Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G045600 Theobroma cacao HOM05D003242 ORTHO05D003593 3.2e-121 438.3 208 100.0
Thecc.10G045400 Theobroma cacao HOM05D003242 ORTHO05D003593 1.7e-77 293.1 226 67.3
Thecc.10G045700 Theobroma cacao HOM05D003242 ORTHO05D003593 4.8e-77 291.6 225 68.9
Duzib114G0412 Durio zibethinus HOM05D003242 ORTHO05D003593 1.4e-60 236.9 228 56.6
Gohir.D05G300300 Gossypium hirsutum HOM05D003242 ORTHO05D003593 2.5e-57 226.1 227 55.1
Gorai.009G317800 Gossypium raimondii HOM05D003242 ORTHO05D003593 2.5e-57 226.1 227 55.1
Gorai.009G318800 Gossypium raimondii HOM05D003242 ORTHO05D003593 6.8e-55 218.0 227 52.4
Gohir.D05G300800 Gossypium hirsutum HOM05D003242 ORTHO05D003593 2.0e-54 216.5 227 52.0
Gorai.009G318500 Gossypium raimondii HOM05D003242 ORTHO05D003593 3.4e-54 215.7 226 51.8
Gohir.D05G300650 Gossypium hirsutum HOM05D003242 ORTHO05D003593 4.9e-53 211.8 226 51.8
Gohir.A05G300600 Gossypium hirsutum HOM05D003242 ORTHO05D003593 9.2e-52 207.6 224 50.9
Gohir.A05G301000 Gossypium hirsutum HOM05D003242 ORTHO05D003593 2.0e-51 206.5 228 49.6
Gohir.D05G300700 Gossypium hirsutum HOM05D003242 ORTHO05D003593 2.0e-51 206.5 228 49.6
Gorai.009G318700 Gossypium raimondii HOM05D003242 ORTHO05D003593 2.7e-51 206.1 228 49.6
Duzib114G0233 Durio zibethinus HOM05D003242 ORTHO05D003593 1.3e-50 203.8 199 55.3
Gorai.009G318400 Gossypium raimondii HOM05D003242 ORTHO05D003593 1.7e-45 186.8 232 48.3
Gorai.009G318600 Gossypium raimondii HOM05D003242 ORTHO05D003593 2.7e-43 179.5 202 49.5
Gohir.D05G300600 Gossypium hirsutum HOM05D003242 ORTHO05D003593 6.6e-42 174.9 238 46.2
Duzib128G0419 Durio zibethinus HOM05D003242 ORTHO05D003593 1.1e-41 174.1 225 47.6
Gohir.A05G300966 Gossypium hirsutum HOM05D003242 ORTHO05D003593 7.1e-36 154.8 129 58.9
COL.COLO4_14938 Corchorus olitorius HOM05D003242 ORTHO05D003593 8.6e-34 147.9 184 48.4
Gohir.D05G300333 Gossypium hirsutum HOM05D003242 ORTHO05D003593 4.3e-33 145.6 154 51.3
Thecc.10G049400 Theobroma cacao HOM05D003242 ORTHO05D003593 4.9e-29 132.1 225 41.3
Gohir.A05G300900 Gossypium hirsutum HOM05D003242 ORTHO05D003593 3.5e-27 125.9 123 55.3
COL.COLO4_14935 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.7e-26 123.6 187 41.2
Thecc.10G049700 Theobroma cacao HOM05D003242 ORTHO05D003593 6.6e-26 121.7 176 41.5
Duzib128G0244 Durio zibethinus HOM05D003242 ORTHO05D003593 2.5e-25 119.8 233 37.8
Thecc.10G045500 Theobroma cacao HOM05D003242 ORTHO05D003593 4.3e-25 119.0 131 51.9
Thecc.10G049300 Theobroma cacao HOM05D003242 ORTHO05D003593 7.3e-25 118.2 76 72.4
COL.COLO4_14939 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.2e-24 117.5 178 39.9
Thecc.10G049100 Theobroma cacao HOM05D003242 ORTHO05D003593 1.1e-23 114.4 142 48.6
Thecc.10G050500 Theobroma cacao HOM05D003242 ORTHO05D003593 1.2e-22 110.9 234 36.3
Duzib114G0726 Durio zibethinus HOM05D003242 ORTHO05D003593 9.9e-22 107.8 186 43.5
Gorai.009G318100 Gossypium raimondii HOM05D003242 ORTHO05D003593 8.4e-21 104.8 104 51.0
Duzib114G0229 Durio zibethinus HOM05D003242 ORTHO05D003593 1.1e-20 104.4 224 35.7
