Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G071600 Theobroma cacao HOM05D003657 ORTHO05D004286 1.3e-76 289.7 150 100.0
Thecc.09G304100 Theobroma cacao HOM05D003657 ORTHO05D004286 4.6e-21 105.1 65 81.5
Gohir.D03G117100 Gossypium hirsutum HOM05D003657 ORTHO05D004286 1.3e-20 103.6 95 62.1
Gorai.003G123500 Gossypium raimondii HOM05D003657 ORTHO05D004286 1.3e-20 103.6 95 62.1
Duzib170G0663 Durio zibethinus HOM05D003657 ORTHO05D004286 5.1e-20 101.7 65 78.5
Gohir.A03G050300 Gossypium hirsutum HOM05D003657 ORTHO05D004286 8.7e-20 100.9 95 61.1
Duzib168G2233 Durio zibethinus HOM05D003657 ORTHO05D004286 4.3e-19 98.6 95 60.0
Haze_24275 Corylus avellana HOM05D003657 ORTHO05D004286 8.2e-18 94.4 95 54.7
GSVIVG01024772001 Vitis vinifera HOM05D003657 ORTHO05D004286 8.2e-18 94.4 127 44.9
HanXRQChr08g0229531 Helianthus annuus HOM05D003657 ORTHO05D004286 1.4e-17 93.6 65 72.3
TWI14G1047 Tripterygium wilfordii HOM05D003657 ORTHO05D004286 1.4e-17 93.6 121 45.5
Cfa011669 Carpinus fangiana HOM05D003657 ORTHO05D004286 1.8e-17 93.2 99 55.6
Dinv28627 Davidia involucrata HOM05D003657 ORTHO05D004286 1.8e-17 93.2 65 70.8
FAN25G3712 Fragaria x ananassa HOM05D003657 ORTHO05D004286 1.8e-17 93.2 100 58.0
HanXRQChr17g0562071 Helianthus annuus HOM05D003657 ORTHO05D004286 2.4e-17 92.8 65 70.8
Prupe.6G059500 Prunus persica HOM05D003657 ORTHO05D004286 2.4e-17 92.8 66 71.2
CiPaw.13G079800 Carya illinoinensis HOM05D003657 ORTHO05D004286 5.3e-17 91.7 95 53.7
CiPaw.14G060100 Carya illinoinensis HOM05D003657 ORTHO05D004286 5.3e-17 91.7 95 52.6
QL01p037650 Quercus lobata HOM05D003657 ORTHO05D004286 5.3e-17 91.7 95 55.8
RcHm_v2.0_Chr4g0399271 Rosa chinensis HOM05D003657 ORTHO05D004286 5.3e-17 91.7 130 47.7
CSS0012712 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 6.9e-17 91.3 90 54.4
CSS0013743 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 6.9e-17 91.3 90 54.4
CSS0035662 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 6.9e-17 91.3 90 54.4
FvH4_3g38340 Fragaria vesca HOM05D003657 ORTHO05D004286 6.9e-17 91.3 100 57.0
FAN11G3726 Fragaria x ananassa HOM05D003657 ORTHO05D004286 6.9e-17 91.3 100 57.0
FAN16G1802 Fragaria x ananassa HOM05D003657 ORTHO05D004286 6.9e-17 91.3 100 57.0
Oeu045526.2 Olea europaea HOM05D003657 ORTHO05D004286 9.0e-17 90.9 90 53.3
RcHm_v2.0_Chr2g0157111 Rosa chinensis HOM05D003657 ORTHO05D004286 9.0e-17 90.9 100 57.0
Eucgr.B02268 Eucalyptus grandis HOM05D003657 ORTHO05D004286 1.2e-16 90.5 65 66.2
HanXRQChr14g0433451 Helianthus annuus HOM05D003657 ORTHO05D004286 1.2e-16 90.5 65 69.2
Hma1.2p1_0227F.1_g096420 Hydrangea macrophylla HOM05D003657 ORTHO05D004286 1.2e-16 90.5 65 67.7
CANSAT54G0812 Cannabis sativa HOM05D003657 ORTHO05D004286 1.5e-16 90.1 65 69.2
Hma1.2p1_0863F.1_g229980 Hydrangea macrophylla HOM05D003657 ORTHO05D004286 1.5e-16 90.1 65 69.2
RcHm_v2.0_Chr5g0068951 Rosa chinensis HOM05D003657 ORTHO05D004286 1.5e-16 90.1 130 46.9
THA.LOC104800725 Tarenaya hassleriana HOM05D003657 ORTHO05D004286 1.5e-16 90.1 90 53.3
