Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G069600 Theobroma cacao HOM05D010162 ORTHO05D010383 1.7e-134 482.6 239 100.0
Duzib128G1476 Durio zibethinus HOM05D010162 ORTHO05D010383 4.9e-81 305.1 218 73.4
Duzib114G0652 Durio zibethinus HOM05D010162 ORTHO05D010383 1.8e-72 276.6 226 70.8
COL.COLO4_23723 Corchorus olitorius HOM05D010162 ORTHO05D010383 5.8e-66 255.0 231 65.4
Gorai.013G026600 Gossypium raimondii HOM05D010162 ORTHO05D010383 7.8e-63 244.6 229 62.4
Gohir.A13G024800 Gossypium hirsutum HOM05D010162 ORTHO05D010383 5.0e-62 241.9 226 62.4
Gohir.A13G024900 Gossypium hirsutum HOM05D010162 ORTHO05D010383 2.8e-60 236.1 227 62.1
Gorai.002G143100 Gossypium raimondii HOM05D010162 ORTHO05D010383 4.4e-58 228.8 227 61.7
Gohir.D01G117600 Gossypium hirsutum HOM05D010162 ORTHO05D010383 7.5e-58 228.0 227 61.7
Gohir.D13G023650 Gossypium hirsutum HOM05D010162 ORTHO05D010383 7.5e-58 228.0 226 59.7
Gorai.013G026500 Gossypium raimondii HOM05D010162 ORTHO05D010383 1.9e-56 223.4 228 58.3
Gohir.D13G023750 Gossypium hirsutum HOM05D010162 ORTHO05D010383 4.3e-53 212.2 228 57.0
Gohir.D13G023725 Gossypium hirsutum HOM05D010162 ORTHO05D010383 1.2e-52 210.7 228 56.6
Gorai.013G026700 Gossypium raimondii HOM05D010162 ORTHO05D010383 1.4e-51 207.2 228 56.1
Gohir.A13G024950 Gossypium hirsutum HOM05D010162 ORTHO05D010383 2.4e-51 206.5 226 57.1
Gohir.D13G023700 Gossypium hirsutum HOM05D010162 ORTHO05D010383 7.1e-48 194.9 229 53.7
CiPaw.01G275300 Carya illinoinensis HOM05D010935 ORTHO05D010383 3.0e-30 136.3 223 43.5
Prupe.2G217100 Prunus persica HOM05D010935 ORTHO05D010383 1.3e-25 120.9 220 40.5
MD07G1177700 Malus domestica HOM05D010935 ORTHO05D010383 2.2e-25 120.2 216 40.3
MD01G1111500 Malus domestica HOM05D010935 ORTHO05D010383 2.9e-25 119.8 214 40.7
Dinv11796 Davidia involucrata HOM05D000336 ORTHO05D002705 1.1e-24 117.9 238 39.5
Eucgr.G02810 Eucalyptus grandis HOM05D010935 ORTHO05D010383 7.1e-24 115.2 215 38.1
QL08p056651 Quercus lobata HOM05D000336 ORTHO05D002705 2.3e-22 110.2 224 37.5
TAR383G0288 Trochodendron aralioides HOM05D003020 ORTHO05D003226 1.1e-21 107.8 217 38.7
Prupe.2G217000 Prunus persica HOM05D010935 ORTHO05D010383 1.9e-21 107.1 218 41.3
MD07G1177600 Malus domestica HOM05D010935 ORTHO05D010383 5.6e-21 105.5 229 39.3
TAR625G0330 Trochodendron aralioides HOM05D003020 ORTHO05D003226 9.6e-21 104.8 258 35.3
TAR626G0085 Trochodendron aralioides HOM05D003020 ORTHO05D003226 9.6e-21 104.8 251 33.5
TAR383G0860 Trochodendron aralioides HOM05D003020 ORTHO05D003226 2.1e-20 103.6 265 33.6
