Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G044100 Theobroma cacao HOM05D007136 ORTHO05D008986 7.0e-173 610.5 310 100.0
Gorai.011G257200 Gossypium raimondii HOM05D007136 ORTHO05D008986 6.8e-152 540.8 310 85.5
Gohir.D10G226000 Gossypium hirsutum HOM05D007136 ORTHO05D008986 1.5e-151 539.7 310 85.2
Gohir.A10G217300 Gossypium hirsutum HOM05D007136 ORTHO05D008986 2.6e-151 538.9 310 85.2
COL.COLO4_14997 Corchorus olitorius HOM05D007136 ORTHO05D008986 7.3e-138 494.2 354 74.0
GSVIVG01016535001 Vitis vinifera HOM05D007136 ORTHO05D008986 4.6e-132 474.9 309 74.1
Atru.chr12.462 Acer truncatum HOM05D007136 ORTHO05D008986 4.3e-130 468.4 307 76.9
Haze_17049 Corylus avellana HOM05D007136 ORTHO05D008986 5.6e-130 468.0 321 75.1
TAR633G2090 Trochodendron aralioides HOM05D000330 ORTHO05D008986 1.6e-129 466.5 310 72.9
CiPaw.01G285300 Carya illinoinensis HOM05D007136 ORTHO05D008986 1.4e-128 463.4 308 75.6
Atru.chr12.484 Acer truncatum HOM05D007136 ORTHO05D008986 3.1e-128 462.2 307 75.9
Ciclev10032197m.g Citrus clementina HOM05D007136 ORTHO05D008986 2.6e-127 459.1 307 72.0
Dinv26003 Davidia involucrata HOM05D007136 ORTHO05D008986 4.5e-127 458.4 310 73.5
Nn2g10391 Nelumbo nucifera HOM05D007136 ORTHO05D008986 2.9e-126 455.7 307 71.7
RcHm_v2.0_Chr1g0366511 Rosa chinensis HOM05D007136 ORTHO05D008986 6.4e-126 454.5 307 72.3
TWI15G0021 Tripterygium wilfordii HOM05D007136 ORTHO05D008986 1.4e-125 453.4 305 73.4
CANSAT56G3368 Cannabis sativa HOM05D007136 ORTHO05D008986 7.1e-125 451.1 307 73.0
Prupe.2G233400 Prunus persica HOM05D007136 ORTHO05D008986 9.3e-125 450.7 307 72.3
Potri.010G205900 Populus trichocarpa HOM05D007136 ORTHO05D008986 2.1e-124 449.5 308 72.4
Hma1.2p1_0683F.1_g202870 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 1.8e-123 446.4 305 71.8
FvH4_7g22120 Fragaria vesca HOM05D007136 ORTHO05D008986 8.7e-123 444.1 307 70.4
FAN01G1261 Fragaria x ananassa HOM05D007136 ORTHO05D008986 1.5e-122 443.4 307 70.4
FAN06G2040 Fragaria x ananassa HOM05D007136 ORTHO05D008986 1.9e-122 443.0 307 70.0
Rhsim09G0165500 Rhododendron simsii HOM05D007136 ORTHO05D008986 3.3e-122 442.2 310 70.0
FAN01G1850 Fragaria x ananassa HOM05D007136 ORTHO05D008986 2.8e-121 439.1 307 69.7
FAN06G2061 Fragaria x ananassa HOM05D007136 ORTHO05D008986 4.8e-121 438.3 307 69.4
MD07G1196400 Malus domestica HOM05D007136 ORTHO05D008986 8.1e-121 437.6 307 68.7
Glyma.18G289500 Glycine max HOM05D007136 ORTHO05D008986 2.4e-120 436.0 304 69.1
vmacro10240 Vaccinium macrocarpon HOM05D007136 ORTHO05D008986 1.2e-119 433.7 308 70.1
arahy.Tifrunner.gnm1.ann1.IQ4HGL Arachis hypogaea HOM05D007136 ORTHO05D008986 5.8e-119 431.4 312 68.6
arahy.Tifrunner.gnm1.ann1.RSMT0C Arachis hypogaea HOM05D007136 ORTHO05D008986 5.8e-119 431.4 312 68.6
Ca_07254_v3 Cicer arietinum L. HOM05D007136 ORTHO05D008986 7.6e-119 431.0 306 68.6
Cc02_g07990 Coffea canephora HOM05D007136 ORTHO05D008986 2.2e-118 429.5 308 67.5
PGR044G0021 Punica granatum HOM05D007136 ORTHO05D008986 3.8e-118 428.7 307 68.7
QL08p059192 Quercus lobata HOM05D007136 ORTHO05D008986 6.4e-118 427.9 430 55.8
FAN03G0232 Fragaria x ananassa HOM05D007136 ORTHO05D008986 1.4e-117 426.8 307 68.1
Cfa001492 Carpinus fangiana HOM05D007136 ORTHO05D008986 5.5e-117 424.9 273 78.0