CSS0030381 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 2.0e-16 89.7 65 67.7
Nitab4.5_0000807g0050 Nicotiana tabacum HOM05D003657 ORTHO05D004286 2.0e-16 89.7 90 52.2
Sabra16G0152200 Salix brachista HOM05D003657 ORTHO05D004286 2.0e-16 89.7 65 70.8
MD03G1072700 Malus domestica HOM05D003657 ORTHO05D004286 2.6e-16 89.4 67 73.1
Nitab4.5_0000170g0210 Nicotiana tabacum HOM05D003657 ORTHO05D004286 2.6e-16 89.4 90 51.1
CSS0010761 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 3.4e-16 89.0 80 57.5
CSS0017673 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 3.4e-16 89.0 67 65.7
CSS0035828 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 3.4e-16 89.0 80 57.5
Cpa.g.sc112.42 Carica papaya HOM05D003657 ORTHO05D004286 3.4e-16 89.0 95 52.6
Lsat_1_v5_gn_9_19501 Lactuca sativa HOM05D003657 ORTHO05D004286 3.4e-16 89.0 65 67.7
MBI15_g31118_MAGBIO Magnolia biondii HOM05D003657 ORTHO05D004286 3.4e-16 89.0 65 64.6
Manes.01G163000 Manihot esculenta HOM05D003657 ORTHO05D004286 3.4e-16 89.0 95 52.6
Cc01_g14050 Coffea canephora HOM05D003657 ORTHO05D004286 5.9e-16 88.2 65 67.7
FAN21G3798 Fragaria x ananassa HOM05D003657 ORTHO05D004286 5.9e-16 88.2 100 56.0
vmacro02979 Vaccinium macrocarpon HOM05D003657 ORTHO05D004286 5.9e-16 88.2 65 64.6
Zm00001eb367100 Zea mays HOM05D003657 ORTHO05D004286 5.9e-16 88.2 99 49.5
SalBow6G0197 Salvia bowleyana HOM05D003657 ORTHO05D004286 7.6e-16 87.8 65 67.7
TWI79G1454 Tripterygium wilfordii HOM05D003657 ORTHO05D004286 7.6e-16 87.8 90 52.2
MD11G1078800 Malus domestica HOM05D003657 ORTHO05D004286 1.0e-15 87.4 120 49.2
DCAR_018959 Daucus carota HOM05D003657 ORTHO05D004286 1.3e-15 87.0 65 61.5
Nn2g13661 Nelumbo nucifera HOM05D003657 ORTHO05D004286 1.3e-15 87.0 65 64.6
PGR102G3249 Punica granatum HOM05D003657 ORTHO05D004286 1.3e-15 87.0 65 61.5
Rhsim01G0235900 Rhododendron simsii HOM05D003657 ORTHO05D004286 1.3e-15 87.0 90 52.2
Actinidia23893 Actinidia chinensis HOM05D003657 ORTHO05D004286 1.7e-15 86.7 95 50.5
Aqoxy2G02701 Aquilegia oxysepala HOM05D003657 ORTHO05D004286 2.9e-15 85.9 96 46.9
Aqoxy4G02626 Aquilegia oxysepala HOM05D003657 ORTHO05D004286 2.9e-15 85.9 96 46.9
Ciclev10030030m.g Citrus clementina HOM05D003657 ORTHO05D004286 2.9e-15 85.9 66 62.1
Actinidia34451 Actinidia chinensis HOM05D003657 ORTHO05D004286 3.8e-15 85.5 95 49.5
CsaV3_6G016310 Cucumis sativus L. HOM05D003657 ORTHO05D004286 3.8e-15 85.5 65 66.2
Nitab4.5_0000010g0240 Nicotiana tabacum HOM05D003657 ORTHO05D004286 3.8e-15 85.5 90 50.0
Nitab4.5_0005502g0010 Nicotiana tabacum HOM05D003657 ORTHO05D004286 3.8e-15 85.5 90 50.0
Sed0018588 Sechium edule HOM05D003657 ORTHO05D004286 3.8e-15 85.5 65 66.2
PGSC0003DMG400030351 Solanum tuberosum HOM05D003657 ORTHO05D004286 3.8e-15 85.5 90 51.1
arahy.Tifrunner.gnm1.ann1.NA7AU5 Arachis hypogaea HOM05D003657 ORTHO05D004286 5.0e-15 85.1 90 53.3
Peaxi162Scf00540g00620 Petunia axillaris HOM05D003657 ORTHO05D004286 5.0e-15 85.1 90 48.9
SGA_v2.0_scaffold28G11769 Striga asiatica HOM05D003657 ORTHO05D004286 5.0e-15 85.1 65 64.6
Ca_14923_v3 Cicer arietinum L. HOM05D003657 ORTHO05D004286 6.5e-15 84.7 65 64.6