Manes.10G043900 Manihot esculenta HOM05D010162 ORTHO05D010383 6.2e-20 102.1 210 41.4
Potri.008G042900 Populus trichocarpa HOM05D010162 ORTHO05D010383 1.8e-19 100.5 217 37.3
Manes.10G044000 Manihot esculenta HOM05D010162 ORTHO05D010383 2.4e-19 100.1 207 41.1
TAR626G1849 Trochodendron aralioides HOM05D003020 ORTHO05D003226 6.9e-19 98.6 252 32.1
FAN06G0306 Fragaria x ananassa HOM05D010935 ORTHO05D010383 9.0e-19 98.2 210 38.1
FAN03G3034 Fragaria x ananassa HOM05D010935 ORTHO05D010383 1.2e-18 97.8 210 38.1
Cfa001603 Carpinus fangiana HOM05D010935 ORTHO05D010383 1.5e-18 97.4 206 38.3
FvH4_7g20010 Fragaria vesca HOM05D010935 ORTHO05D010383 1.5e-18 97.4 215 37.7
FAN10G0666 Fragaria x ananassa HOM05D010935 ORTHO05D010383 1.5e-18 97.4 211 38.4
TAR383G0645 Trochodendron aralioides HOM05D003020 ORTHO05D003226 7.6e-18 95.1 250 33.2
RcHm_v2.0_Chr1g0363951 Rosa chinensis HOM05D010935 ORTHO05D010383 1.0e-17 94.7 227 37.9
Manes.10G044100 Manihot esculenta HOM05D010162 ORTHO05D010383 1.3e-17 94.4 207 38.6
RcHm_v2.0_Chr1g0363961 Rosa chinensis HOM05D010935 ORTHO05D010383 1.3e-17 94.4 218 37.2
FAN01G2770 Fragaria x ananassa HOM05D010935 ORTHO05D010383 6.5e-17 92.0 222 39.2
FvH4_7g20000 Fragaria vesca HOM05D010935 ORTHO05D010383 1.9e-16 90.5 223 39.0
FAN03G0405 Fragaria x ananassa HOM05D010935 ORTHO05D010383 1.9e-16 90.5 223 39.0
Actinidia04141 Actinidia chinensis HOM05D003020 ORTHO05D003226 2.5e-16 90.1 249 33.7
Manes.10G043800 Manihot esculenta HOM05D010162 ORTHO05D010383 2.5e-16 90.1 208 35.6
TAR383G0698 Trochodendron aralioides HOM05D003020 ORTHO05D003226 2.5e-16 90.1 266 33.8
Haze_22098 Corylus avellana HOM05D003020 ORTHO05D003226 9.3e-16 88.2 261 31.0
Nitab4.5_0021955g0010 Nicotiana tabacum HOM05D011460 ORTHO05D010383 1.6e-15 87.4 219 35.2
Cfa013505 Carpinus fangiana HOM05D003020 ORTHO05D003226 2.7e-15 86.7 249 33.7
ClCG09G020520 Citrullus lanatus HOM05D040659 ORTHO05D010383 6.0e-15 85.5 221 32.6
Nitab4.5_0005460g0040 Nicotiana tabacum HOM05D011460 ORTHO05D010383 6.0e-15 85.5 218 34.4
Cpa.g.sc53.28 Carica papaya HOM05D003020 ORTHO05D003226 1.3e-14 84.3 258 31.4
Dinv11798 Davidia involucrata HOM05D003020 ORTHO05D003226 3.0e-14 83.2 240 32.1
Potri.010G219300 Populus trichocarpa HOM05D010162 ORTHO05D010383 5.1e-14 82.4 141 45.4
Hma1.2p1_2080F.1_g313480 Hydrangea macrophylla HOM05D011460 ORTHO05D010383 6.7e-14 82.0 233 32.6
TAR636G2901 Trochodendron aralioides HOM05D003020 ORTHO05D003226 2.5e-13 80.1 272 30.5
