Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G048500 Theobroma cacao HOM05D008199 ORTHO05D010334 3.4e-25 117.5 56 100.0
Cpa.g.sc1.358 Carica papaya HOM05D008199 ORTHO05D010334 3.4e-17 90.9 52 78.8
Dinv31422 Davidia involucrata HOM05D000953 ORTHO05D000231 5.8e-17 90.1 50 84.0
CSS0014372 Camellia sinensis var. sinensis HOM05D008199 ORTHO05D010334 2.2e-16 88.2 49 81.6
Gohir.D04G061900 Gossypium hirsutum HOM05D008199 ORTHO05D010334 2.9e-16 87.8 45 84.4
Gohir.A05G350700 Gossypium hirsutum HOM05D008199 ORTHO05D010334 3.7e-16 87.4 45 84.4
Gorai.012G069200 Gossypium raimondii HOM05D008199 ORTHO05D010334 3.7e-16 87.4 45 84.4
ECA238G2613 Erigeron canadensis HOM05D008199 ORTHO05D010334 8.3e-16 86.3 51 74.5
C04p08150 Brassica napus HOM05D008199 ORTHO05D010334 1.4e-15 85.5 54 68.5
BolC4t22425H Brassica oleracea HOM05D008199 ORTHO05D010334 1.4e-15 85.5 54 68.5
Ciclev10033682m.g Citrus clementina HOM05D008199 ORTHO05D010334 1.4e-15 85.5 43 88.4
THA.LOC104824262 Tarenaya hassleriana HOM05D008199 ORTHO05D010334 1.4e-15 85.5 45 80.0
Actinidia07733 Actinidia chinensis HOM05D008199 ORTHO05D010334 2.4e-15 84.7 42 88.1
Actinidia34336 Actinidia chinensis HOM05D008199 ORTHO05D010334 2.4e-15 84.7 42 88.1
Atru.chr12.520 Acer truncatum HOM05D008199 ORTHO05D010334 5.4e-15 83.6 45 82.2
BcaC02g12078 Brassica carinata HOM05D008199 ORTHO05D010334 5.4e-15 83.6 54 66.7
A05p06880 Brassica napus HOM05D008199 ORTHO05D010334 5.4e-15 83.6 54 66.7
BraA05t19653Z Brassica rapa HOM05D008199 ORTHO05D010334 5.4e-15 83.6 54 66.7
Actinidia02971 Actinidia chinensis HOM05D008199 ORTHO05D010334 9.2e-15 82.8 42 88.1
Manes.07G111800 Manihot esculenta HOM05D008199 ORTHO05D010334 9.2e-15 82.8 41 87.8
Lsat_1_v5_gn_2_117560 Lactuca sativa HOM05D008199 ORTHO05D010334 1.2e-14 82.4 49 75.5
Nn2g10469 Nelumbo nucifera HOM05D008199 ORTHO05D010334 1.6e-14 82.0 44 81.8
Potri.008G051100 Populus trichocarpa HOM05D008199 ORTHO05D010334 1.6e-14 82.0 48 77.1
PGR142G1326 Punica granatum HOM05D008199 ORTHO05D010334 1.6e-14 82.0 41 87.8
COL.COLO4_14948 Corchorus olitorius HOM05D008199 ORTHO05D010334 2.0e-14 81.6 53 67.9
Aa31LG5G20100 Aethionema arabicum HOM05D008199 ORTHO05D010334 3.5e-14 80.9 45 73.3
Cfa001517 Carpinus fangiana HOM05D008199 ORTHO05D010334 4.6e-14 80.5 41 85.4
CARHR134390 Cardamine hirsuta HOM05D008199 ORTHO05D010334 7.8e-14 79.7 45 73.3
RcHm_v2.0_Chr1g0366131 Rosa chinensis HOM05D008199 ORTHO05D010334 7.8e-14 79.7 48 72.9
Sed0003138 Sechium edule HOM05D008199 ORTHO05D010334 7.8e-14 79.7 41 82.9
CiPaw.01G282700 Carya illinoinensis HOM05D008199 ORTHO05D010334 1.0e-13 79.3 44 79.5
Manes.10G036000 Manihot esculenta HOM05D008199 ORTHO05D010334 1.0e-13 79.3 46 71.7
Sc20g0002530 Simmondsia chinensis HOM05D008199 ORTHO05D010334 1.0e-13 79.3 41 82.9