MELO3C025862.2 Cucumis melo HOM05D003657 ORTHO05D004286 6.5e-15 84.7 65 66.2
Zm00001eb147490 Zea mays HOM05D003657 ORTHO05D004286 6.5e-15 84.7 117 41.9
arahy.Tifrunner.gnm1.ann1.XTS0HX Arachis hypogaea HOM05D003657 ORTHO05D004286 8.5e-15 84.3 64 67.2
Lj6g0007931 Lotus japonicus HOM05D003657 ORTHO05D004286 8.5e-15 84.3 64 65.6
ClCG02G019640 Citrullus lanatus HOM05D003657 ORTHO05D004286 1.1e-14 84.0 65 64.6
Hma1.2p1_3301F.1_g335025 Hydrangea macrophylla HOM05D003657 ORTHO05D004286 1.1e-14 84.0 65 64.6
Os01g0856000 Oryza sativa ssp. japonica HOM05D003657 ORTHO05D004286 1.1e-14 84.0 99 47.5
TPR.G21184 Trifolium pratense HOM05D003657 ORTHO05D004286 1.1e-14 84.0 90 52.2
vmacro14588 Vaccinium macrocarpon HOM05D003657 ORTHO05D004286 1.1e-14 84.0 65 64.6
Medtr3g463490 Medicago truncatula HOM05D003657 ORTHO05D004286 1.9e-14 83.2 64 64.1
arahy.Tifrunner.gnm1.ann1.RGQY4W Arachis hypogaea HOM05D003657 ORTHO05D004286 2.5e-14 82.8 101 47.5
THA.LOC104816080 Tarenaya hassleriana HOM05D003657 ORTHO05D004286 2.5e-14 82.8 65 61.5
Lalb_Chr17g0345031 Lupinus albus HOM05D003657 ORTHO05D004286 3.2e-14 82.4 64 67.2
unitig_0.g1519 Utricularia gibba HOM05D003657 ORTHO05D004286 3.2e-14 82.4 62 61.3
Migut.G00378 Erythranthe guttata HOM05D003657 ORTHO05D004286 4.2e-14 82.0 96 47.9
Migut.I00319 Erythranthe guttata HOM05D003657 ORTHO05D004286 4.2e-14 82.0 96 47.9
Glyma.08G333800 Glycine max HOM05D003657 ORTHO05D004286 4.2e-14 82.0 64 62.5
Glyma.18G066900 Glycine max HOM05D003657 ORTHO05D004286 4.2e-14 82.0 120 41.7
Solyc06g076860.4 Solanum lycopersicum HOM05D003657 ORTHO05D004286 4.2e-14 82.0 90 48.9
Sopen06g033250 Solanum pennellii HOM05D003657 ORTHO05D004286 4.2e-14 82.0 90 48.9
CARHR123010 Cardamine hirsuta HOM05D003657 ORTHO05D004286 5.5e-14 81.6 90 48.9
PSO339G1362 Papaver somniferum HOM05D003657 ORTHO05D004286 7.2e-14 81.3 65 61.5
PSO384G3334 Papaver somniferum HOM05D003657 ORTHO05D004286 7.2e-14 81.3 65 61.5
vmacro19103 Vaccinium macrocarpon HOM05D003657 ORTHO05D004286 7.2e-14 81.3 62 61.3
ATR0618G109 Amborella trichopoda HOM05D003657 ORTHO05D004286 9.3e-14 80.9 158 38.6
Carub.0004s1078 Capsella rubella HOM05D003657 ORTHO05D004286 9.3e-14 80.9 90 47.8
Lalb_Chr04g0252271 Lupinus albus HOM05D003657 ORTHO05D004286 9.3e-14 80.9 66 62.1
AT2G29680 Arabidopsis thaliana HOM05D003657 ORTHO05D004286 1.2e-13 80.5 114 44.7
Carub.0001s0657 Capsella rubella HOM05D003657 ORTHO05D004286 1.2e-13 80.5 90 50.0
VMungo0540G2171 Vigna mungo HOM05D003657 ORTHO05D004286 1.2e-13 80.5 70 58.6
Aa31LG5G550 Aethionema arabicum HOM05D003657 ORTHO05D004286 1.6e-13 80.1 95 45.3
AL4G24450 Arabidopsis lyrata HOM05D003657 ORTHO05D004286 2.1e-13 79.7 114 43.0
AT1G07270 Arabidopsis thaliana HOM05D003657 ORTHO05D004286 2.7e-13 79.3 90 46.7
CAN.G394.117 Capsicum annuum HOM05D003657 ORTHO05D004286 2.7e-13 79.3 90 45.6
HPP92_015512 Vanilla planifolia HOM05D003657 ORTHO05D004286 3.6e-13 79.0 90 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2818 Anthoceros agrestis HOM05D003657 ORTHO05D004286 4.6e-13 78.6 65 58.5