COL.COLO4_14928 Corchorus olitorius HOM05D003242 ORTHO05D003593 3.2e-20 102.8 181 41.4
COL.COLO4_26963 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.2e-19 100.9 148 41.9
Gorai.009G318000 Gossypium raimondii HOM05D003242 ORTHO05D003593 1.6e-19 100.5 119 48.7
COL.COLO4_26932 Corchorus olitorius HOM05D003242 ORTHO05D003593 2.1e-19 100.1 140 44.3
Thecc.10G048800 Theobroma cacao HOM05D003242 ORTHO05D003593 3.5e-19 99.4 222 37.4
Gohir.A05G300566 Gossypium hirsutum HOM05D003242 ORTHO05D003593 3.0e-18 96.3 243 30.9
QL08p058711 Quercus lobata HOM05D003242 ORTHO05D003593 3.0e-18 96.3 232 34.5
THA.LOC104824264 Tarenaya hassleriana HOM05D003242 ORTHO05D003593 1.1e-17 94.4 174 35.6
Thecc.10G049200 Theobroma cacao HOM05D003242 ORTHO05D003593 1.1e-17 94.4 195 35.9
Sabra08G0035600 Salix brachista HOM05D003242 ORTHO05D003593 7.3e-17 91.7 109 46.8
Thecc.10G049900 Theobroma cacao HOM05D003242 ORTHO05D003593 9.6e-17 91.3 145 42.8
COL.COLO4_14932 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.3e-16 90.9 179 36.9
Thecc.10G050400 Theobroma cacao HOM05D003242 ORTHO05D003593 2.1e-16 90.1 200 36.5
Cpa.g.sc1.352 Carica papaya HOM05D003242 ORTHO05D003593 3.6e-16 89.4 210 34.3
COL.COLO4_14924 Corchorus olitorius HOM05D003242 ORTHO05D003593 3.6e-16 89.4 197 36.5
Lsat_1_v5_gn_8_16120 Lactuca sativa HOM05D003242 ORTHO05D003593 3.6e-16 89.4 109 42.2
Dinv25974 Davidia involucrata HOM05D001198 ORTHO05D001599 8.1e-16 88.2 118 40.7
Cfa001524 Carpinus fangiana HOM05D003242 ORTHO05D003593 3.1e-15 86.3 186 36.6
CiPaw.01G282600 Carya illinoinensis HOM05D003242 ORTHO05D003593 4.0e-15 85.9 204 35.8
Thecc.10G051900 Theobroma cacao HOM05D003242 ORTHO05D003593 4.0e-15 85.9 194 36.6
GSVIVG01016605001 Vitis vinifera HOM05D003242 ORTHO05D003593 5.3e-15 85.5 126 42.1
Manes.10G035100 Manihot esculenta HOM05D003242 ORTHO05D003593 1.2e-14 84.3 201 33.3
GSVIVG01016613001 Vitis vinifera HOM05D003242 ORTHO05D003593 1.5e-14 84.0 188 35.1
Duzib114G0414 Durio zibethinus HOM05D003242 ORTHO05D003593 2.0e-14 83.6 218 33.0
Lalb_Chr21g0307361 Lupinus albus HOM05D003242 ORTHO05D003593 2.6e-14 83.2 158 36.1
ClCG07G003130 Citrullus lanatus HOM05D003242 ORTHO05D003593 5.8e-14 82.0 88 46.6
THA.LOC104810016 Tarenaya hassleriana HOM05D003242 ORTHO05D003593 9.9e-14 81.3 132 38.6
Haze_17017 Corylus avellana HOM05D003242 ORTHO05D003593 1.3e-13 80.9 108 44.4
BcaB02g09114 Brassica carinata HOM05D003242 ORTHO05D003593 1.7e-13 80.5 103 41.7
MELO3C025465.2 Cucumis melo HOM05D003242 ORTHO05D003593 2.9e-13 79.7 194 32.5
Sp4g21790 Schrenkiella parvula HOM05D003242 ORTHO05D003593 4.9e-13 79.0 105 42.9
CsaV3_5G006860 Cucumis sativus L. HOM05D003242 ORTHO05D003593 6.4e-13 78.6 184 31.0
Lj1g0018411 Lotus japonicus HOM05D003242 ORTHO05D003593 6.4e-13 78.6 99 44.4
Lj1g0028035 Lotus japonicus HOM05D003242 ORTHO05D003593 6.4e-13 78.6 99 44.4
AT2G39490 Arabidopsis thaliana HOM05D003242 ORTHO05D003593 8.4e-13 78.2 100 42.0
Carub.0004s2156 Capsella rubella HOM05D003242 ORTHO05D003593 8.4e-13 78.2 104 44.2
CARHR134360 Cardamine hirsuta HOM05D003242 ORTHO05D003593 1.1e-12 77.8 107 42.1
