Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G049900 Theobroma cacao HOM05D003242 ORTHO05D003593 2.4e-170 602.1 296 100.0
Thecc.10G049700 Theobroma cacao HOM05D003242 ORTHO05D003593 1.3e-78 297.4 344 53.8
Duzib128G0419 Durio zibethinus HOM05D003242 ORTHO05D003593 6.9e-53 211.8 339 40.1
Duzib114G0412 Durio zibethinus HOM05D003242 ORTHO05D003593 5.0e-51 205.7 371 36.4
Thecc.10G045400 Theobroma cacao HOM05D003242 ORTHO05D003593 4.8e-46 189.1 369 35.5
Thecc.10G045700 Theobroma cacao HOM05D003242 ORTHO05D003593 6.9e-45 185.3 350 37.4
Gohir.D05G300800 Gossypium hirsutum HOM05D003242 ORTHO05D003593 1.0e-40 171.4 348 35.6
Thecc.10G049100 Theobroma cacao HOM05D003242 ORTHO05D003593 3.0e-40 169.9 278 42.4
Gorai.009G318800 Gossypium raimondii HOM05D003242 ORTHO05D003593 8.8e-40 168.3 348 35.1
Duzib128G0244 Durio zibethinus HOM05D003242 ORTHO05D003593 3.3e-39 166.4 360 35.3
COL.COLO4_14935 Corchorus olitorius HOM05D003242 ORTHO05D003593 9.7e-39 164.9 332 36.7
Gorai.009G318600 Gossypium raimondii HOM05D003242 ORTHO05D003593 1.1e-37 161.4 282 39.7
Gohir.A05G300600 Gossypium hirsutum HOM05D003242 ORTHO05D003593 1.2e-36 157.9 337 34.1
Gorai.009G318700 Gossypium raimondii HOM05D003242 ORTHO05D003593 6.5e-35 152.1 354 31.4
Gohir.D05G300700 Gossypium hirsutum HOM05D003242 ORTHO05D003593 8.5e-35 151.8 354 31.4
Gohir.A05G301000 Gossypium hirsutum HOM05D003242 ORTHO05D003593 3.2e-34 149.8 354 31.9
Thecc.10G049400 Theobroma cacao HOM05D003242 ORTHO05D003593 2.7e-33 146.7 147 53.1
Thecc.10G045500 Theobroma cacao HOM05D003242 ORTHO05D003593 3.6e-33 146.4 271 38.4
Gohir.D05G300300 Gossypium hirsutum HOM05D003242 ORTHO05D003593 4.7e-33 146.0 357 31.4
Gorai.009G317800 Gossypium raimondii HOM05D003242 ORTHO05D003593 1.0e-32 144.8 357 31.1
Thecc.10G050500 Theobroma cacao HOM05D003242 ORTHO05D003593 1.4e-32 144.4 315 35.9
COL.COLO4_14938 Corchorus olitorius HOM05D003242 ORTHO05D003593 4.0e-32 142.9 408 31.1
Thecc.10G050400 Theobroma cacao HOM05D003242 ORTHO05D003593 4.0e-32 142.9 372 32.0
Thecc.10G051900 Theobroma cacao HOM05D003242 ORTHO05D003593 1.3e-30 137.9 303 33.0
Duzib114G0229 Durio zibethinus HOM05D003242 ORTHO05D003593 2.8e-30 136.7 313 33.2
COL.COLO4_26963 Corchorus olitorius HOM05D003242 ORTHO05D003593 8.2e-30 135.2 278 36.3
Duzib114G0726 Durio zibethinus HOM05D003242 ORTHO05D003593 1.1e-29 134.8 307 31.9
Cfa001524 Carpinus fangiana HOM05D003242 ORTHO05D003593 1.4e-29 134.4 319 30.4
Gorai.009G318400 Gossypium raimondii HOM05D003242 ORTHO05D003593 3.1e-29 133.3 369 29.8
