Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G027500 Theobroma cacao HOM05D006228 ORTHO05D007847 6.8e-243 843.6 426 100.0
COL.COLO4_25614 Corchorus olitorius HOM05D006228 ORTHO05D007847 6.4e-201 704.1 426 82.6
Gorai.010G199300 Gossypium raimondii HOM05D006228 ORTHO05D007847 9.3e-192 673.7 404 83.2
Gohir.D06G170400 Gossypium hirsutum HOM05D006228 ORTHO05D007847 2.7e-191 672.2 404 82.9
Gohir.A06G164900 Gossypium hirsutum HOM05D006228 ORTHO05D007847 3.9e-190 668.3 404 82.4
Duzib106G2031 Durio zibethinus HOM05D006228 ORTHO05D007847 1.8e-182 642.9 415 79.3
Potri.008G063500 Populus trichocarpa HOM05D006228 ORTHO05D007847 1.8e-155 553.1 448 63.6
Manes.10G018500 Manihot esculenta HOM05D006228 ORTHO05D007847 1.3e-153 547.0 435 64.6
RcHm_v2.0_Chr1g0369221 Rosa chinensis HOM05D006228 ORTHO05D007847 2.2e-153 546.2 413 65.6
Haze_17175 Corylus avellana HOM05D006228 ORTHO05D007847 2.9e-153 545.8 454 62.1
TWI09G0225 Tripterygium wilfordii HOM05D006228 ORTHO05D007847 1.1e-152 543.9 431 64.3
Dinv34431 Davidia involucrata HOM05D006228 ORTHO05D007847 9.4e-152 540.8 434 63.4
Prupe.2G245100 Prunus persica HOM05D006228 ORTHO05D007847 1.5e-149 533.5 437 62.0
Actinidia13913 Actinidia chinensis HOM05D006228 ORTHO05D007847 3.3e-149 532.3 429 62.5
CSS0000174 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 3.3e-149 532.3 434 63.6
CSS0026214 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 3.3e-149 532.3 434 63.6
Rhsim09G0171700 Rhododendron simsii HOM05D006228 ORTHO05D007847 4.8e-148 528.5 453 60.7
Cfa005508 Carpinus fangiana HOM05D006228 ORTHO05D007847 5.3e-147 525.0 436 62.6
CiPaw.01G295100 Carya illinoinensis HOM05D006228 ORTHO05D007847 1.5e-146 523.5 438 61.0
TAR633G1830 Trochodendron aralioides HOM05D006228 ORTHO05D007847 2.2e-145 519.6 438 59.6
MD07G1212900 Malus domestica HOM05D006228 ORTHO05D007847 8.5e-145 517.7 428 61.4
GSVIVG01016380001 Vitis vinifera HOM05D006228 ORTHO05D007847 8.5e-145 517.7 433 60.5
THA.LOC104810050 Tarenaya hassleriana HOM05D006228 ORTHO05D007847 1.2e-143 513.8 424 60.8
FAN03G1418 Fragaria x ananassa HOM05D006228 ORTHO05D007847 2.7e-143 512.7 403 63.0
FAN01G0169 Fragaria x ananassa HOM05D006228 ORTHO05D007847 8.0e-143 511.1 420 61.7
FAN06G4757 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.0e-142 510.8 412 62.6
Solyc06g009690.3 Solanum lycopersicum HOM05D006228 ORTHO05D007847 3.0e-142 509.2 412 61.4
PGSC0003DMG400007303 Solanum tuberosum HOM05D006228 ORTHO05D007847 6.7e-142 508.1 412 61.9
Sopen06g004350 Solanum pennellii HOM05D006228 ORTHO05D007847 2.0e-141 506.5 414 60.9
CsaV3_5G008840 Cucumis sativus L. HOM05D006228 ORTHO05D007847 3.3e-141 505.8 432 60.2