Oeu025224.1 Olea europaea HOM05D003020 ORTHO05D003226 3.3e-13 79.7 217 33.2
Atru.chr12.703 Acer truncatum HOM05D043902 ORTHO05D010383 2.2e-12 77.0 179 36.3
Atru.chr12.713 Acer truncatum HOM05D043902 ORTHO05D010383 3.7e-12 76.3 179 35.8
Duzib170G0355 Durio zibethinus HOM05D003020 ORTHO05D003226 3.7e-12 76.3 238 31.5
Oeu042166.1 Olea europaea HOM05D003020 ORTHO05D003226 6.3e-12 75.5 261 32.2
Thecc.09G173200 Theobroma cacao HOM05D003020 ORTHO05D003226 6.3e-12 75.5 235 29.8
Dinv41250 Davidia involucrata HOM05D003020 ORTHO05D003226 8.2e-12 75.1 250 30.0
Nn2g12774 Nelumbo nucifera HOM05D003020 ORTHO05D003226 8.2e-12 75.1 247 32.8
Aqoxy7G03070 Aquilegia oxysepala HOM05D003020 ORTHO05D003226 1.1e-11 74.7 271 30.3
TWI63G1498 Tripterygium wilfordii HOM05D003020 ORTHO05D003226 1.8e-11 73.9 238 30.7
FAN10G0626 Fragaria x ananassa HOM05D003020 ORTHO05D003226 2.4e-11 73.6 264 29.5
Lsat_1_v5_gn_2_113841 Lactuca sativa HOM05D011460 ORTHO05D010383 2.4e-11 73.6 225 33.3
Sabra08G0029900 Salix brachista HOM05D003020 ORTHO05D003226 2.4e-11 73.6 245 31.0
Hma1.2p1_1025F.1_g249270 Hydrangea macrophylla HOM05D003020 ORTHO05D003226 3.1e-11 73.2 269 30.9
FvH4_7g20070 Fragaria vesca HOM05D003020 ORTHO05D003226 4.1e-11 72.8 264 29.2
FAN06G0496 Fragaria x ananassa HOM05D003020 ORTHO05D003226 4.1e-11 72.8 264 29.5
Gohir.D08G094000 Gossypium hirsutum HOM05D003020 ORTHO05D003226 4.1e-11 72.8 244 29.5
COL.COLO4_35897 Corchorus olitorius HOM05D003020 ORTHO05D003226 5.3e-11 72.4 238 33.2
Duzib168G2116 Durio zibethinus HOM05D003020 ORTHO05D003226 5.3e-11 72.4 235 27.7
Gohir.A08G084400 Gossypium hirsutum HOM05D003020 ORTHO05D003226 6.9e-11 72.0 244 30.3
Manes.10G043400 Manihot esculenta HOM05D010935 ORTHO05D010383 6.9e-11 72.0 213 32.4
MELO3C002880.2 Cucumis melo HOM05D040659 ORTHO05D010383 1.2e-10 71.2 208 30.3
SalBow6G2220 Salvia bowleyana HOM05D003020 ORTHO05D003226 1.2e-10 71.2 247 30.8
Manes.10G043600 Manihot esculenta HOM05D003020 ORTHO05D003226 1.5e-10 70.9 244 31.6
Oeu026427.1 Olea europaea HOM05D011460 ORTHO05D010383 3.4e-10 69.7 247 29.1
Ciclev10033556m.g Citrus clementina HOM05D010162 ORTHO05D010383 5.9e-10 68.9 242 28.9
Haze_16927 Corylus avellana HOM05D003020 ORTHO05D003226 5.9e-10 68.9 244 32.0
Potri.008G043300 Populus trichocarpa HOM05D003020 ORTHO05D003226 5.9e-10 68.9 243 30.9
Prupe.2G217400 Prunus persica HOM05D003020 ORTHO05D003226 5.9e-10 68.9 262 27.9
Gorai.004G031500 Gossypium raimondii HOM05D003020 ORTHO05D003226 7.7e-10 68.6 226 32.3
