Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G033500 Theobroma cacao HOM05D000011 ORTHO05D005387 1.4e-70 269.6 145 100.0
Thecc.10G034000 Theobroma cacao HOM05D000011 ORTHO05D000018 1.1e-24 117.1 68 95.6
Thecc.10G033800 Theobroma cacao HOM05D000011 ORTHO05D000018 7.9e-18 94.4 69 82.6
Thecc.10G033900 Theobroma cacao HOM05D000011 ORTHO05D000018 4.3e-16 88.6 65 80.0
Thecc.10G034100 Theobroma cacao HOM05D000011 ORTHO05D000018 1.3e-15 87.0 89 60.7
Thecc.10G027800 Theobroma cacao HOM05D000011 ORTHO05D000018 3.1e-14 82.4 68 70.6
Thecc.10G033300 Theobroma cacao HOM05D000011 ORTHO05D000018 1.5e-13 80.1 68 70.6
Thecc.10G034200 Theobroma cacao HOM05D000011 ORTHO05D000018 1.5e-13 80.1 85 61.2
Thecc.10G028000 Theobroma cacao HOM05D000011 ORTHO05D000018 2.0e-13 79.7 116 44.8
COL.COLO4_25540 Corchorus olitorius HOM05D000011 ORTHO05D000018 2.6e-13 79.3 86 53.5
COL.COLO4_25529 Corchorus olitorius HOM05D000011 ORTHO05D000018 5.9e-13 78.2 68 66.2
Duzib106G1754 Durio zibethinus HOM05D000011 ORTHO05D000018 7.7e-13 77.8 69 72.5
COL.COLO4_36539 Corchorus olitorius HOM05D000011 ORTHO05D000018 1.0e-12 77.4 115 46.1
Gohir.D10G237400 Gossypium hirsutum HOM05D000011 ORTHO05D000018 1.3e-12 77.0 121 44.6
Thecc.10G090400 Theobroma cacao HOM05D000011 ORTHO05D000018 1.3e-12 77.0 68 67.6
COL.COLO4_25733 Corchorus olitorius HOM05D000011 ORTHO05D000018 1.1e-11 73.9 90 51.1
Gorai.011G270000 Gossypium raimondii HOM05D000011 ORTHO05D000018 1.9e-11 73.2 100 48.0
COL.COLO4_25541 Corchorus olitorius HOM05D000011 ORTHO05D000018 2.5e-11 72.8 66 62.1
Gohir.A10G223800 Gossypium hirsutum HOM05D000011 ORTHO05D000018 7.2e-11 71.2 68 61.8
Gohir.D10G237016 Gossypium hirsutum HOM05D000011 ORTHO05D000018 7.2e-11 71.2 100 46.0
Ca_02140_v3 Cicer arietinum L. HOM05D000011 ORTHO05D000018 1.2e-10 70.5 66 56.1
Gohir.A10G224350 Gossypium hirsutum HOM05D000011 ORTHO05D000018 1.2e-10 70.5 121 42.1
Gohir.D10G236608 Gossypium hirsutum HOM05D000011 ORTHO05D000018 2.7e-10 69.3 100 45.0
Gohir.D10G236700 Gossypium hirsutum HOM05D000011 ORTHO05D000018 2.7e-10 69.3 100 45.0
Gorai.011G270100 Gossypium raimondii HOM05D000011 ORTHO05D000018 2.7e-10 69.3 100 45.0
Gorai.011G270400 Gossypium raimondii HOM05D000011 ORTHO05D000018 2.7e-10 69.3 83 51.8
Gohir.D10G236200 Gossypium hirsutum HOM05D000011 ORTHO05D000018 4.6e-10 68.6 100 46.0
Manes.07G121300 Manihot esculenta HOM05D000011 ORTHO05D000018 4.6e-10 68.6 78 52.6
GSVIVG01032827001 Vitis vinifera HOM05D000011 ORTHO05D000018 4.6e-10 68.6 66 54.5
Sabra18G0113600 Salix brachista HOM05D000011 ORTHO05D000018 7.9e-10 67.8 66 57.6
Gohir.D10G236600 Gossypium hirsutum HOM05D000011 ORTHO05D000018 1.0e-09 67.4 83 50.6
Manes.10G025400 Manihot esculenta HOM05D000011 ORTHO05D000018 1.0e-09 67.4 68 60.3