Haze_17017 Corylus avellana HOM05D003242 ORTHO05D003593 5.3e-29 132.5 316 30.7
Manes.10G035100 Manihot esculenta HOM05D003242 ORTHO05D003593 1.2e-28 131.3 321 29.9
COL.COLO4_26932 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.6e-28 131.0 295 33.9
CiPaw.01G282600 Carya illinoinensis HOM05D003242 ORTHO05D003593 2.7e-28 130.2 311 31.8
Gorai.009G318500 Gossypium raimondii HOM05D003242 ORTHO05D003593 3.8e-27 126.3 145 46.9
Gohir.D05G300650 Gossypium hirsutum HOM05D003242 ORTHO05D003593 1.1e-26 124.8 145 46.9
Duzib114G0414 Durio zibethinus HOM05D003242 ORTHO05D003593 9.4e-26 121.7 301 30.2
Gohir.D05G300600 Gossypium hirsutum HOM05D003242 ORTHO05D003593 1.6e-25 120.9 375 28.8
COL.COLO4_14924 Corchorus olitorius HOM05D003242 ORTHO05D003593 6.1e-25 119.0 296 30.4
Duzib114G0233 Durio zibethinus HOM05D003242 ORTHO05D003593 8.0e-25 118.6 141 41.8
Cpa.g.sc1.352 Carica papaya HOM05D003242 ORTHO05D003593 1.8e-24 117.5 318 28.6
Gohir.D05G300333 Gossypium hirsutum HOM05D003242 ORTHO05D003593 3.0e-24 116.7 152 44.7
Sabra08G0035600 Salix brachista HOM05D003242 ORTHO05D003593 3.0e-24 116.7 337 30.0
Dinv31419 Davidia involucrata HOM05D003242 ORTHO05D003593 8.8e-24 115.2 248 33.1
Thecc.10G049300 Theobroma cacao HOM05D003242 ORTHO05D003593 4.4e-23 112.8 119 54.6
Atru.chr12.550 Acer truncatum HOM05D003242 ORTHO05D003593 5.7e-23 112.5 302 31.1
Thecc.10G048800 Theobroma cacao HOM05D003242 ORTHO05D003593 5.7e-23 112.5 371 28.3
COL.COLO4_14928 Corchorus olitorius HOM05D003242 ORTHO05D003593 9.8e-23 111.7 141 44.0
QL08p058711 Quercus lobata HOM05D003242 ORTHO05D003593 2.8e-22 110.2 306 30.7
Lsat_1_v5_gn_8_16120 Lactuca sativa HOM05D003242 ORTHO05D003593 8.3e-22 108.6 306 27.8
CSS0004742 Camellia sinensis var. sinensis HOM05D003242 ORTHO05D003593 1.8e-21 107.5 307 30.0
CANSAT56G4138 Cannabis sativa HOM05D003242 ORTHO05D003593 5.4e-21 105.9 278 28.4
COL.COLO4_14939 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.6e-20 104.4 148 45.3
COL.COLO4_14932 Corchorus olitorius HOM05D003242 ORTHO05D003593 3.5e-20 103.2 145 40.7
GSVIVG01016613001 Vitis vinifera HOM05D003242 ORTHO05D003593 5.9e-20 102.4 296 29.1
TWI63G1712 Tripterygium wilfordii HOM05D003242 ORTHO05D003593 1.0e-19 101.7 294 32.3
Gohir.A05G300566 Gossypium hirsutum HOM05D003242 ORTHO05D003593 1.7e-19 100.9 284 30.6
Phvul.008G014800 Phaseolus vulgaris HOM05D003242 ORTHO05D003593 2.3e-19 100.5 263 28.5
Thecc.10G049200 Theobroma cacao HOM05D003242 ORTHO05D003593 2.3e-19 100.5 114 50.0
Glyma.02G094600 Glycine max HOM05D003242 ORTHO05D003593 5.0e-19 99.4 254 28.7