Dinv42724 Davidia involucrata HOM05D003020 ORTHO05D003226 1.0e-09 68.2 236 29.7
Dinv43377 Davidia involucrata HOM05D003020 ORTHO05D003226 1.0e-09 68.2 236 29.7
Manes.14G153300 Manihot esculenta HOM05D003020 ORTHO05D003226 1.0e-09 68.2 240 29.6
FAN03G1700 Fragaria x ananassa HOM05D003020 ORTHO05D003226 1.3e-09 67.8 264 28.8
PSO170G3450 Papaver somniferum HOM05D003020 ORTHO05D003226 1.7e-09 67.4 279 27.6
Phvul.005G045200 Phaseolus vulgaris HOM05D009308 ORTHO05D011513 1.7e-09 67.4 176 31.2
Cpa.g.sc95.49 Carica papaya HOM05D003020 ORTHO05D003226 2.2e-09 67.0 258 30.2
QL02p097728 Quercus lobata HOM05D003020 ORTHO05D003226 2.2e-09 67.0 280 30.0
Peaxi162Scf00254g00044 Petunia axillaris HOM05D011460 ORTHO05D010383 2.9e-09 66.6 221 30.8
RcHm_v2.0_Chr1g0364021 Rosa chinensis HOM05D003020 ORTHO05D003226 2.9e-09 66.6 267 27.7
CsaV3_5G025880 Cucumis sativus L. HOM05D040659 ORTHO05D010383 3.8e-09 66.2 225 29.8
Peaxi162Scf00851g00012 Petunia axillaris HOM05D012114 ORTHO05D014153 3.8e-09 66.2 229 31.0
FAN22G0428 Fragaria x ananassa HOM05D003020 ORTHO05D003226 5.0e-09 65.9 262 27.9
Hma1.2p1_0453F.1_g156030 Hydrangea macrophylla HOM05D003020 ORTHO05D003226 5.0e-09 65.9 211 30.8
FAN06G2629 Fragaria x ananassa HOM05D010935 ORTHO05D010383 8.5e-09 65.1 209 36.4
PGSC0003DMG400016243 Solanum tuberosum HOM05D011460 ORTHO05D010383 8.5e-09 65.1 184 31.5
VMungo1080G0761 Vigna mungo HOM05D009308 ORTHO05D011513 8.5e-09 65.1 173 34.1
FAN17G2997 Fragaria x ananassa HOM05D003020 ORTHO05D003226 1.1e-08 64.7 262 28.6
Lalb_Chr12g0199391 Lupinus albus HOM05D003020 ORTHO05D003226 1.1e-08 64.7 231 30.3
Duzib150G1089 Durio zibethinus HOM05D003020 ORTHO05D003226 1.4e-08 64.3 233 30.9
FAN07G1960 Fragaria x ananassa HOM05D003020 ORTHO05D003226 1.4e-08 64.3 262 27.5
Gohir.A08G023400 Gossypium hirsutum HOM05D003020 ORTHO05D003226 1.4e-08 64.3 239 30.1
Manes.07G102900 Manihot esculenta HOM05D003020 ORTHO05D003226 1.4e-08 64.3 243 28.4
CiPaw.07G071600 Carya illinoinensis HOM05D003020 ORTHO05D003226 1.9e-08 63.9 255 29.8
FvH4_4g08220 Fragaria vesca HOM05D003020 ORTHO05D003226 1.9e-08 63.9 260 28.1
FAN12G0399 Fragaria x ananassa HOM05D003020 ORTHO05D003226 1.9e-08 63.9 260 28.5
Lj1C921T2 Lonicera japonica HOM05D003020 ORTHO05D003226 1.9e-08 63.9 228 30.3
TWI34G0269 Tripterygium wilfordii HOM05D003020 ORTHO05D003226 1.9e-08 63.9 228 28.5
Glyma.17G063300 Glycine max HOM05D003020 ORTHO05D003226 2.5e-08 63.5 232 31.5
HanXRQChr08g0219501 Helianthus annuus HOM05D003020 ORTHO05D003226 2.5e-08 63.5 236 31.8