Psat0s283g0280 Pisum sativum HOM05D000011 ORTHO05D000018 1.4e-09 67.0 66 53.0
GSVIVG01032825001 Vitis vinifera HOM05D000011 ORTHO05D000018 1.4e-09 67.0 82 48.8
COL.COLO4_25542 Corchorus olitorius HOM05D000011 ORTHO05D000018 1.8e-09 66.6 78 52.6
Gohir.A10G223701 Gossypium hirsutum HOM05D000011 ORTHO05D000018 1.8e-09 66.6 100 45.0
Manes.10G023200 Manihot esculenta HOM05D000011 ORTHO05D000018 1.8e-09 66.6 82 51.2
Potri.018G138500 Populus trichocarpa HOM05D000011 ORTHO05D000018 1.8e-09 66.6 66 56.1
MD04G1238000 Malus domestica HOM05D000011 ORTHO05D000018 3.0e-09 65.9 66 51.5
COL.COLO4_28073 Corchorus olitorius HOM05D000011 ORTHO05D000018 3.9e-09 65.5 132 38.6
Thecc.10G033700 Theobroma cacao HOM05D000011 ORTHO05D000018 3.9e-09 65.5 71 59.2
Gohir.D10G236800 Gossypium hirsutum HOM05D000011 ORTHO05D000018 6.7e-09 64.7 100 45.0
Gohir.A10G223900 Gossypium hirsutum HOM05D000011 ORTHO05D000018 8.8e-09 64.3 104 44.2
Medtr2g038510 Medicago truncatula HOM05D000011 ORTHO05D000018 1.1e-08 63.9 66 50.0
Gohir.D10G237008 Gossypium hirsutum HOM05D000011 ORTHO05D000018 1.5e-08 63.5 104 44.2
Manes.07G121100 Manihot esculenta HOM05D000011 ORTHO05D000018 2.0e-08 63.2 66 54.5
arahy.Tifrunner.gnm1.ann1.9W4GU5 Arachis hypogaea HOM05D000011 ORTHO05D000018 2.5e-08 62.8 68 52.9
MD12G1256300 Malus domestica HOM05D000011 ORTHO05D000018 2.5e-08 62.8 66 50.0
PGR042G0084 Punica granatum HOM05D000011 ORTHO05D000018 2.5e-08 62.8 66 53.0
GSVIVG01032828001 Vitis vinifera HOM05D000011 ORTHO05D000018 2.5e-08 62.8 66 53.0
Cc04_g13950 Coffea canephora HOM05D000011 ORTHO05D000018 3.3e-08 62.4 66 51.5
Manes.10G023300 Manihot esculenta HOM05D000011 ORTHO05D000018 3.3e-08 62.4 83 43.4
QL05p061062 Quercus lobata HOM05D000011 ORTHO05D000018 4.3e-08 62.0 66 48.5
Lj1g0009587 Lotus japonicus HOM05D000011 ORTHO05D000018 5.7e-08 61.6 68 47.1
Manes.18G105800 Manihot esculenta HOM05D000011 ORTHO05D000018 5.7e-08 61.6 66 53.0
Duzib138G0602 Durio zibethinus HOM05D000011 ORTHO05D000018 7.4e-08 61.2 66 48.5
TAR374G1166 Trochodendron aralioides HOM05D000011 ORTHO05D000018 7.4e-08 61.2 83 49.4
TAR376G1063 Trochodendron aralioides HOM05D000011 ORTHO05D000018 7.4e-08 61.2 82 42.7
VMungo1309G0058 Vigna mungo HOM05D000011 ORTHO05D000018 7.4e-08 61.2 66 48.5
COL.COLO4_15098 Corchorus olitorius HOM05D000011 ORTHO05D000018 9.7e-08 60.8 67 56.7
Lj6g0024234 Lotus japonicus HOM05D000011 ORTHO05D000018 9.7e-08 60.8 66 48.5
Manes.10G022500 Manihot esculenta HOM05D000011 ORTHO05D000018 9.7e-08 60.8 91 39.6
GSVIVG01024100001 Vitis vinifera HOM05D000011 ORTHO05D000018 9.7e-08 60.8 66 51.5
Cc04_g11070 Coffea canephora HOM05D000011 ORTHO05D006231 1.3e-07 60.5 66 53.0
COL.COLO4_19425 Corchorus olitorius HOM05D000011 ORTHO05D000018 1.3e-07 60.5 66 56.1