CsaV3_5G026300 Cucumis sativus L. HOM05D003242 ORTHO05D003593 1.5e-18 97.8 336 26.8
Atru.chr12.524 Acer truncatum HOM05D003242 ORTHO05D003593 2.5e-18 97.1 232 31.9
Gorai.011G253200 Gossypium raimondii HOM05D003242 ORTHO05D003593 3.2e-18 96.7 265 26.8
COL.COLO4_26933 Corchorus olitorius HOM05D003242 ORTHO05D003593 4.2e-18 96.3 324 30.9
Dinv25974 Davidia involucrata HOM05D001198 ORTHO05D001599 7.2e-18 95.5 294 28.2
Gohir.D10G222800 Gossypium hirsutum HOM05D003242 ORTHO05D003593 9.5e-18 95.1 265 26.8
HanXRQChr12g0370641 Helianthus annuus HOM05D003242 ORTHO05D003593 9.5e-18 95.1 291 26.1
GSVIVG01016605001 Vitis vinifera HOM05D003242 ORTHO05D003593 2.1e-17 94.0 279 29.0
Gohir.A10G213733 Gossypium hirsutum HOM05D003242 ORTHO05D003593 2.8e-17 93.6 291 26.8
Ciclev10033375m.g Citrus clementina HOM05D003242 ORTHO05D003593 3.6e-17 93.2 150 38.7
Gorai.009G318000 Gossypium raimondii HOM05D003242 ORTHO05D003593 3.6e-17 93.2 118 47.5
Thecc.10G045600 Theobroma cacao HOM05D003242 ORTHO05D003593 6.1e-17 92.4 145 42.8
Psat6g236680 Pisum sativum HOM05D003242 ORTHO05D003593 1.4e-16 91.3 280 28.6
THA.LOC104824264 Tarenaya hassleriana HOM05D003242 ORTHO05D003593 3.0e-16 90.1 294 28.6
MELO3C025465.2 Cucumis melo HOM05D003242 ORTHO05D003593 4.0e-16 89.7 279 26.5
AT2G39490 Arabidopsis thaliana HOM05D003242 ORTHO05D003593 5.2e-16 89.4 254 27.2
TPR.G13993 Trifolium pratense HOM05D003242 ORTHO05D003593 2.0e-15 87.4 284 27.5
AL4G36880 Arabidopsis lyrata HOM05D003242 ORTHO05D003593 3.4e-15 86.7 260 27.7
AL938U10010 Arabidopsis lyrata HOM05D003242 ORTHO05D003593 3.4e-15 86.7 269 27.9
Carub.0004s2156 Capsella rubella HOM05D003242 ORTHO05D003593 9.8e-15 85.1 248 29.4
Medtr7g023360 Medicago truncatula HOM05D003242 ORTHO05D003593 1.3e-14 84.7 256 28.5
A05p06890 Brassica napus HOM05D003242 ORTHO05D003593 1.7e-14 84.3 269 27.5
BraA05t19654Z Brassica rapa HOM05D003242 ORTHO05D003593 1.7e-14 84.3 269 27.5
TPR.G15485 Trifolium pratense HOM05D003242 ORTHO05D003593 2.2e-14 84.0 263 28.1
BcaB02g09114 Brassica carinata HOM05D003242 ORTHO05D003593 3.7e-14 83.2 257 27.6
THA.LOC104810016 Tarenaya hassleriana HOM05D003242 ORTHO05D003593 4.9e-14 82.8 258 26.0
CARHR134360 Cardamine hirsuta HOM05D003242 ORTHO05D003593 1.4e-13 81.3 260 26.5
ECA233G4959 Erigeron canadensis HOM05D003242 ORTHO05D003593 1.4e-13 81.3 303 24.1
Lj5g0007270 Lotus japonicus HOM05D003242 ORTHO05D003593 1.4e-13 81.3 252 27.4
Gorai.009G318100 Gossypium raimondii HOM05D003242 ORTHO05D003593 3.1e-13 80.1 78 51.3