BcaC02g11054 Brassica carinata HOM05D003657 ORTHO05D004286 6.1e-13 78.2 90 47.8
C04p21110 Brassica napus HOM05D003657 ORTHO05D004286 6.1e-13 78.2 90 47.8
Sp4g12400 Schrenkiella parvula HOM05D003657 ORTHO05D004286 6.1e-13 78.2 114 41.2
Aa31LG5G6800 Aethionema arabicum HOM05D003657 ORTHO05D004286 7.9e-13 77.8 90 46.7
BcaB01g03143 Brassica carinata HOM05D002033 ORTHO05D002181 7.9e-13 77.8 90 46.7
Thhalv10016540m.g Eutrema salsugineum HOM05D003657 ORTHO05D004286 1.0e-12 77.4 120 40.8
Nn4g24153 Nelumbo nucifera HOM05D003657 ORTHO05D004286 1.4e-12 77.0 65 63.1
AL1G17420 Arabidopsis lyrata HOM05D003657 ORTHO05D004286 1.8e-12 76.6 90 45.6
BcaC01g05004 Brassica carinata HOM05D002033 ORTHO05D002181 1.8e-12 76.6 114 41.2
A03p26150 Brassica napus HOM05D002033 ORTHO05D002181 1.8e-12 76.6 114 41.2
C03p31210 Brassica napus HOM05D002033 ORTHO05D002181 1.8e-12 76.6 114 41.2
BolC3t15469H Brassica oleracea HOM05D003657 ORTHO05D004286 1.8e-12 76.6 114 41.2
BraA03t11830Z Brassica rapa HOM05D002033 ORTHO05D002181 1.8e-12 76.6 114 41.2
HanXRQChr17g0551341 Helianthus annuus HOM05D003657 ORTHO05D004286 1.8e-12 76.6 65 63.1
CARHR006990 Cardamine hirsuta HOM05D003657 ORTHO05D004286 2.3e-12 76.3 90 45.6
Phvul.006G064300 Phaseolus vulgaris HOM05D003657 ORTHO05D004286 2.3e-12 76.3 64 59.4
A10p05840 Brassica napus HOM05D003657 ORTHO05D004286 3.0e-12 75.9 65 55.4
BraA10t42845Z Brassica rapa HOM05D003657 ORTHO05D004286 3.0e-12 75.9 65 55.4
Pp3c2_14050 Physcomitrium patens HOM05D003657 ORTHO05D004286 3.0e-12 75.9 65 55.4
SEGI_02229 Sequoiadendron giganteum HOM05D003657 ORTHO05D004286 3.9e-12 75.5 65 56.9
SEGI_38514 Sequoiadendron giganteum HOM05D003657 ORTHO05D004286 6.7e-12 74.7 65 55.4
ECA247G3640 Erigeron canadensis HOM05D003657 ORTHO05D004286 1.9e-11 73.2 53 67.9
Ah.08g221030 Amaranthus hybridus HOM05D003657 ORTHO05D004286 2.2e-10 69.7 62 58.1
Sc12g0000820 Simmondsia chinensis HOM05D003657 ORTHO05D004286 2.8e-10 69.3 90 41.1
EL10Ac7g16143 Beta vulgaris HOM05D003657 ORTHO05D004286 6.3e-10 68.2 65 56.9
CBR_g34218 Chara braunii HOM05D003657 ORTHO05D004286 9.1e-09 64.3 65 47.7
CBR_g22272 Chara braunii HOM05D003657 ORTHO05D004286 1.2e-08 63.9 65 47.7
AUR62020110 Chenopodium quinoa HOM05D003657 ORTHO05D004286 1.2e-08 63.9 62 53.2
SHI00483 Sapria himalayana HOM05D003657 ORTHO05D004286 1.5e-08 63.5 91 40.7
AUR62001671 Chenopodium quinoa HOM05D003657 ORTHO05D004286 2.0e-08 63.2 62 53.2
Hund04875 Selenicereus undatus HOM05D003657 ORTHO05D004286 3.4e-08 62.4 62 54.8
CSS0044418 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 1.7e-07 60.1 84 44.0
SMO137G0247 Selaginella moellendorffii HOM05D003657 ORTHO05D004286 5.0e-07 58.5 64 43.8
COL.COLO4_19124 Corchorus olitorius HOM05D003657 ORTHO05D004286 1.4e-06 57.0 38 71.1
Mapoly0042s0007 Marchantia polymorpha HOM05D003657 ORTHO05D004286 1.4e-06 57.0 65 46.2
Potri.001G250200 Populus trichocarpa HOM05D003657 ORTHO05D004286 9.4e-06 54.3 37 67.6


User provided reference genes

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