FvH4_7g23870 Fragaria vesca HOM05D006228 ORTHO05D007847 4.4e-141 505.4 414 61.8
MBI14_g08147_MAGBIO Magnolia biondii HOM05D006228 ORTHO05D007847 1.4e-139 500.4 427 59.7
TPR.G29810 Trifolium pratense HOM05D006228 ORTHO05D007847 1.8e-139 500.0 413 60.8
Aa31LG5G19710 Aethionema arabicum HOM05D006228 ORTHO05D007847 3.1e-139 499.2 431 58.5
Medtr3g070010 Medicago truncatula HOM05D006228 ORTHO05D007847 9.1e-139 497.7 432 58.8
C03p26500 Brassica napus HOM05D006228 ORTHO05D007847 2.0e-138 496.5 411 59.9
Nitab4.5_0012179g0020 Nicotiana tabacum HOM05D006228 ORTHO05D007847 2.6e-138 496.1 457 57.8
Glyma.18G031000 Glycine max HOM05D006228 ORTHO05D007847 4.5e-138 495.4 408 60.5
VMungo1383G2528 Vigna mungo HOM05D006228 ORTHO05D007847 1.3e-137 493.8 405 61.0
BolC3t15036H Brassica oleracea HOM05D006228 ORTHO05D007847 2.2e-137 493.0 411 60.1
A03p22360 Brassica napus HOM05D006228 ORTHO05D007847 2.9e-137 492.7 428 57.9
Sed0002982 Sechium edule HOM05D006228 ORTHO05D007847 2.9e-137 492.7 424 60.4
Psat5g127520 Pisum sativum HOM05D006228 ORTHO05D007847 5.0e-137 491.9 424 58.5
AUR62022833 Chenopodium quinoa HOM05D006228 ORTHO05D007847 6.5e-137 491.5 410 61.5
ClCG11G010510 Citrullus lanatus HOM05D006228 ORTHO05D007847 6.5e-137 491.5 433 58.2
PSO384G3635 Papaver somniferum HOM05D006228 ORTHO05D007847 6.5e-137 491.5 411 59.6
Sp4g22220 Schrenkiella parvula HOM05D006228 ORTHO05D007847 6.5e-137 491.5 422 58.5
BcaC01g05454 Brassica carinata HOM05D006228 ORTHO05D007847 8.5e-137 491.1 410 59.8
Ca_17139_v3 Cicer arietinum L. HOM05D006228 ORTHO05D007847 8.5e-137 491.1 424 59.2
CAN.G1280.21 Capsicum annuum HOM05D006228 ORTHO05D007847 1.1e-136 490.7 418 58.9
BraA03t11466Z Brassica rapa HOM05D006228 ORTHO05D007847 1.9e-136 490.0 413 59.3
Sabra08G0046800 Salix brachista HOM05D006228 ORTHO05D007847 2.5e-136 489.6 446 58.1
AL4G37490 Arabidopsis lyrata HOM05D006228 ORTHO05D007847 3.2e-136 489.2 416 58.2
Thhalv10016686m.g Eutrema salsugineum HOM05D006228 ORTHO05D007847 4.2e-136 488.8 422 58.8
CARHR134830 Cardamine hirsuta HOM05D006228 ORTHO05D007847 2.7e-135 486.1 410 58.8
Lj6g0016911 Lotus japonicus HOM05D006228 ORTHO05D007847 2.7e-135 486.1 419 59.2
AT2G39910 Arabidopsis thaliana HOM05D006228 ORTHO05D007847 8.0e-135 484.6 416 57.5
Aqoxy1G00736 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 1.0e-134 484.2 404 60.6
EL10Ac2g04780 Beta vulgaris HOM05D006228 ORTHO05D007847 4.0e-134 482.3 408 59.8
Peaxi162Scf00401g00030 Petunia axillaris HOM05D006228 ORTHO05D007847 4.0e-134 482.3 419 58.5
Nn2g13585 Nelumbo nucifera HOM05D006228 ORTHO05D007847 5.2e-134 481.9 432 58.1
Lj1A949T58 Lonicera japonica HOM05D006228 ORTHO05D007847 6.7e-134 481.5 434 57.8
