Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G043200 Theobroma cacao HOM05D007860 ORTHO05D009950 2.2e-28 128.3 64 100.0
Gohir.A07G000500 Gossypium hirsutum HOM05D007860 ORTHO05D009950 1.6e-23 112.1 61 90.2
Gohir.D04G062700 Gossypium hirsutum HOM05D007860 ORTHO05D009950 2.1e-23 111.7 61 88.5
Gorai.012G070100 Gossypium raimondii HOM05D007860 ORTHO05D009950 2.1e-23 111.7 61 88.5
Gohir.A05G349600 Gossypium hirsutum HOM05D007860 ORTHO05D009950 3.0e-22 107.8 61 85.2
Cfa009596 Carpinus fangiana HOM05D007860 ORTHO05D009950 8.9e-22 106.3 62 80.6
COL.COLO4_15031 Corchorus olitorius HOM05D007860 ORTHO05D009950 8.9e-22 106.3 66 81.8
Glyma.18G290700 Glycine max HOM05D007860 ORTHO05D009950 2.2e-20 101.7 62 75.8
TWI63G0334 Tripterygium wilfordii HOM05D007860 ORTHO05D009950 8.3e-20 99.8 64 76.6
CiPaw.01G286200 Carya illinoinensis HOM05D007860 ORTHO05D009950 1.1e-19 99.4 62 74.2
Glyma.02G092000 Glycine max HOM05D007860 ORTHO05D009950 1.1e-19 99.4 62 74.2
Sabra10G0157800 Salix brachista HOM05D007860 ORTHO05D009950 1.1e-19 99.4 64 75.0
Manes.09G185000 Manihot esculenta HOM05D007860 ORTHO05D009950 1.4e-19 99.0 64 73.4
Lj1g0016082 Lotus japonicus HOM05D007860 ORTHO05D009950 2.4e-19 98.2 60 78.3
CiPaw.01G285600 Carya illinoinensis HOM05D007860 ORTHO05D009950 3.2e-19 97.8 62 74.2
Phvul.008G011200 Phaseolus vulgaris HOM05D007860 ORTHO05D009950 3.2e-19 97.8 64 73.4
RcHm_v2.0_Chr4g0445811 Rosa chinensis HOM05D007860 ORTHO05D009950 4.1e-19 97.4 64 75.0
TPR.G1333 Trifolium pratense HOM05D007860 ORTHO05D009950 9.2e-19 96.3 62 72.6
Peaxi162Scf00760g00224 Petunia axillaris HOM05D007860 ORTHO05D009950 2.0e-18 95.1 60 75.0
Potri.010G204200 Populus trichocarpa HOM05D007860 ORTHO05D009950 2.0e-18 95.1 64 73.4
Cc00_g31060 Coffea canephora HOM05D007860 ORTHO05D009950 2.7e-18 94.7 64 70.3
Medtr7g026210 Medicago truncatula HOM05D007860 ORTHO05D009950 2.7e-18 94.7 62 74.2
Prupe.1G341800 Prunus persica HOM05D007860 ORTHO05D009950 4.6e-18 94.0 63 73.0
Solyc04g150108.1 Solanum lycopersicum HOM05D007860 ORTHO05D009950 5.9e-18 93.6 62 69.4
PGSC0003DMG400027747 Solanum tuberosum HOM05D007860 ORTHO05D009950 5.9e-18 93.6 62 69.4
CDE08G0617 Ceratophyllum demersum HOM05D007860 ORTHO05D009950 7.8e-18 93.2 53 77.4
Cc02_g07910 Coffea canephora HOM05D007860 ORTHO05D009950 7.8e-18 93.2 64 68.8
SalBow8G2293 Salvia bowleyana HOM05D007860 ORTHO05D009950 7.8e-18 93.2 58 72.4
Nn4g22694 Nelumbo nucifera HOM05D007860 ORTHO05D009950 1.0e-17 92.8 59 74.6
Hund16092 Selenicereus undatus HOM05D007860 ORTHO05D009950 3.9e-17 90.9 62 74.2
Aqoxy4G02946 Aquilegia oxysepala HOM05D007860 ORTHO05D009950 8.6e-17 89.7 58 74.1
Migut.E01407 Erythranthe guttata HOM05D007860 ORTHO05D009950 1.1e-16 89.4 60 71.7
Migut.E01421 Erythranthe guttata HOM05D007860 ORTHO05D009950 1.1e-16 89.4 60 71.7
THA.LOC104817766 Tarenaya hassleriana HOM05D007860 ORTHO05D009950 1.1e-16 89.4 64 70.3
CAN.G786.12 Capsicum annuum HOM05D007860 ORTHO05D009950 3.3e-16 87.8 62 62.9
HanXRQChr08g0220681 Helianthus annuus HOM05D007860 ORTHO05D009950 3.3e-16 87.8 59 72.9
Lalb_Chr11g0073451 Lupinus albus HOM05D007860 ORTHO05D009950 4.3e-16 87.4 56 69.6
vmacro04194 Vaccinium macrocarpon HOM05D007860 ORTHO05D009950 9.5e-16 86.3 62 64.5
Sed0021911 Sechium edule HOM05D007860 ORTHO05D009950 1.2e-15 85.9 59 67.8
DCAR_011692 Daucus carota HOM05D007860 ORTHO05D009950 1.6e-15 85.5 60 71.7
Lalb_Chr10g0091671 Lupinus albus HOM05D007860 ORTHO05D009950 1.6e-15 85.5 64 67.2
unitig_747.g21379 Utricularia gibba HOM05D007860 ORTHO05D009950 1.6e-15 85.5 49 75.5