CAN.G74.25 Capsicum annuum HOM05D008199 ORTHO05D010334 1.3e-13 79.0 48 75.0
Sp4g21800 Schrenkiella parvula HOM05D008199 ORTHO05D010334 1.7e-13 78.6 45 71.1
TAR633G0052 Trochodendron aralioides HOM05D008199 ORTHO05D010334 1.7e-13 78.6 48 70.8
Medtr1g115355 Medicago truncatula HOM05D008199 ORTHO05D010334 2.3e-13 78.2 41 80.5
Prupe.2G230900 Prunus persica HOM05D008199 ORTHO05D010334 2.3e-13 78.2 48 72.9
PGSC0003DMG400029465 Solanum tuberosum HOM05D008199 ORTHO05D010334 2.3e-13 78.2 48 75.0
CANSAT11G0099 Cannabis sativa HOM05D008199 ORTHO05D010334 3.0e-13 77.8 48 72.9
Carub.0004s2158 Capsella rubella HOM05D008199 ORTHO05D010334 3.9e-13 77.4 45 71.1
TWI38G1458 Tripterygium wilfordii HOM05D008199 ORTHO05D010334 5.0e-13 77.0 51 70.6
ClCG09G020150 Citrullus lanatus HOM05D008199 ORTHO05D010334 6.6e-13 76.6 43 76.7
Hma1.2p1_0727F.1_g209100 Hydrangea macrophylla HOM05D008199 ORTHO05D010334 6.6e-13 76.6 49 69.4
MD01G1123400 Malus domestica HOM05D008199 ORTHO05D010334 6.6e-13 76.6 44 77.3
GSVIVG01016602001 Vitis vinifera HOM05D000953 ORTHO05D000231 8.6e-13 76.3 41 75.6
Lj5g0016979 Lotus japonicus HOM05D008199 ORTHO05D010334 1.1e-12 75.9 46 73.9
Psat6g236360 Pisum sativum HOM05D008199 ORTHO05D010334 1.1e-12 75.9 41 78.0
Oeu021440.1 Olea europaea HOM05D008199 ORTHO05D010334 1.9e-12 75.1 42 73.8
AL4G36900 Arabidopsis lyrata HOM05D008199 ORTHO05D010334 3.3e-12 74.3 42 71.4
AL4G36920 Arabidopsis lyrata HOM05D008199 ORTHO05D010334 3.3e-12 74.3 42 71.4
Glyma.20G099000 Glycine max HOM05D008199 ORTHO05D010334 3.3e-12 74.3 41 75.6
AT2G39500 Arabidopsis thaliana HOM05D008199 ORTHO05D010334 4.3e-12 73.9 42 69.0
DCAR_027672 Daucus carota HOM05D008199 ORTHO05D010334 4.3e-12 73.9 43 72.1
Aqoxy5G00469 Aquilegia oxysepala HOM05D008199 ORTHO05D010334 7.3e-12 73.2 52 63.5
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 7.3e-12 73.2 45 68.9
Duzib128G0439 Durio zibethinus HOM05D008199 ORTHO05D010334 2.1e-11 71.6 45 71.1
Migut.F01496 Erythranthe guttata HOM05D008199 ORTHO05D010334 2.1e-11 71.6 45 71.1
Lalb_Chr02g0144051 Lupinus albus HOM05D008199 ORTHO05D010334 2.8e-11 71.2 39 76.9
Phvul.007G011200 Phaseolus vulgaris HOM05D008199 ORTHO05D010334 8.0e-11 69.7 41 68.3
PSO339G4122 Papaver somniferum HOM05D008199 ORTHO05D010334 1.8e-10 68.6 37 75.7
MBI05_g35603_MAGBIO Magnolia biondii HOM05D008199 ORTHO05D010334 6.8e-10 66.6 42 66.7
SEGI_29944 Sequoiadendron giganteum HOM05D008199 ORTHO05D010334 1.2e-09 65.9 36 72.2
HanXRQChr16g0507891 Helianthus annuus HOM05D008199 ORTHO05D010334 1.1e-07 59.3 50 60.0
SHI12594 Sapria himalayana HOM05D008199 ORTHO05D010334 5.4e-07 57.0 66 42.4
Pp3c9_50 Physcomitrium patens HOM05D008199 ORTHO05D010334 2.7e-06 54.7 46 52.2


User provided reference genes

Program Settings