Aqoxy3G00589 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 1.5e-133 480.3 404 60.1
Hund13827 Selenicereus undatus HOM05D006228 ORTHO05D007847 3.3e-133 479.2 463 55.5
Lalb_Chr18g0052781 Lupinus albus HOM05D006228 ORTHO05D007847 5.7e-133 478.4 431 58.0
Nitab4.5_0000278g0180 Nicotiana tabacum HOM05D006228 ORTHO05D007847 7.5e-133 478.0 422 57.8
BcaB01g03579 Brassica carinata HOM05D006228 ORTHO05D007847 3.7e-132 475.7 416 57.9
Carub.0004s2204 Capsella rubella HOM05D006228 ORTHO05D007847 1.4e-131 473.8 419 58.0
arahy.Tifrunner.gnm1.ann1.H1F5T1 Arachis hypogaea HOM05D006228 ORTHO05D007847 3.1e-131 472.6 454 54.8
Cc02_g06990 Coffea canephora HOM05D006228 ORTHO05D007847 5.3e-131 471.9 419 57.3
Hma1.2p1_0026F.1_g016930 Hydrangea macrophylla HOM05D006228 ORTHO05D007847 1.6e-130 470.3 303 73.6
Migut.F00709 Erythranthe guttata HOM05D006228 ORTHO05D007847 2.7e-130 469.5 426 58.2
Phvul.001G239600 Phaseolus vulgaris HOM05D006228 ORTHO05D007847 3.5e-130 469.2 408 60.0
ECA232G3403 Erigeron canadensis HOM05D006228 ORTHO05D007847 7.2e-128 461.5 406 57.9
AUR62012200 Chenopodium quinoa HOM05D006228 ORTHO05D007847 3.6e-127 459.1 401 57.4
Ciclev10031701m.g Citrus clementina HOM05D006228 ORTHO05D007847 4.7e-127 458.8 405 61.2
MELO3C025144.2 Cucumis melo HOM05D006228 ORTHO05D007847 8.0e-127 458.0 442 56.1
SGA_v2.0_scaffold2G01060 Striga asiatica HOM05D006228 ORTHO05D007847 6.8e-126 454.9 419 55.8
HanXRQChr09g0246891 Helianthus annuus HOM05D006228 ORTHO05D007847 7.5e-125 451.4 409 57.2
Atru.chr12.264 Acer truncatum HOM05D006228 ORTHO05D007847 1.7e-124 450.3 358 66.8
FAN10G3493 Fragaria x ananassa HOM05D006228 ORTHO05D007847 2.8e-124 449.5 414 58.2
Oeu006660.1 Olea europaea HOM05D006228 ORTHO05D007847 8.3e-124 448.0 428 55.8
Ah.16g103060 Amaranthus hybridus HOM05D006228 ORTHO05D007847 1.2e-122 444.1 421 54.9
PGR044G0451 Punica granatum HOM05D006228 ORTHO05D007847 2.3e-121 439.9 439 54.4
vmacro10067 Vaccinium macrocarpon HOM05D006228 ORTHO05D007847 7.2e-120 434.9 494 51.0
SHI03521 Sapria himalayana HOM05D006228 ORTHO05D007847 1.2e-119 434.1 435 53.8
SalBow5G2373 Salvia bowleyana HOM05D006228 ORTHO05D007847 1.7e-116 423.7 403 54.3
PSO585G0034 Papaver somniferum HOM05D006228 ORTHO05D007847 2.8e-116 422.9 297 67.0
Sc11g0007370 Simmondsia chinensis HOM05D006228 ORTHO05D007847 1.2e-114 417.5 369 57.7
Lsat_1_v5_gn_9_63220 Lactuca sativa HOM05D006228 ORTHO05D007847 5.9e-114 415.2 401 54.6
DCAR_011778 Daucus carota HOM05D006228 ORTHO05D007847 6.6e-113 411.8 424 52.4
ATR0580G418 Amborella trichopoda HOM05D006228 ORTHO05D007847 4.7e-111 405.6 430 50.2