Lj5g0007270 Lotus japonicus HOM05D003242 ORTHO05D003593 1.1e-12 77.8 136 35.3
A05p06890 Brassica napus HOM05D003242 ORTHO05D003593 1.4e-12 77.4 101 40.6
BraA05t19654Z Brassica rapa HOM05D003242 ORTHO05D003593 1.4e-12 77.4 101 40.6
Atru.chr12.550 Acer truncatum HOM05D003242 ORTHO05D003593 1.9e-12 77.0 190 34.2
C07p21570 Brassica napus HOM05D003242 ORTHO05D003593 1.9e-12 77.0 101 41.6
BolC7t42681H Brassica oleracea HOM05D003242 ORTHO05D003593 1.9e-12 77.0 101 41.6
ECA233G4959 Erigeron canadensis HOM05D003242 ORTHO05D003593 1.9e-12 77.0 187 30.5
Thhalv10016769m.g Eutrema salsugineum HOM05D003242 ORTHO05D003593 1.9e-12 77.0 100 40.0
C04p08160 Brassica napus HOM05D003242 ORTHO05D003593 2.4e-12 76.6 106 42.5
Medtr1g115400 Medicago truncatula HOM05D003242 ORTHO05D003593 3.2e-12 76.3 119 40.3
AL4G36880 Arabidopsis lyrata HOM05D003242 ORTHO05D003593 4.2e-12 75.9 101 40.6
TWI63G1712 Tripterygium wilfordii HOM05D003242 ORTHO05D003593 5.4e-12 75.5 138 34.8
BcaB06g29089 Brassica carinata HOM05D003242 ORTHO05D003593 1.2e-11 74.3 106 40.6
BolC4t22426H Brassica oleracea HOM05D003242 ORTHO05D003593 1.2e-11 74.3 106 41.5
HanXRQChr12g0370641 Helianthus annuus HOM05D003242 ORTHO05D003593 1.2e-11 74.3 184 31.5
TPR.G13993 Trifolium pratense HOM05D003242 ORTHO05D003593 1.2e-11 74.3 110 38.2
BcaC06g34938 Brassica carinata HOM05D003242 ORTHO05D003593 1.6e-11 73.9 101 40.6
BraA07t29211Z Brassica rapa HOM05D003242 ORTHO05D003593 2.1e-11 73.6 102 40.2
AL938U10010 Arabidopsis lyrata HOM05D003242 ORTHO05D003593 3.5e-11 72.8 99 40.4
CSS0004742 Camellia sinensis var. sinensis HOM05D003242 ORTHO05D003593 3.5e-11 72.8 201 29.4
CANSAT56G4138 Cannabis sativa HOM05D003242 ORTHO05D003593 4.6e-11 72.4 107 39.3
Aa31LG5G20110 Aethionema arabicum HOM05D003242 ORTHO05D003593 6.0e-11 72.0 103 39.8
CsaV3_5G026300 Cucumis sativus L. HOM05D003242 ORTHO05D003593 6.0e-11 72.0 112 41.1
Phvul.007G010900 Phaseolus vulgaris HOM05D003242 ORTHO05D003593 3.0e-10 69.7 107 37.4
Lalb_Chr04g0257911 Lupinus albus HOM05D003242 ORTHO05D003593 3.9e-10 69.3 129 37.2
Phvul.008G014800 Phaseolus vulgaris HOM05D003242 ORTHO05D003593 3.9e-10 69.3 102 40.2
FAN01G0554 Fragaria x ananassa HOM05D003242 ORTHO05D003593 6.7e-10 68.6 107 40.2
Sed0020522 Sechium edule HOM05D003242 ORTHO05D003593 6.7e-10 68.6 74 48.6
Thecc.10G050300 Theobroma cacao HOM05D003242 ORTHO05D003593 8.7e-10 68.2 168 33.9
Psat6g236680 Pisum sativum HOM05D003242 ORTHO05D003593 1.5e-09 67.4 129 35.7
TPR.G15485 Trifolium pratense HOM05D003242 ORTHO05D003593 1.5e-09 67.4 124 37.1
TAR623G0165 Trochodendron aralioides HOM05D003242 ORTHO05D003593 1.5e-09 67.4 85 43.5
Glyma.20G098700 Glycine max HOM05D003242 ORTHO05D003593 1.9e-09 67.0 116 32.8
Atru.chr12.523 Acer truncatum HOM05D003242 ORTHO05D003593 2.5e-09 66.6 91 37.4
Ciclev10033375m.g Citrus clementina HOM05D003242 ORTHO05D003593 2.5e-09 66.6 179 34.6
Potri.008G050800 Populus trichocarpa HOM05D003242 ORTHO05D003593 2.5e-09 66.6 75 48.0
TAR369G0738 Trochodendron aralioides HOM05D003242 ORTHO05D003593 2.5e-09 66.6 179 30.2
