Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 3.4e-116 421.8 229 100.0
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 2.0e-100 369.4 229 88.6
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 2.9e-99 365.5 229 81.2
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 4.9e-99 364.8 229 81.2
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 1.1e-98 363.6 229 80.8
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 3.9e-96 355.1 229 82.5
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 2.0e-87 326.2 228 78.1
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 3.7e-86 322.0 231 72.3
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 4.1e-85 318.5 231 71.0
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 2.0e-84 316.2 232 75.9
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 3.4e-84 315.5 230 70.9
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 4.5e-84 315.1 227 71.8
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 6.1e-81 304.7 233 71.2
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 1.5e-79 300.1 227 74.9
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 1.5e-79 300.1 227 74.9
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 2.0e-79 299.7 242 67.4
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 1.7e-78 296.6 233 69.5
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 1.1e-77 293.9 229 71.2
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 4.1e-77 292.0 232 73.7
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 5.3e-77 291.6 229 68.6
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 7.0e-77 291.2 238 71.0
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 9.1e-77 290.8 232 74.6
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 9.1e-77 290.8 229 75.5
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 4.5e-76 288.5 228 74.6
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 1.7e-75 286.6 231 69.7
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 2.2e-75 286.2 237 69.6
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 3.8e-75 285.4 232 72.4
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 1.9e-74 283.1 241 64.7
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 2.5e-74 282.7 229 72.9
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 7.2e-74 281.2 234 70.9
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 1.2e-73 280.4 237 68.8
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 1.2e-73 280.4 228 65.4
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 1.6e-73 280.0 234 65.0
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 1.6e-73 280.0 212 73.6
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 1.6e-73 280.0 235 65.5
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.6e-73 280.0 235 66.4
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 6.1e-73 278.1 235 64.3
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 1.0e-72 277.3 183 83.6
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 1.4e-72 276.9 234 62.4
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 3.9e-72 275.4 183 83.6
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 5.2e-72 275.0 237 64.6
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 5.2e-72 275.0 231 64.5
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 6.7e-72 274.6 234 70.1
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 8.8e-72 274.2 231 69.3
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 1.5e-71 273.5 232 69.4
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 1.5e-71 273.5 233 62.2
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 2.0e-71 273.1 226 69.0
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 2.0e-71 273.1 232 64.7
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 3.3e-71 272.3 224 66.5
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 3.3e-71 272.3 182 79.7
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 3.3e-71 272.3 221 67.9
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 4.4e-71 271.9 226 69.0
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 4.4e-71 271.9 226 68.1
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 5.7e-71 271.6 226 69.0
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 7.4e-71 271.2 234 64.5
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 7.4e-71 271.2 226 68.1
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 7.4e-71 271.2 227 70.5
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 9.7e-71 270.8 226 65.9
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 9.7e-71 270.8 226 68.1
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 9.7e-71 270.8 226 65.9
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 9.7e-71 270.8 226 68.1
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 9.7e-71 270.8 224 64.7
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 9.7e-71 270.8 226 67.7
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 1.3e-70 270.4 227 63.0
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 1.7e-70 270.0 235 68.9
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 2.2e-70 269.6 219 70.8
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 2.2e-70 269.6 241 61.0
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 2.8e-70 269.2 228 62.7
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 2.8e-70 269.2 226 64.2
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 2.8e-70 269.2 230 63.9
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 2.8e-70 269.2 230 63.9
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 3.7e-70 268.9 183 72.7
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 4.8e-70 268.5 228 62.3
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 4.8e-70 268.5 226 67.3
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 6.3e-70 268.1 231 66.7
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 8.2e-70 267.7 230 63.9
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 1.1e-69 267.3 226 68.6
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 1.4e-69 266.9 224 63.4
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 1.4e-69 266.9 236 66.5
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 1.8e-69 266.5 180 81.1
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 2.4e-69 266.2 225 61.3
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 3.1e-69 265.8 226 67.3
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 3.1e-69 265.8 226 69.0
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 3.1e-69 265.8 226 63.7
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 4.1e-69 265.4 221 64.3
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 9.1e-69 264.2 229 62.9
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 1.6e-68 263.5 237 62.9
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.0e-68 263.1 221 64.3
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 2.6e-68 262.7 223 69.1
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 3.5e-68 262.3 228 65.4
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 5.9e-68 261.5 227 70.5
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 7.7e-68 261.2 225 60.4
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 1.3e-67 260.4 228 67.1
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 1.7e-67 260.0 236 61.4
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 4.0e-64 248.8 230 63.5
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 1.2e-63 247.3 231 64.1
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 2.6e-63 246.1 194 71.6
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 9.7e-63 244.2 201 65.2
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 2.2e-62 243.0 179 73.2
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 4.8e-62 241.9 216 63.4
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.4e-61 240.4 176 77.8
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 2.4e-61 239.6 180 73.9
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 3.1e-61 239.2 181 72.4
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 1.2e-60 237.3 172 71.5
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 2.2e-59 233.0 179 72.1
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 2.5e-58 229.6 217 65.0
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 3.6e-49 199.1 139 69.1
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 7.0e-45 184.9 133 66.9
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 9.2e-45 184.5 184 57.6
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 9.5e-42 174.5 141 56.7
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 1.0e-40 171.0 140 59.3
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 1.0e-40 171.0 140 59.3
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 1.8e-40 170.2 140 57.9
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 2.3e-40 169.9 140 57.9
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 1.2e-39 167.5 140 55.7
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 1.2e-39 167.5 140 57.1
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 2.6e-39 166.4 140 57.1
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 2.6e-39 166.4 137 58.4
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 2.6e-39 166.4 228 47.8
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 2.6e-39 166.4 140 56.4
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 3.4e-39 166.0 140 56.4
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 3.4e-39 166.0 140 56.4
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 3.4e-39 166.0 140 56.4
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 4.4e-39 165.6 140 56.4
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 4.4e-39 165.6 140 56.4
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 7.5e-39 164.9 157 51.0
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 1.7e-38 163.7 140 55.7
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 8.3e-38 161.4 101 75.2
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 1.4e-32 144.1 162 46.3
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 3.1e-32 142.9 104 76.9
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 3.4e-31 139.4 229 48.5
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 9.8e-31 137.9 105 78.1
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 1.2e-28 131.0 179 43.0
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 2.1e-28 130.2 171 45.0
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 2.7e-28 129.8 142 44.4
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.7e-27 127.1 171 43.3
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 2.5e-26 123.2 131 60.3
GSVIVG01032650001 Vitis vinifera HOM05D004659 ORTHO05D005547 3.3e-26 122.9 224 44.6
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 4.7e-25 119.0 138 54.3
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 7.1e-21 105.1 197 39.6
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 7.8e-20 101.7 164 34.8
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 5.1e-19 99.0 199 35.7
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 1.1e-18 97.8 196 35.2
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 1.5e-18 97.4 93 59.1
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 3.3e-18 96.3 70 60.0
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 4.3e-18 95.9 67 67.2
Actinidia38237 Actinidia chinensis HOM05D004659 ORTHO05D005547 2.1e-17 93.6 100 54.0
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 3.5e-12 76.3 101 43.6
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 7.8e-12 75.1 112 41.1
Medtr3g058560 Medicago truncatula HOM05D004659 ORTHO05D005547 3.6e-09 66.2 48 64.6


User provided reference genes

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