Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 3.8e-120 434.9 223 100.0
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 6.3e-107 391.0 225 91.1
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 5.3e-106 387.9 209 91.9
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 1.1e-103 380.2 225 85.3
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 2.5e-103 379.0 225 85.8
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 3.2e-103 378.6 225 84.9
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 1.2e-102 376.7 226 82.7
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 1.0e-101 373.6 229 83.4
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.4e-101 373.2 225 85.3
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 3.9e-101 371.7 235 82.1
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 1.5e-100 369.8 210 88.1
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.5e-100 369.8 226 86.3
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 5.7e-100 367.9 233 80.7
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 7.4e-100 367.5 226 85.8
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 1.7e-99 366.3 227 82.8
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.7e-99 366.3 223 80.7
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 2.8e-99 365.5 225 80.4
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.8e-99 365.5 220 85.0
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.8e-99 365.5 220 85.0
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.8e-99 365.5 226 85.4
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 2.8e-99 365.5 220 85.0
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 3.7e-99 365.2 234 79.9
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 3.7e-99 365.2 226 85.8
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 8.2e-99 364.0 201 87.1
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 1.1e-98 363.6 211 84.8
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 5.3e-98 361.3 226 85.0
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 1.2e-97 360.1 209 87.6
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 4.5e-97 358.2 230 82.2
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 7.7e-97 357.5 209 82.8
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 1.0e-96 357.1 228 80.7
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.3e-96 356.7 228 80.7
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 1.3e-96 356.7 228 82.0
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 1.7e-96 356.3 211 84.4
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 2.2e-96 355.9 207 83.6
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.9e-96 355.5 228 80.3
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.9e-96 355.5 228 80.3
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 2.9e-96 355.5 229 78.6
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 5.0e-96 354.8 228 80.3
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 6.5e-96 354.4 228 80.3
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.1e-95 353.6 225 80.4
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 1.5e-95 353.2 225 82.7
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 2.5e-95 352.4 215 82.8
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 2.5e-95 352.4 199 86.4
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 7.2e-95 350.9 231 81.4
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 7.2e-95 350.9 231 81.4
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.2e-94 350.1 208 82.2
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 1.6e-94 349.7 209 79.9
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 2.7e-94 349.0 209 80.9
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 4.7e-94 348.2 227 78.4
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 1.0e-93 347.1 214 81.8
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 1.8e-93 346.3 234 80.8
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 2.3e-93 345.9 213 77.9
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 6.7e-93 344.4 234 78.6
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 2.0e-92 342.8 223 78.9
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 9.7e-92 340.5 211 82.0
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 9.7e-92 340.5 211 82.0
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 4.8e-91 338.2 227 79.3
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.8e-90 336.3 211 79.1
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 1.2e-89 333.6 233 76.8
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 2.0e-89 332.8 230 76.1
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 5.9e-89 331.3 210 78.6
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 5.9e-89 331.3 209 79.4
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 1.0e-88 330.5 212 78.8
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 1.7e-88 329.7 208 78.4
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 2.9e-88 328.9 207 79.2
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 3.8e-88 328.6 213 78.4
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 5.0e-88 328.2 229 75.1
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 1.1e-87 327.0 206 77.2
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 1.5e-87 326.6 212 76.4
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 7.2e-87 324.3 197 78.7
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 1.6e-86 323.2 197 78.7
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 1.6e-86 323.2 200 78.0
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 3.6e-86 322.0 224 76.8
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 4.7e-86 321.6 211 76.3
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 4.7e-86 321.6 197 80.2
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 1.0e-85 320.5 222 73.0
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.4e-85 320.1 236 71.2
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 4.0e-85 318.5 208 77.9
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 5.2e-85 318.2 200 80.0
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 1.3e-83 313.5 200 75.0
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 1.3e-83 313.5 229 68.1
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 3.7e-83 312.0 226 71.2
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 6.3e-83 311.2 213 76.5
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 9.1e-82 307.4 227 68.3
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 2.7e-81 305.8 193 77.2
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 5.9e-81 304.7 204 75.5
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 1.9e-79 299.7 223 69.1
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 9.4e-79 297.4 203 72.4
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 1.2e-78 297.0 194 78.9
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 4.7e-78 295.0 194 78.4
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 6.1e-78 294.7 225 66.7
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 5.2e-77 291.6 211 68.2
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 2.0e-76 289.7 229 68.1
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 2.0e-76 289.7 227 66.1
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 3.4e-76 288.9 218 69.3
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 3.4e-76 288.9 221 67.9
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 4.4e-76 288.5 229 68.6
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 7.5e-76 287.7 192 72.9
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 1.3e-75 287.0 229 69.9
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 8.3e-75 284.3 229 69.4
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 8.3e-75 284.3 204 71.6
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 1.8e-74 283.1 204 71.1
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 3.1e-74 282.3 207 70.0
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 3.1e-74 282.3 207 70.0
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 5.4e-74 281.6 229 65.5
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 9.2e-74 280.8 207 70.0
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 2.0e-73 279.6 207 69.1
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 2.7e-73 279.3 229 65.9
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 2.7e-73 279.3 207 69.1
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 2.7e-73 279.3 229 65.9
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 2.7e-73 279.3 229 65.9
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 4.5e-73 278.5 207 69.1
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 4.5e-73 278.5 204 71.6
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 5.9e-73 278.1 229 65.1
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 5.0e-72 275.0 208 67.8
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 8.6e-72 274.2 228 68.0
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 1.9e-71 273.1 214 66.4
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 3.3e-71 272.3 206 66.0
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 5.6e-71 271.6 193 72.5
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 8.0e-70 267.7 215 67.4
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 2.3e-69 266.2 200 65.5
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 6.8e-69 264.6 196 68.4
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 9.8e-68 260.8 194 66.0
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 1.7e-67 260.0 204 63.7
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 1.6e-65 253.4 142 84.5
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 1.1e-63 247.3 201 63.7
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 2.9e-59 232.6 189 69.8
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 9.2e-58 227.6 189 69.3
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 6.0e-57 224.9 186 58.6
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 1.5e-55 220.3 217 55.8
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 1.9e-55 219.9 120 90.8
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 8.1e-54 214.5 163 66.3
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 1.5e-47 193.7 120 72.5
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 6.2e-46 188.3 202 53.5
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 5.2e-45 185.3 139 74.1
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 1.5e-44 183.7 101 84.2
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 7.6e-44 181.4 104 82.7
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 1.3e-43 180.6 108 74.1
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 9.9e-20 101.3 62 77.4
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 6.4e-19 98.6 93 55.9
Mapoly0062s0070 Marchantia polymorpha HOM05D005580 ORTHO05D006395 3.9e-08 62.8 149 28.9
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 7.4e-07 58.5 160 26.9
AagrBONN_evm.TU.Sc2ySwM_117.4181 Anthoceros agrestis HOM05D025074 ORTHO05D006395 1.3e-06 57.8 142 26.8
Pp3c12_3400 Physcomitrium patens HOM05D000906 ORTHO05D000713 4.8e-06 55.8 166 25.3


User provided reference genes

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