Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 1.5e-167 592.8 304 100.0
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 7.1e-154 547.4 305 91.5
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 4.5e-148 528.1 305 87.5
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.0e-147 526.9 305 86.9
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.0e-147 526.9 305 86.9
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.2e-147 525.8 305 87.2
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 5.0e-147 524.6 305 86.9
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.2e-145 520.0 305 85.6
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 3.1e-141 505.4 309 80.9
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 6.9e-141 504.2 386 70.5
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 1.1e-138 496.9 309 79.6
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 1.9e-138 496.1 303 79.2
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 2.5e-138 495.7 308 80.8
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 2.7e-137 492.3 304 78.6
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 4.7e-137 491.5 309 78.0
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 1.0e-136 490.3 309 78.6
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 1.4e-136 490.0 305 77.7
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 1.8e-136 489.6 308 76.6
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 3.0e-136 488.8 303 78.9
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 5.1e-136 488.0 271 91.1
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 5.1e-136 488.0 309 77.7
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 6.7e-136 487.6 309 77.7
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 8.8e-136 487.3 309 78.0
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 1.1e-135 486.9 303 78.2
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 1.5e-135 486.5 309 77.7
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 2.6e-135 485.7 304 78.9
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 6.3e-134 481.1 304 77.3
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 9.1e-133 477.2 306 80.1
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 9.1e-133 477.2 298 75.8
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 2.0e-132 476.1 298 75.5
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 2.6e-132 475.7 307 77.5
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 4.5e-132 474.9 304 76.3
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 7.7e-132 474.2 308 78.2
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 1.7e-131 473.0 298 77.9
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 1.7e-131 473.0 304 76.3
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 2.9e-131 472.2 295 76.6
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 3.8e-131 471.9 305 75.7
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 6.5e-131 471.1 309 74.1
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 6.5e-131 471.1 305 74.8
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 6.5e-131 471.1 306 79.7
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 8.5e-131 470.7 307 74.3
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 3.2e-130 468.8 297 77.1
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 1.2e-129 466.8 312 73.4
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 6.1e-129 464.5 304 76.0
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 5.2e-128 461.5 306 74.5
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 5.2e-128 461.5 309 76.4
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 5.2e-128 461.5 344 69.8
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 6.7e-128 461.1 298 76.5
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 1.1e-127 460.3 305 71.8
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 5.7e-127 458.0 299 74.2
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 7.4e-127 457.6 306 73.2
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 9.7e-127 457.2 306 73.5
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 9.7e-127 457.2 306 73.9
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 1.7e-126 456.4 298 74.8
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 1.7e-126 456.4 299 71.6
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 1.7e-126 456.4 305 73.1
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 3.7e-126 455.3 299 72.2
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 6.3e-126 454.5 305 74.1
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 6.3e-126 454.5 309 72.5
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 6.3e-126 454.5 304 73.4
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 1.1e-125 453.8 304 74.0
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.4e-125 453.4 301 72.8
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 1.8e-125 453.0 299 72.2
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 2.4e-125 452.6 301 74.8
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 3.1e-125 452.2 305 72.8
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 4.1e-125 451.8 305 72.1
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 5.3e-125 451.4 305 72.8
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 7.0e-125 451.1 305 72.8
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 7.0e-125 451.1 299 73.6
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 7.0e-125 451.1 300 72.0
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 9.1e-125 450.7 305 72.8
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 9.1e-125 450.7 305 73.4
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 1.2e-124 450.3 297 71.7
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 1.6e-124 449.9 299 70.6
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 2.0e-124 449.5 313 72.2
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 3.5e-124 448.7 304 73.7
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 3.5e-124 448.7 297 74.1
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 7.7e-124 447.6 301 73.4
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 7.7e-124 447.6 305 71.5
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 7.7e-124 447.6 312 71.2
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 1.3e-123 446.8 301 72.8
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 2.2e-123 446.0 301 71.8
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 2.2e-123 446.0 304 70.1
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 2.2e-123 446.0 311 72.0
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 3.8e-123 445.3 298 72.5