Lalb_Chr21g0307361 Lupinus albus HOM05D003242 ORTHO05D003593 3.1e-13 80.1 249 27.7
C04p08160 Brassica napus HOM05D003242 ORTHO05D003593 4.1e-13 79.7 269 27.5
Phvul.007G010900 Phaseolus vulgaris HOM05D003242 ORTHO05D003593 4.1e-13 79.7 263 25.5
Gohir.A05G300966 Gossypium hirsutum HOM05D003242 ORTHO05D003593 5.4e-13 79.3 91 48.4
Ciclev10033934m.g Citrus clementina HOM05D003242 ORTHO05D003593 9.2e-13 78.6 247 27.9
GSVIVG01016609001 Vitis vinifera HOM05D003242 ORTHO05D003593 9.2e-13 78.6 270 27.4
Glyma.10G290500 Glycine max HOM05D003242 ORTHO05D003593 1.2e-12 78.2 254 27.2
BolC4t22426H Brassica oleracea HOM05D003242 ORTHO05D003593 2.0e-12 77.4 269 27.1
Lj1g0018411 Lotus japonicus HOM05D003242 ORTHO05D003593 4.5e-12 76.3 102 39.2
Lj1g0028035 Lotus japonicus HOM05D003242 ORTHO05D003593 4.5e-12 76.3 102 39.2
BcaB06g29089 Brassica carinata HOM05D003242 ORTHO05D003593 5.9e-12 75.9 250 26.8
BraA07t29211Z Brassica rapa HOM05D003242 ORTHO05D003593 5.9e-12 75.9 250 27.6
Sed0020522 Sechium edule HOM05D003242 ORTHO05D003593 1.3e-11 74.7 205 28.8
BolC7t42681H Brassica oleracea HOM05D003242 ORTHO05D003593 2.9e-11 73.6 267 25.8
Sp4g21790 Schrenkiella parvula HOM05D003242 ORTHO05D003593 2.9e-11 73.6 269 24.9
C07p21570 Brassica napus HOM05D003242 ORTHO05D003593 3.8e-11 73.2 249 26.1
ClCG07G003130 Citrullus lanatus HOM05D003242 ORTHO05D003593 5.0e-11 72.8 205 28.8
CsaV3_5G006860 Cucumis sativus L. HOM05D003242 ORTHO05D003593 5.0e-11 72.8 229 26.2
Thhalv10016769m.g Eutrema salsugineum HOM05D003242 ORTHO05D003593 8.6e-11 72.0 236 26.3
Nn2g12888 Nelumbo nucifera HOM05D003242 ORTHO05D003593 8.6e-11 72.0 302 23.2
Gohir.D05G300366 Gossypium hirsutum HOM05D003242 ORTHO05D003593 1.5e-10 71.2 66 50.0
Dinv35647 Davidia involucrata HOM05D003242 ORTHO05D003593 2.5e-10 70.5 306 22.9
TAR369G0738 Trochodendron aralioides HOM05D003242 ORTHO05D003593 2.5e-10 70.5 271 24.7
Dinv37214 Davidia involucrata HOM05D003242 ORTHO05D003593 3.3e-10 70.1 323 23.8
Lj3A972T46 Lonicera japonica HOM05D003242 ORTHO05D003593 3.3e-10 70.1 293 23.5
BcaC06g34938 Brassica carinata HOM05D003242 ORTHO05D003593 4.3e-10 69.7 249 25.7
Atru.chr12.549 Acer truncatum HOM05D003242 ORTHO05D003593 7.3e-10 68.9 211 28.9
Duzib114G0435 Durio zibethinus HOM05D003242 ORTHO05D003593 7.3e-10 68.9 259 24.3
Glyma.20G098700 Glycine max HOM05D003242 ORTHO05D003593 1.2e-09 68.2 243 26.3
Eucgr.A01226 Eucalyptus grandis HOM05D003242 ORTHO05D003593 2.1e-09 67.4 273 23.4
Gohir.A10G213700 Gossypium hirsutum HOM05D003242 ORTHO05D003593 2.8e-09 67.0 234 27.4