Lj1g0011729 Lotus japonicus HOM05D007136 ORTHO05D008986 5.5e-117 424.9 304 68.4
VMungo1383G1564 Vigna mungo HOM05D007136 ORTHO05D008986 7.9e-116 421.0 306 66.0
Sabra10G0159100 Salix brachista HOM05D007136 ORTHO05D008986 1.0e-115 420.6 354 62.7
Psat3g181320 Pisum sativum HOM05D007136 ORTHO05D008986 1.3e-115 420.2 306 67.0
Actinidia29223 Actinidia chinensis HOM05D007136 ORTHO05D008986 3.9e-115 418.7 310 67.4
Medtr7g024560 Medicago truncatula HOM05D007136 ORTHO05D008986 6.7e-115 417.9 306 66.3
Phvul.008G012700 Phaseolus vulgaris HOM05D007136 ORTHO05D008986 6.7e-115 417.9 306 66.7
Lalb_Chr10g0091721 Lupinus albus HOM05D007136 ORTHO05D008986 1.6e-113 413.3 304 66.1
AUR62038352 Chenopodium quinoa HOM05D007136 ORTHO05D008986 8.2e-113 411.0 307 65.5
Migut.F01500 Erythranthe guttata HOM05D007136 ORTHO05D008986 8.2e-113 411.0 308 63.6
TPR.G15525 Trifolium pratense HOM05D007136 ORTHO05D008986 4.5e-111 405.2 306 65.4
ClCG09G019950 Citrullus lanatus HOM05D007136 ORTHO05D008986 1.3e-110 403.7 310 63.2
MSTRG.8246 Avicennia marina HOM05D007136 ORTHO05D008986 2.2e-110 402.9 308 62.7
DCAR_027635 Daucus carota HOM05D007136 ORTHO05D008986 8.4e-110 401.0 308 63.3
Peaxi162Scf00658g00728 Petunia axillaris HOM05D007136 ORTHO05D008986 1.6e-108 396.7 302 65.2
Ah.16g107010 Amaranthus hybridus HOM05D007136 ORTHO05D008986 4.6e-108 395.2 308 62.0
Nitab4.5_0000931g0010 Nicotiana tabacum HOM05D007136 ORTHO05D008986 7.9e-108 394.4 303 62.0
Hund20032 Selenicereus undatus HOM05D007136 ORTHO05D008986 2.3e-107 392.9 345 58.6
Sopen06g013560 Solanum pennellii HOM05D007136 ORTHO05D008986 1.5e-106 390.2 303 60.7
Sed0006263 Sechium edule HOM05D007136 ORTHO05D008986 4.3e-106 388.7 307 59.6
ECA238G4577 Erigeron canadensis HOM05D007136 ORTHO05D008986 5.7e-106 388.3 311 61.1
Lsat_1_v5_gn_2_119701 Lactuca sativa HOM05D007136 ORTHO05D008986 1.6e-105 386.7 309 61.5
SalBow6G2062 Salvia bowleyana HOM05D007136 ORTHO05D008986 1.1e-104 384.0 303 60.7
CsaV3_5G026510 Cucumis sativus L. HOM05D007136 ORTHO05D008986 1.5e-103 380.2 306 59.5
SGA_v2.0_scaffold86G26943 Striga asiatica HOM05D007136 ORTHO05D008986 1.5e-103 380.2 303 59.4
Aqoxy2G02097 Aquilegia oxysepala HOM05D007136 ORTHO05D008986 4.5e-103 378.6 306 57.5
MELO3C021650.2 Cucumis melo HOM05D007136 ORTHO05D008986 1.3e-102 377.1 306 58.2
HanXRQChr14g0458151 Helianthus annuus HOM05D007136 ORTHO05D008986 1.3e-102 377.1 309 60.2
EL10Ac2g03388 Beta vulgaris HOM05D007136 ORTHO05D008986 3.8e-102 375.6 361 55.1
THA.LOC104799346 Tarenaya hassleriana HOM05D007136 ORTHO05D008986 1.1e-101 374.0 310 61.3
Nitab4.5_0000065g0080 Nicotiana tabacum HOM05D007136 ORTHO05D008986 2.5e-101 372.9 308 59.7
Aa31LG5G14590 Aethionema arabicum HOM05D007136 ORTHO05D008986 2.5e-98 362.8 315 57.8
Sp3g03000 Schrenkiella parvula HOM05D007136 ORTHO05D008986 3.3e-98 362.5 309 57.9
BraA05t23073Z Brassica rapa HOM05D007136 ORTHO05D008986 9.7e-98 360.9 310 57.4
ATR0559G284 Amborella trichopoda HOM05D007136 ORTHO05D008986 1.8e-96 356.7 294 58.2
C05p63040 Brassica napus HOM05D007136 ORTHO05D008986 3.1e-96 355.9 309 56.6
BolC5t34957H Brassica oleracea HOM05D007136 ORTHO05D008986 3.1e-96 355.9 309 56.6
Thhalv10021212m.g Eutrema salsugineum HOM05D007136 ORTHO05D008986 2.9e-94 349.4 309 56.0