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 8.5e-123 444.1 340 70.0
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 1.5e-122 443.4 304 73.4
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 1.5e-122 443.4 309 71.5
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 1.9e-122 443.0 310 71.6
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.9e-122 443.0 300 72.7
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 1.9e-122 443.0 293 74.4
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 4.2e-122 441.8 305 71.8
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 7.2e-122 441.0 302 72.2
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 7.2e-122 441.0 274 78.1
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 2.1e-121 439.5 304 69.7
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 1.0e-120 437.2 348 62.6
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 1.4e-120 436.8 296 72.6
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 2.3e-120 436.0 296 72.3
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 3.0e-120 435.6 299 69.9
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 8.8e-120 434.1 346 64.5
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 1.5e-119 433.3 305 71.1
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 2.0e-119 433.0 296 69.9
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 4.4e-119 431.8 304 71.4
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 1.7e-118 429.9 296 69.9
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 4.8e-118 428.3 303 69.6
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 1.4e-117 426.8 304 68.8
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 1.8e-117 426.4 288 70.8
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 2.4e-117 426.0 259 78.8
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 3.1e-117 425.6 274 76.3
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 9.1e-117 424.1 289 70.6
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 1.6e-116 423.3 302 70.5
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 3.5e-116 422.2 301 68.1
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 7.7e-116 421.0 342 61.7
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.7e-115 419.9 257 78.2
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 2.2e-115 419.5 307 66.1
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 1.5e-114 416.8 265 73.6
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 5.5e-114 414.8 302 69.2
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 7.2e-114 414.5 294 66.7
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 5.2e-112 408.3 270 71.1
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 7.5e-111 404.4 309 63.4
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 7.7e-108 394.4 298 66.1
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 1.3e-107 393.7 301 66.1
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 2.9e-107 392.5 299 64.5
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 3.3e-106 389.0 307 63.2
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 8.0e-105 384.4 303 59.7
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 8.9e-104 380.9 302 63.2
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.4e-101 373.6 287 64.1
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 4.5e-100 368.6 224 77.2
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.9e-98 363.2 230 80.4
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 2.4e-93 346.3 268 61.2
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 1.2e-89 334.0 287 55.7
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.9e-85 320.1 302 52.0
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 1.9e-85 320.1 263 60.8
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 3.0e-83 312.8 280 53.2
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 3.0e-83 312.8 277 56.0
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 3.0e-83 312.8 305 50.8
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 1.8e-80 303.5 280 53.6
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 3.1e-80 302.8 301 51.5
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 4.0e-80 302.4 280 53.2
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 4.1e-77 292.4 275 52.4
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 1.2e-76 290.8 279 53.4
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 1.6e-76 290.4 289 55.0
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 1.6e-73 280.4 248 56.5
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 1.8e-72 276.9 203 67.5
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 7.1e-69 265.0 236 55.9
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 2.1e-68 263.5 325 49.8
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 1.6e-65 253.8 195 66.7
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 2.2e-62 243.4 214 60.7
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 1.9e-61 240.4 221 53.8
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 1.6e-60 237.3 181 64.6
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 2.5e-58 229.9 148 73.6
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 8.1e-57 224.9 219 52.5
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 1.8e-56 223.8 150 72.0
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 3.1e-56 223.0 184 62.0
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 3.1e-48 196.4 281 40.2
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.3e-46 191.0 151 60.9
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 5.5e-37 159.1 282 34.0
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 1.0e-30 138.3 105 66.7
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 1.3e-30 137.9 312 28.2
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 4.3e-26 122.9 224 33.5
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 7.4e-26 122.1 76 80.3
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 2.4e-24 117.1 114 52.6
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 3.1e-24 116.7 290 29.3
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 5.3e-24 115.9 131 53.4
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 8.5e-22 108.6 284 31.7
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.9e-13 80.9 184 35.9
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 1.4e-11 74.7 58 55.2
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 7.0e-08 62.4 45 62.2
FvH4_7g19410 Fragaria vesca HOM05D001952 ORTHO05D005047 8.5e-06 55.5 39 64.1


User provided reference genes

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