TAR623G0165 Trochodendron aralioides HOM05D003242 ORTHO05D003593 2.8e-09 67.0 301 24.6
A07p14680 Brassica napus HOM05D003242 ORTHO05D003593 3.6e-09 66.6 243 25.9
Potri.008G050800 Populus trichocarpa HOM05D003242 ORTHO05D003593 3.6e-09 66.6 217 26.7
ClCG09G020160 Citrullus lanatus HOM05D003242 ORTHO05D003593 8.0e-09 65.5 222 28.4
COL.COLO4_14934 Corchorus olitorius HOM05D003242 ORTHO05D003593 8.0e-09 65.5 265 27.5
Atru.chr12.525 Acer truncatum HOM05D003242 ORTHO05D003593 1.0e-08 65.1 72 48.6
Glyma.18G286800 Glycine max HOM05D003242 ORTHO05D003593 2.3e-08 63.9 63 44.4
GSVIVG01016607001 Vitis vinifera HOM05D003242 ORTHO05D003593 2.3e-08 63.9 70 50.0
Gorai.011G253300 Gossypium raimondii HOM05D003242 ORTHO05D003593 3.0e-08 63.5 217 29.0
GSVIVG01016608001 Vitis vinifera HOM05D003242 ORTHO05D003593 4.0e-08 63.2 113 31.9
COL.COLO4_14929 Corchorus olitorius HOM05D003242 ORTHO05D003593 8.9e-08 62.0 97 38.1
Lj2C101G9 Lonicera japonica HOM05D003242 ORTHO05D003593 8.9e-08 62.0 294 22.1
QL07p046683 Quercus lobata HOM05D003242 ORTHO05D003593 8.9e-08 62.0 199 27.1
Oeu024369.3 Olea europaea HOM05D003242 ORTHO05D003593 1.2e-07 61.6 308 22.7
vmacro08675 Vaccinium macrocarpon HOM05D003242 ORTHO05D003593 1.2e-07 61.6 300 23.7
Ca_30311_v3 Cicer arietinum L. HOM05D003242 ORTHO05D003593 2.0e-07 60.8 103 33.0
Thecc.10G049000 Theobroma cacao HOM05D003242 ORTHO05D003593 3.4e-07 60.1 108 36.1
PGR004G1133 Punica granatum HOM05D003242 ORTHO05D003593 5.7e-07 59.3 218 24.8
Eucgr.A01227 Eucalyptus grandis HOM05D003242 ORTHO05D003593 7.5e-07 58.9 278 20.1
GSVIVG01025608001 Vitis vinifera HOM05D003242 ORTHO05D003593 7.5e-07 58.9 279 22.9
COL.COLO4_14873 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.7e-06 57.8 271 21.4
VMungo0720G0087 Vigna mungo HOM05D003242 ORTHO05D003593 1.7e-06 57.8 186 26.3
Gohir.A05G300900 Gossypium hirsutum HOM05D003242 ORTHO05D003593 2.2e-06 57.4 259 26.3
Thecc.05G046100 Theobroma cacao HOM05D003242 ORTHO05D003593 4.9e-06 56.2 281 20.6
Aa31LG5G20110 Aethionema arabicum HOM05D003242 ORTHO05D003593 8.3e-06 55.5 82 36.6
FvH4_7g21530 Fragaria vesca HOM05D003242 ORTHO05D003593 8.3e-06 55.5 90 35.6
FAN01G0554 Fragaria x ananassa HOM05D003242 ORTHO05D003593 8.3e-06 55.5 90 35.6
FAN06G1309 Fragaria x ananassa HOM05D003242 ORTHO05D003593 8.3e-06 55.5 90 35.6
FAN06G2116 Fragaria x ananassa HOM05D003242 ORTHO05D003593 8.3e-06 55.5 90 35.6
Rhsim04G0153600 Rhododendron simsii HOM05D003242 ORTHO05D003593 8.3e-06 55.5 264 23.1


User provided reference genes

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