Lalb_Chr08g0232011 Lupinus albus HOM05D000011 ORTHO05D000018 1.3e-07 60.5 66 50.0
Aqoxy4G02999 Aquilegia oxysepala HOM05D000011 ORTHO05D005387 1.7e-07 60.1 87 39.1
Cc04_g14040 Coffea canephora HOM05D000011 ORTHO05D000018 1.7e-07 60.1 66 51.5
TAR633G0132 Trochodendron aralioides HOM05D000011 ORTHO05D005387 1.7e-07 60.1 117 37.6
GSVIVG01032830001 Vitis vinifera HOM05D000011 ORTHO05D000018 1.7e-07 60.1 66 47.0
Dinv29756 Davidia involucrata HOM05D000011 ORTHO05D000018 2.2e-07 59.7 66 50.0
Cc04_g14020 Coffea canephora HOM05D000011 ORTHO05D000018 2.8e-07 59.3 66 51.5
Dinv29816 Davidia involucrata HOM05D000011 ORTHO05D000018 2.8e-07 59.3 82 42.7
Glyma.15G168500 Glycine max HOM05D000011 ORTHO05D000018 2.8e-07 59.3 66 50.0
PGR042G2359 Punica granatum HOM05D000011 ORTHO05D000018 2.8e-07 59.3 66 48.5
QL05p061342 Quercus lobata HOM05D000011 ORTHO05D000018 2.8e-07 59.3 66 47.0
GSVIVG01024099001 Vitis vinifera HOM05D000011 ORTHO05D000018 2.8e-07 59.3 66 50.0
GSVIVG01032824001 Vitis vinifera HOM05D000011 ORTHO05D000018 2.8e-07 59.3 66 50.0
Haze_14399 Corylus avellana HOM05D000011 ORTHO05D000018 3.7e-07 58.9 66 47.0
MBI14_g43303_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000157 3.7e-07 58.9 66 48.5
MBI15_g43333_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 3.7e-07 58.9 86 40.7
Thecc.04G103200 Theobroma cacao HOM05D000011 ORTHO05D000018 3.7e-07 58.9 66 48.5
TWI79G1339 Tripterygium wilfordii HOM05D000011 ORTHO05D000018 3.7e-07 58.9 101 37.6
Dinv29835 Davidia involucrata HOM05D000011 ORTHO05D000018 4.8e-07 58.5 78 38.5
Phvul.009G233700 Phaseolus vulgaris HOM05D000011 ORTHO05D000018 4.8e-07 58.5 66 48.5
SalBow3G0825 Salvia bowleyana HOM05D000011 ORTHO05D000018 4.8e-07 58.5 69 47.8
Cc00_g10780 Coffea canephora HOM05D000011 ORTHO05D000018 6.3e-07 58.2 66 50.0
Cc00_g31030 Coffea canephora HOM05D000011 ORTHO05D000018 6.3e-07 58.2 66 50.0
Cc04_g11620 Coffea canephora HOM05D000011 ORTHO05D000018 6.3e-07 58.2 66 50.0
Cc04_g14250 Coffea canephora HOM05D000011 ORTHO05D000018 6.3e-07 58.2 66 51.5
Cc06_g22540 Coffea canephora HOM05D000011 ORTHO05D000018 6.3e-07 58.2 66 50.0
DCAR_017046 Daucus carota HOM05D000011 ORTHO05D000018 6.3e-07 58.2 78 41.0
Cpa.g.sc86.20 Carica papaya HOM05D000011 ORTHO05D018864 8.2e-07 57.8 66 45.5
Cc00_g19810 Coffea canephora HOM05D000011 ORTHO05D000018 8.2e-07 57.8 66 50.0
Cc00_g34350 Coffea canephora HOM05D000011 ORTHO05D000018 8.2e-07 57.8 66 50.0
Cc06_g16180 Coffea canephora HOM05D000011 ORTHO05D000018 8.2e-07 57.8 82 43.9
MBI15_g24991_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 8.2e-07 57.8 66 48.5
SalBow1G3001 Salvia bowleyana HOM05D000011 ORTHO05D000018 8.2e-07 57.8 65 50.8