VMungo1215G0012 Vigna mungo HOM05D003020 ORTHO05D003226 4.2e-08 62.8 233 30.9
Ca_21174_v3 Cicer arietinum L. HOM05D003020 ORTHO05D003226 5.5e-08 62.4 259 29.0
Ca_21223_v3 Cicer arietinum L. HOM05D003020 ORTHO05D003226 5.5e-08 62.4 259 29.0
Actinidia07721 Actinidia chinensis HOM05D003020 ORTHO05D003226 7.2e-08 62.0 234 32.9
Lsat_1_v5_gn_5_84881 Lactuca sativa HOM05D003020 ORTHO05D003226 7.2e-08 62.0 238 29.8
Nitab4.5_0000233g0300 Nicotiana tabacum HOM05D012114 ORTHO05D014153 7.2e-08 62.0 236 29.7
Oeu004196.1 Olea europaea HOM05D003020 ORTHO05D003226 7.2e-08 62.0 241 27.4
Dinv31354 Davidia involucrata HOM05D003020 ORTHO05D003226 9.4e-08 61.6 216 31.5
Phvul.007G092400 Phaseolus vulgaris HOM05D003020 ORTHO05D003226 9.4e-08 61.6 235 31.5
Eucgr.C00156 Eucalyptus grandis HOM05D003020 ORTHO05D003226 1.2e-07 61.2 242 28.9
Lj2g0020728 Lotus japonicus HOM05D009308 ORTHO05D011513 1.2e-07 61.2 183 32.2
MD13G1253900 Malus domestica HOM05D003020 ORTHO05D003226 1.2e-07 61.2 261 27.6
MSTRG.27468 Avicennia marina HOM05D011460 ORTHO05D010383 1.6e-07 60.8 269 27.9
Manes.14G153500 Manihot esculenta HOM05D003020 ORTHO05D003226 1.6e-07 60.8 240 28.8
CANSAT11G1249 Cannabis sativa HOM05D003020 ORTHO05D003226 2.1e-07 60.5 295 25.1
Ciclev10010819m.g Citrus clementina HOM05D003020 ORTHO05D003226 2.1e-07 60.5 275 26.9
ECA240G3460 Erigeron canadensis HOM05D003020 ORTHO05D003226 2.1e-07 60.5 249 28.1
Lj1P920T18 Lonicera japonica HOM05D003020 ORTHO05D003226 2.1e-07 60.5 189 30.2
Potri.018G092800 Populus trichocarpa HOM05D003020 ORTHO05D003226 2.1e-07 60.5 246 32.1
CiPaw.08G036400 Carya illinoinensis HOM05D003020 ORTHO05D003226 2.7e-07 60.1 234 30.8
Gohir.D08G033900 Gossypium hirsutum HOM05D003020 ORTHO05D003226 2.7e-07 60.1 215 32.1
Lsat_1_v5_gn_7_54521 Lactuca sativa HOM05D003020 ORTHO05D003226 2.7e-07 60.1 240 29.6
Potri.006G168400 Populus trichocarpa HOM05D003020 ORTHO05D003226 2.7e-07 60.1 238 29.4
Glyma.20G083700 Glycine max HOM05D003020 ORTHO05D003226 3.6e-07 59.7 249 31.3
AT4G30230 Arabidopsis thaliana HOM05D003020 ORTHO05D003226 4.6e-07 59.3 244 28.3
Ca_04389_v3 Cicer arietinum L. HOM05D009308 ORTHO05D011513 4.6e-07 59.3 178 29.8
Eucgr.C02308 Eucalyptus grandis HOM05D003020 ORTHO05D003226 4.6e-07 59.3 246 30.5
RcHm_v2.0_Chr4g0402471 Rosa chinensis HOM05D003020 ORTHO05D003226 4.6e-07 59.3 260 28.8
Lj2g0018634 Lotus japonicus HOM05D009308 ORTHO05D011513 6.1e-07 58.9 185 33.5
Sabra08G0029800 Salix brachista HOM05D031226 ORTHO05D037394 6.1e-07 58.9 236 29.7