CARHR078150 Cardamine hirsuta HOM05D007136 ORTHO05D008986 5.0e-94 348.6 310 54.8
HPP92_001682 Vanilla planifolia HOM05D007136 ORTHO05D008986 6.5e-94 348.2 311 58.2
Carub.0003s0327 Capsella rubella HOM05D007136 ORTHO05D008986 3.2e-93 345.9 310 54.8
A05p43340 Brassica napus HOM05D007136 ORTHO05D008986 1.2e-92 344.0 294 56.8
PSO339G3352 Papaver somniferum HOM05D007136 ORTHO05D008986 1.2e-92 344.0 305 55.1
Manes.07G114900 Manihot esculenta HOM05D007136 ORTHO05D008986 2.1e-92 343.2 238 71.4
Eucgr.J00020 Eucalyptus grandis HOM05D007136 ORTHO05D008986 7.9e-92 341.3 238 68.1
AL3G13930 Arabidopsis lyrata HOM05D007136 ORTHO05D008986 2.3e-91 339.7 310 54.2
MBI05_g22899_MAGBIO Magnolia biondii HOM05D007136 ORTHO05D008986 5.1e-91 338.6 298 58.7
BcaC05g30543 Brassica carinata HOM05D007136 ORTHO05D008986 2.6e-90 336.3 293 57.3
PSO151G0201 Papaver somniferum HOM05D007136 ORTHO05D008986 2.6e-90 336.3 305 52.8
Os03g0276600 Oryza sativa ssp. japonica HOM05D007136 ORTHO05D008986 4.8e-89 332.0 304 53.3
Cpa.g.sc1.397 Carica papaya HOM05D007136 ORTHO05D008986 1.4e-88 330.5 243 68.7
Hma1.2p1_0683F.1_g202860 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 9.1e-88 327.8 250 67.2
CSS0027543 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 2.6e-87 326.2 268 63.1
CSS0005502 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 5.9e-87 325.1 268 62.7
Duzib106G1934 Durio zibethinus HOM05D007136 ORTHO05D008986 8.0e-84 314.7 176 89.2
Sc09g0007080 Simmondsia chinensis HOM05D007136 ORTHO05D008986 2.3e-83 313.2 222 66.7
CDE09G1315 Ceratophyllum demersum HOM05D007136 ORTHO05D008986 2.0e-82 310.1 310 51.0
unitig_736.g22315 Utricularia gibba HOM05D007136 ORTHO05D008986 2.0e-79 300.1 325 50.5
Lj4C909G7 Lonicera japonica HOM05D007136 ORTHO05D008986 1.8e-75 287.0 221 67.0
SEGI_31981 Sequoiadendron giganteum HOM05D007136 ORTHO05D008986 6.3e-73 278.5 294 47.6
Zm00001eb012480 Zea mays HOM05D007136 ORTHO05D008986 6.3e-73 278.5 305 47.9
Solyc06g043070.4 Solanum lycopersicum HOM05D007136 ORTHO05D008986 1.4e-72 277.3 238 55.9
Dinv31448 Davidia involucrata HOM05D007136 ORTHO05D008986 2.2e-70 270.0 244 57.4
AT3G04020 Arabidopsis thaliana HOM05D007136 ORTHO05D008986 1.5e-66 257.3 242 52.5
Glyma.02G092900 Glycine max HOM05D007136 ORTHO05D008986 2.6e-58 229.9 240 52.5
Pp3c12_11030 Physcomitrium patens HOM05D007136 ORTHO05D008986 2.8e-52 209.9 293 39.6
AUR62041862 Chenopodium quinoa HOM05D007136 ORTHO05D008986 5.2e-43 179.1 112 72.3
Mapoly0002s0030 Marchantia polymorpha HOM05D007136 ORTHO05D008986 7.3e-37 158.7 281 29.5
AUR62041861 Chenopodium quinoa HOM05D007136 ORTHO05D008986 2.6e-34 150.2 113 63.7
CAN.G1401.1 Capsicum annuum HOM05D007136 ORTHO05D008986 4.1e-24 116.3 68 72.1
CSS0002221 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 1.6e-23 114.4 68 77.9
CSS0010171 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 4.6e-23 112.8 68 76.5
Solyc06g043060.1 Solanum lycopersicum HOM05D007136 ORTHO05D008986 3.0e-22 110.2 63 74.6
FAN10G3057 Fragaria x ananassa HOM05D007136 ORTHO05D025577 1.1e-21 108.2 62 75.8
SHI07863 Sapria himalayana HOM05D007136 ORTHO05D008986 4.8e-12 76.3 63 57.1


User provided reference genes

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