TAR055G0005 Trochodendron aralioides HOM05D000011 ORTHO05D000018 8.2e-07 57.8 82 41.5
Cc00_g09900 Coffea canephora HOM05D000011 ORTHO05D000018 1.1e-06 57.4 66 51.5
Gohir.D11G165000 Gossypium hirsutum HOM05D000011 ORTHO05D000018 1.1e-06 57.4 66 48.5
Gorai.007G175800 Gossypium raimondii HOM05D000011 ORTHO05D000018 1.1e-06 57.4 66 48.5
Hma1.2p1_0385F.1_g141340 Hydrangea macrophylla HOM05D000011 ORTHO05D000018 1.1e-06 57.4 76 43.4
PGR042G3058 Punica granatum HOM05D000011 ORTHO05D000018 1.1e-06 57.4 66 45.5
SalBow3G1546 Salvia bowleyana HOM05D000011 ORTHO05D000018 1.1e-06 57.4 69 44.9
Cfa023504 Carpinus fangiana HOM05D000011 ORTHO05D000018 1.4e-06 57.0 66 45.5
Cc04_g12650 Coffea canephora HOM05D000011 ORTHO05D000018 1.4e-06 57.0 66 48.5
DCAR_004880 Daucus carota HOM05D000011 ORTHO05D000018 1.4e-06 57.0 97 37.1
PSO541G1544 Papaver somniferum HOM05D000011 ORTHO05D000018 1.4e-06 57.0 67 55.2
SalBow1G6772 Salvia bowleyana HOM05D000011 ORTHO05D000018 1.4e-06 57.0 71 43.7
SalBow3G3209 Salvia bowleyana HOM05D000011 ORTHO05D000018 1.4e-06 57.0 71 43.7
SalBow3G3673 Salvia bowleyana HOM05D000011 ORTHO05D000018 1.4e-06 57.0 71 42.3
DCAR_004845 Daucus carota HOM05D000011 ORTHO05D000018 1.8e-06 56.6 84 38.1
Migut.N02073 Erythranthe guttata HOM05D000011 ORTHO05D006231 1.8e-06 56.6 82 40.2
SalBow1G4132 Salvia bowleyana HOM05D000011 ORTHO05D000018 1.8e-06 56.6 65 49.2
SalBow3G0428 Salvia bowleyana HOM05D000011 ORTHO05D000018 1.8e-06 56.6 69 46.4
SalBow3G0481 Salvia bowleyana HOM05D000011 ORTHO05D000018 1.8e-06 56.6 71 43.7
SalBow3G4428 Salvia bowleyana HOM05D000011 ORTHO05D000018 1.8e-06 56.6 69 46.4
Actinidia32801 Actinidia chinensis HOM05D000011 ORTHO05D005387 2.4e-06 56.2 66 48.5
Cc00_g09920 Coffea canephora HOM05D000011 ORTHO05D000018 2.4e-06 56.2 66 48.5
Cc00_g10790 Coffea canephora HOM05D000011 ORTHO05D000018 2.4e-06 56.2 66 48.5
Cc04_g12630 Coffea canephora HOM05D000011 ORTHO05D000018 2.4e-06 56.2 66 47.0
Cc04_g14060 Coffea canephora HOM05D000011 ORTHO05D000018 2.4e-06 56.2 66 50.0
MBI15_g26847_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 2.4e-06 56.2 65 50.8
PSO170G4985 Papaver somniferum HOM05D000011 ORTHO05D000018 2.4e-06 56.2 56 50.0
Cc00_g31100 Coffea canephora HOM05D000011 ORTHO05D000018 3.1e-06 55.8 66 50.0
Cc00_g35060 Coffea canephora HOM05D000011 ORTHO05D000018 3.1e-06 55.8 66 50.0
Cc06_g16160 Coffea canephora HOM05D000011 ORTHO05D000018 3.1e-06 55.8 82 43.9
Cc06_g16200 Coffea canephora HOM05D000011 ORTHO05D000018 3.1e-06 55.8 82 45.1
DCAR_008200 Daucus carota HOM05D000011 ORTHO05D000018 3.1e-06 55.8 68 47.1
Manes.10G022450 Manihot esculenta HOM05D000011 ORTHO05D000018 3.1e-06 55.8 66 48.5
SalBow1G7735 Salvia bowleyana HOM05D000011 ORTHO05D000018 3.1e-06 55.8 71 42.3
