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 1.4e-46 191.4 152 67.1
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 8.1e-42 175.6 99 83.8
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.5e-35 154.1 296 38.5
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 5.3e-33 146.4 220 46.4
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 1.8e-28 131.3 82 78.0
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 2.9e-23 114.0 82 72.0
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 3.5e-21 107.1 60 85.0
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.1e-19 102.1 90 58.9
FAN01G1877 Fragaria x ananassa HOM05D003701 ORTHO05D208017 5.7e-19 99.8 117 52.1
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 1.3e-18 98.6 63 76.2
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 1.3e-18 98.6 63 76.2
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 2.5e-14 84.3 49 77.6
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 3.2e-14 84.0 47 85.1
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 9.3e-14 82.4 46 80.4
C02p38530 Brassica napus HOM05D003701 ORTHO05D101262 9.7e-11 72.4 74 54.1
BolC2t09870H Brassica oleracea HOM05D003701 ORTHO05D041413 2.8e-10 70.9 74 55.4
C05p40290 Brassica napus HOM05D003701 ORTHO05D041413 2.4e-09 67.8 74 54.1
Actinidia38274 Actinidia chinensis HOM05D003701 ORTHO05D012924 6.9e-09 66.2 46 73.9
CBR_g74262 Chara braunii HOM05D003701 ORTHO05D004771 2.2e-07 61.2 40 72.5
MBI09_g06128_MAGBIO Magnolia biondii HOM05D018637 ORTHO05D012924 7.2e-06 56.2 37 70.3
Rhsim05G0028600 Rhododendron simsii HOM05D000745 ORTHO05D000641 7.2e-06 56.2 28 71.4


User provided reference genes

Program Settings