Lalb_Chr03g0036011 Lupinus albus HOM05D003020 ORTHO05D003226 1.0e-06 58.2 193 30.6
Psat1g081560 Pisum sativum HOM05D009308 ORTHO05D011513 1.0e-06 58.2 93 40.9
Psat1g081520 Pisum sativum HOM05D009308 ORTHO05D011513 1.4e-06 57.8 93 39.8
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 1.4e-06 57.8 207 29.0
Cfa001601 Carpinus fangiana HOM05D003020 ORTHO05D003226 1.8e-06 57.4 251 31.5
Glyma.15G265800 Glycine max HOM05D009308 ORTHO05D011513 1.8e-06 57.4 171 31.6
Medtr6g021860 Medicago truncatula HOM05D009308 ORTHO05D011513 1.8e-06 57.4 170 32.4
Potri.010G218300 Populus trichocarpa HOM05D003020 ORTHO05D003226 1.8e-06 57.4 246 27.2
SalBow4G1965 Salvia bowleyana HOM05D003020 ORTHO05D003226 1.8e-06 57.4 249 28.1
DCAR_017969 Daucus carota HOM05D003020 ORTHO05D003226 2.3e-06 57.0 252 27.8
Peaxi162Scf00890g00013 Petunia axillaris HOM05D011460 ORTHO05D010383 2.3e-06 57.0 173 31.2
MD16G1257900 Malus domestica HOM05D003020 ORTHO05D003226 3.0e-06 56.6 247 27.5
Prupe.1G086100 Prunus persica HOM05D003020 ORTHO05D003226 3.0e-06 56.6 249 26.9
Rhsim01G0004800 Rhododendron simsii HOM05D003020 ORTHO05D003226 3.0e-06 56.6 264 25.8
VMungo0464G0985 Vigna mungo HOM05D009308 ORTHO05D011513 3.0e-06 56.6 173 32.4
Atru.chr7.633 Acer truncatum HOM05D003020 ORTHO05D003226 3.9e-06 56.2 253 26.5
Actinidia03033 Actinidia chinensis HOM05D011460 ORTHO05D010383 3.9e-06 56.2 206 29.1
Eucgr.J01114 Eucalyptus grandis HOM05D003020 ORTHO05D003226 3.9e-06 56.2 256 27.7
CiPaw.05G049400 Carya illinoinensis HOM05D003020 ORTHO05D003226 5.1e-06 55.8 258 28.7
Medtr1g095730 Medicago truncatula HOM05D003020 ORTHO05D003226 5.1e-06 55.8 239 31.0
Peaxi162Scf00108g00165 Petunia axillaris HOM05D012114 ORTHO05D014153 5.1e-06 55.8 232 25.0
CiPaw.07G192300 Carya illinoinensis HOM05D003020 ORTHO05D003226 6.7e-06 55.5 261 28.0
Phvul.004G059900 Phaseolus vulgaris HOM05D009308 ORTHO05D011513 6.7e-06 55.5 177 32.8
MELO3C017464.2 Cucumis melo HOM05D003020 ORTHO05D003226 8.8e-06 55.1 267 26.2
Thhalv10026023m.g Eutrema salsugineum HOM05D003020 ORTHO05D003226 8.8e-06 55.1 239 25.5
Lj2g0007961 Lotus japonicus HOM05D009308 ORTHO05D011513 8.8e-06 55.1 183 31.1
Nitab4.5_0000233g0290 Nicotiana tabacum HOM05D012114 ORTHO05D014153 8.8e-06 55.1 246 30.5
Sabra16G0321600 Salix brachista HOM05D003020 ORTHO05D003226 8.8e-06 55.1 191 29.8
Sabra16G0323200 Salix brachista HOM05D003020 ORTHO05D003226 8.8e-06 55.1 191 29.8


User provided reference genes

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