SalBow1G8102 Salvia bowleyana HOM05D000011 ORTHO05D000018 3.1e-06 55.8 71 40.8
SalBow1G8193 Salvia bowleyana HOM05D000011 ORTHO05D005387 3.1e-06 55.8 78 39.7
SalBow3G0888 Salvia bowleyana HOM05D000011 ORTHO05D000018 3.1e-06 55.8 71 42.3
CiPaw.01G043600 Carya illinoinensis HOM05D000011 ORTHO05D000018 4.1e-06 55.5 66 43.9
CiPaw.04G053100 Carya illinoinensis HOM05D000011 ORTHO05D000018 4.1e-06 55.5 66 45.5
COL.COLO4_08983 Corchorus olitorius HOM05D000011 ORTHO05D000018 4.1e-06 55.5 66 45.5
FvH4_4g22940 Fragaria vesca HOM05D000011 ORTHO05D000018 4.1e-06 55.5 66 47.0
FAN12G1277 Fragaria x ananassa HOM05D000011 ORTHO05D000018 4.1e-06 55.5 66 47.0
Hma1.2p1_0112F.1_g054350 Hydrangea macrophylla HOM05D000011 ORTHO05D000018 4.1e-06 55.5 82 39.0
RcHm_v2.0_Chr4g0429191 Rosa chinensis HOM05D000011 ORTHO05D000018 4.1e-06 55.5 66 47.0
SalBow1G0868 Salvia bowleyana HOM05D000011 ORTHO05D000018 4.1e-06 55.5 69 46.4
SalBow1G6206 Salvia bowleyana HOM05D008725 ORTHO05D015432 4.1e-06 55.5 71 42.3
CSS0019484 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 5.3e-06 55.1 83 41.0
Dinv27077 Davidia involucrata HOM05D000011 ORTHO05D000018 5.3e-06 55.1 78 38.5
Eucgr.E00733 Eucalyptus grandis HOM05D000011 ORTHO05D000018 5.3e-06 55.1 87 39.1
MBI14_g21556_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000157 5.3e-06 55.1 71 45.1
MBI15_g37120_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 5.3e-06 55.1 134 34.3
SalBow3G4051 Salvia bowleyana HOM05D000011 ORTHO05D000018 5.3e-06 55.1 71 42.3
Actinidia17475 Actinidia chinensis HOM05D000011 ORTHO05D000018 6.9e-06 54.7 124 33.9
Cc00_g02990 Coffea canephora HOM05D000011 ORTHO05D000018 6.9e-06 54.7 66 50.0
DCAR_025337 Daucus carota HOM05D000011 ORTHO05D000018 6.9e-06 54.7 71 42.3
DCAR_025342 Daucus carota HOM05D000011 ORTHO05D000018 6.9e-06 54.7 71 43.7
MBI15_g32218_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 6.9e-06 54.7 80 38.8
SalBow1G0600 Salvia bowleyana HOM05D000011 ORTHO05D000018 6.9e-06 54.7 65 49.2
SalBow1G3100 Salvia bowleyana HOM05D000011 ORTHO05D000018 6.9e-06 54.7 66 48.5
SalBow1G5061 Salvia bowleyana HOM05D000011 ORTHO05D000018 6.9e-06 54.7 66 48.5
SalBow3G2913 Salvia bowleyana HOM05D000011 ORTHO05D005387 6.9e-06 54.7 103 35.9
vmacro11164 Vaccinium macrocarpon HOM05D000011 ORTHO05D000018 6.9e-06 54.7 66 48.5
Migut.F02063 Erythranthe guttata HOM05D000011 ORTHO05D006231 9.1e-06 54.3 82 40.2
MBI14_g16768_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000157 9.1e-06 54.3 66 45.5
SalBow1G0326 Salvia bowleyana HOM05D000011 ORTHO05D000018 9.1e-06 54.3 65 49.2
TAR629G0257 Trochodendron aralioides HOM05D000011 ORTHO05D005387 9.1e-06 54.3 66 51.5


User provided reference genes

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