Zm00001eb226270 Zea mays HOM05D006228 ORTHO05D007847 7.8e-106 388.3 396 51.0
arahy.Tifrunner.gnm1.ann1.PGVU2S Arachis hypogaea HOM05D006228 ORTHO05D007847 8.6e-105 384.8 358 56.7
Os06g0694100 Oryza sativa ssp. japonica HOM05D006228 ORTHO05D007847 1.5e-104 384.0 399 49.9
Eucgr.J00246 Eucalyptus grandis HOM05D006228 ORTHO05D007847 5.6e-104 382.1 460 47.8
FAN06G0021 Fragaria x ananassa HOM05D006228 ORTHO05D007847 3.1e-94 349.7 301 60.1
unitig_747.g21715 Utricularia gibba HOM05D006228 ORTHO05D007847 1.7e-92 344.0 427 45.2
Cpa.g.sc19.228 Carica papaya HOM05D006228 ORTHO05D007847 2.8e-87 326.6 446 44.8
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 1.4e-86 324.3 324 52.8
SEGI_03712 Sequoiadendron giganteum HOM05D006228 ORTHO05D007847 1.8e-86 323.9 423 42.1
BcaC02g07378 Brassica carinata HOM05D006228 ORTHO05D007847 7.9e-66 255.4 243 55.1
QL08p062537 Quercus lobata HOM05D006228 ORTHO05D007847 9.3e-59 231.9 148 70.3
AagrBONN_evm.TU.Sc2ySwM_344.5121 Anthoceros agrestis HOM05D006228 ORTHO05D007847 2.7e-58 230.3 378 36.2
Sed0008304 Sechium edule HOM05D006228 ORTHO05D007847 3.9e-57 226.5 359 42.1
BcaB06g29116 Brassica carinata HOM05D006228 ORTHO05D007847 1.9e-56 224.2 420 37.4
Pp3c11_8050 Physcomitrium patens HOM05D006228 ORTHO05D007847 1.3e-55 221.5 286 39.2
Actinidia00930 Actinidia chinensis HOM05D006228 ORTHO05D007847 2.4e-54 217.2 145 72.4
RcHm_v2.0_Chr2g0110551 Rosa chinensis HOM05D006228 ORTHO05D007847 1.5e-53 214.5 141 68.8
Mapoly0014s0032 Marchantia polymorpha HOM05D006228 ORTHO05D007847 2.6e-53 213.8 279 39.1
HPP92_018568 Vanilla planifolia HOM05D006228 ORTHO05D007847 4.9e-52 209.5 262 44.7
SMO273G0042 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 2.3e-49 200.7 286 39.2
HPP92_018569 Vanilla planifolia HOM05D006228 ORTHO05D007847 4.3e-48 196.4 149 58.4
RcHm_v2.0_Chr1g0339731 Rosa chinensis HOM05D006228 ORTHO05D007847 6.1e-42 176.0 141 61.0
Actinidia25353 Actinidia chinensis HOM05D006228 ORTHO05D007847 1.0e-41 175.3 162 57.4
MSTRG.8975 Avicennia marina HOM05D006228 ORTHO05D007847 5.1e-41 172.9 217 46.1
BolC4t28269H Brassica oleracea HOM05D006228 ORTHO05D007847 1.2e-37 161.8 159 50.9
SMO147G0063 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 3.9e-33 146.7 286 33.2
MCO16G020 Micromonas commoda HOM05D006228 ORTHO05D007847 4.5e-21 106.7 253 23.7
arahy.Tifrunner.gnm1.ann1.DSNI2G Arachis hypogaea HOM05D002669 ORTHO05D003001 1.5e-16 91.7 105 46.7
arahy.Tifrunner.gnm1.ann1.YTZ5F3 Arachis hypogaea HOM05D006228 ORTHO05D007847 7.5e-16 89.4 65 61.5
C04p67680 Brassica napus HOM05D006228 ORTHO05D007847 9.1e-14 82.4 106 44.3


User provided reference genes

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