Lsat_1_v5_gn_8_15760 Lactuca sativa HOM05D007860 ORTHO05D009950 2.1e-15 85.1 59 71.2
AT4G26055 Arabidopsis thaliana HOM05D007860 ORTHO05D009950 2.8e-15 84.7 62 67.7
MBI05_g22876_MAGBIO Magnolia biondii HOM05D007860 ORTHO05D009950 4.7e-15 84.0 57 71.9
Aa31LG3G410 Aethionema arabicum HOM05D007860 ORTHO05D009950 8.0e-15 83.2 64 65.6
VMungo1383G1282 Vigna mungo HOM05D007860 ORTHO05D009950 1.0e-14 82.8 45 82.2
MELO3C033702.2 Cucumis melo HOM05D007860 ORTHO05D009950 1.4e-14 82.4 59 62.7
HPP92_012590 Vanilla planifolia HOM05D007860 ORTHO05D009950 1.8e-14 82.0 56 67.9
Ciclev10033443m.g Citrus clementina HOM05D007860 ORTHO05D009950 2.3e-14 81.6 89 56.2
Oeu017367.1 Olea europaea HOM05D007860 ORTHO05D009950 2.3e-14 81.6 47 83.0
AL7G26930 Arabidopsis lyrata HOM05D007860 ORTHO05D009950 4.0e-14 80.9 62 67.7
CSS0034636 Camellia sinensis var. sinensis HOM05D007860 ORTHO05D009950 8.9e-14 79.7 43 79.1
CsaV3_5G026630 Cucumis sativus L. HOM05D007860 ORTHO05D009950 1.2e-13 79.3 58 62.1
Nn3g16785 Nelumbo nucifera HOM05D007860 ORTHO05D009950 1.2e-13 79.3 63 60.3
Psat3g182840 Pisum sativum HOM05D007860 ORTHO05D009950 1.2e-13 79.3 43 83.7
SpUn0576_0010 Schrenkiella parvula HOM05D007860 ORTHO05D009950 2.0e-13 78.6 65 69.2
Sc10g0001510 Simmondsia chinensis HOM05D007860 ORTHO05D009950 2.6e-13 78.2 43 79.1
Thhalv10026736m.g Eutrema salsugineum HOM05D007860 ORTHO05D009950 9.8e-13 76.3 57 71.9
CARHR233560 Cardamine hirsuta HOM05D007860 ORTHO05D009950 1.3e-12 75.9 62 64.5
Zm00001eb205410 Zea mays HOM05D007860 ORTHO05D009950 1.3e-12 75.9 47 66.0
BcaC07g38219 Brassica carinata HOM05D007860 ORTHO05D009950 1.7e-12 75.5 64 62.5
A08p20930 Brassica napus HOM05D007860 ORTHO05D009950 1.7e-12 75.5 64 62.5
C08p09770 Brassica napus HOM05D002589 ORTHO05D002742 1.7e-12 75.5 64 62.5
BolC8t48648H Brassica oleracea HOM05D002589 ORTHO05D002742 1.7e-12 75.5 64 62.5
BraA08t34046Z Brassica rapa HOM05D007860 ORTHO05D009950 1.7e-12 75.5 64 62.5
PSO170G0009 Papaver somniferum HOM05D007860 ORTHO05D009950 1.7e-12 75.5 54 70.4
A03p56460 Brassica napus HOM05D002589 ORTHO05D002742 2.2e-12 75.1 64 60.9
BraA03t14716Z Brassica rapa HOM05D007860 ORTHO05D009950 2.2e-12 75.1 64 60.9
arahy.Tifrunner.gnm1.ann1.WKZY2Y Arachis hypogaea HOM05D007860 ORTHO05D009950 3.7e-12 74.3 42 73.8
FAN22G0325 Fragaria x ananassa HOM05D007860 ORTHO05D009950 4.9e-12 73.9 66 57.6
Actinidia13876 Actinidia chinensis HOM05D007860 ORTHO05D009950 6.4e-12 73.6 45 68.9
Carub.0007s1490 Capsella rubella HOM05D007860 ORTHO05D009950 8.3e-12 73.2 59 64.4
MD16G1008700 Malus domestica HOM05D007860 ORTHO05D009950 8.3e-12 73.2 43 76.7
Sp6g18800 Schrenkiella parvula HOM05D007860 ORTHO05D009950 8.3e-12 73.2 50 72.0
AT5G57080 Arabidopsis thaliana HOM05D007860 ORTHO05D009950 1.9e-11 72.0 54 66.7
C07p54670 Brassica napus HOM05D007860 ORTHO05D009950 1.9e-11 72.0 64 59.4
BolC7t45956H Brassica oleracea HOM05D007860 ORTHO05D009950 1.9e-11 72.0 64 59.4
BraA03t10609Z Brassica rapa HOM05D007860 ORTHO05D009950 1.9e-11 72.0 59 62.7
ClCG09G019790 Citrullus lanatus HOM05D007860 ORTHO05D009950 5.4e-11 70.5 44 72.7
BcaB01g04442 Brassica carinata HOM05D007860 ORTHO05D009950 1.2e-10 69.3 54 64.8
SEGI_33557 Sequoiadendron giganteum HOM05D007860 ORTHO05D009950 1.6e-10 68.9 62 59.7
EL10Ac2g04657 Beta vulgaris HOM05D007860 ORTHO05D009950 3.9e-09 64.3 48 58.3
BcaNung07291 Brassica carinata HOM05D007860 ORTHO05D009950 5.0e-09 63.9 54 63.0
RcHm_v2.0_Chr4g0445941 Rosa chinensis HOM05D007860 ORTHO05D009950 1.8e-06 55.5 45 71.1


User provided reference genes

Program Settings