Nn2g12888 Nelumbo nucifera HOM05D003242 ORTHO05D003593 4.3e-09 65.9 130 30.8
Dinv31419 Davidia involucrata HOM05D003242 ORTHO05D003593 5.6e-09 65.5 188 30.3
A07p14680 Brassica napus HOM05D003242 ORTHO05D003593 7.4e-09 65.1 65 46.2
FvH4_7g21530 Fragaria vesca HOM05D003242 ORTHO05D003593 7.4e-09 65.1 107 38.3
FAN06G1309 Fragaria x ananassa HOM05D003242 ORTHO05D003593 7.4e-09 65.1 107 38.3
FAN06G2116 Fragaria x ananassa HOM05D003242 ORTHO05D003593 7.4e-09 65.1 107 38.3
Glyma.10G290500 Glycine max HOM05D003242 ORTHO05D003593 7.4e-09 65.1 118 32.2
Lj3A972T46 Lonicera japonica HOM05D003242 ORTHO05D003593 1.3e-08 64.3 127 33.1
Dinv37215 Davidia involucrata HOM05D003242 ORTHO05D003593 2.1e-08 63.5 173 29.5
Duzib114G0435 Durio zibethinus HOM05D003242 ORTHO05D003593 2.1e-08 63.5 159 30.8
Lj1g0019421 Lotus japonicus HOM05D003242 ORTHO05D003593 2.1e-08 63.5 65 47.7
Cc06_g03080 Coffea canephora HOM05D003242 ORTHO05D003593 2.8e-08 63.2 91 42.9
Eucgr.A01226 Eucalyptus grandis HOM05D003242 ORTHO05D003593 3.7e-08 62.8 84 41.7
GSVIVG01016608001 Vitis vinifera HOM05D003242 ORTHO05D003593 8.1e-08 61.6 100 33.0
GSVIVG01016609001 Vitis vinifera HOM05D003242 ORTHO05D003593 8.1e-08 61.6 100 31.0
GSVIVG01025608001 Vitis vinifera HOM05D003242 ORTHO05D003593 8.1e-08 61.6 92 41.3
COL.COLO4_14873 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.1e-07 61.2 127 33.9
Actinidia19757 Actinidia chinensis HOM05D003242 ORTHO05D003593 1.4e-07 60.8 97 40.2
Duzib093G1770 Durio zibethinus HOM05D003242 ORTHO05D003593 1.4e-07 60.8 94 37.2
COL.COLO4_14872 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.8e-07 60.5 83 42.2
Duzib128G1376 Durio zibethinus HOM05D003242 ORTHO05D003593 1.8e-07 60.5 90 37.8
GSVIVG01016607001 Vitis vinifera HOM05D003242 ORTHO05D003593 2.4e-07 60.1 76 40.8
Hma1.2p1_0192F.1_g083590 Hydrangea macrophylla HOM05D003242 ORTHO05D003593 6.9e-07 58.5 83 38.6
Eucgr.A01227 Eucalyptus grandis HOM05D003242 ORTHO05D003593 1.2e-06 57.8 84 39.3
Eucgr.A01228 Eucalyptus grandis HOM05D003242 ORTHO05D003593 1.2e-06 57.8 84 39.3
MD07G1191500 Malus domestica HOM05D003242 ORTHO05D003593 1.2e-06 57.8 129 33.3
COL.COLO4_14871 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.5e-06 57.4 85 38.8
Medtr7g023360 Medicago truncatula HOM05D003242 ORTHO05D003593 2.6e-06 56.6 73 45.2
Dinv37214 Davidia involucrata HOM05D003242 ORTHO05D003593 3.4e-06 56.2 90 37.8
VMungo0720G0087 Vigna mungo HOM05D003242 ORTHO05D003593 4.5e-06 55.8 75 40.0
FAN03G2136 Fragaria x ananassa HOM05D003242 ORTHO05D003593 5.8e-06 55.5 107 36.4
Prupe.6G249000 Prunus persica HOM05D003242 ORTHO05D003593 5.8e-06 55.5 90 37.8
PGR004G0625 Punica granatum HOM05D003242 ORTHO05D003593 5.8e-06 55.5 83 38.6
Thecc.05G046100 Theobroma cacao HOM05D003242 ORTHO05D003593 7.6e-06 55.1 140 30.7
QL07p046683 Quercus lobata HOM05D003242 ORTHO05D003593 9.9e-06 54.7 83 39.8
RcHm_v2.0_Chr1g0365841 Rosa chinensis HOM05D003242 ORTHO05D003593 9.9e-06 54.7 74 39.2


User provided reference genes

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