Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 0.0e+00 1253.8 629 100.0
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 7.8e-296 1020.0 629 81.9
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 5.0e-295 1017.3 629 81.7
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 6.0e-280 967.2 630 79.8
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 2.7e-232 808.9 627 66.7
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 4.6e-232 808.1 514 80.5
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 2.3e-231 805.8 636 67.1
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 2.2e-229 799.3 639 66.0
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 1.1e-225 786.9 627 64.3
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 3.6e-224 781.9 631 65.9
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 6.1e-224 781.2 646 65.0
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 6.7e-223 777.7 639 64.5
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 1.1e-222 776.9 632 65.2
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 4.4e-222 775.0 627 64.9
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 5.7e-222 774.6 635 63.5
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 2.2e-221 772.7 627 64.4
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 2.8e-221 772.3 637 64.7
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 2.8e-221 772.3 669 62.3
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 3.1e-220 768.8 623 64.7
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.3e-218 763.5 639 64.3
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 1.6e-216 756.5 627 63.6
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 6.1e-216 754.6 636 62.9
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 5.2e-215 751.5 641 62.2
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 2.6e-214 749.2 632 62.2
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 7.5e-214 747.7 629 63.1
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 1.3e-213 746.9 628 63.1
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 4.8e-213 745.0 635 61.7
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 4.8e-213 745.0 625 62.4
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 4.1e-212 741.9 573 68.9
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 9.1e-212 740.7 634 61.4
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 1.2e-211 740.3 634 61.0
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.0e-210 737.3 624 61.1
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 1.0e-210 737.3 631 61.6
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 1.7e-210 736.5 633 61.5
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 2.2e-210 736.1 619 62.7
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 5.0e-210 734.9 626 61.5
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 7.2e-209 731.1 625 61.9
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.1e-208 729.6 634 61.5
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 4.7e-208 728.4 625 60.6
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 4.0e-207 725.3 632 60.8
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 2.2e-205 719.5 634 60.3
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 1.3e-202 710.3 634 61.0
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 9.5e-201 704.1 646 59.3
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 2.8e-200 702.6 638 59.6
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 5.2e-199 698.4 631 63.7
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 1.5e-198 696.8 637 58.7
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 5.7e-198 694.9 631 58.3
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.8e-196 689.9 686 56.4
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 1.8e-196 689.9 651 57.8
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 1.2e-195 687.2 633 57.8
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.6e-195 686.8 586 63.7
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 3.5e-195 685.6 639 57.9
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 1.3e-194 683.7 632 57.1
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 1.5e-193 680.2 618 58.3
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 2.5e-193 679.5 626 57.5
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 8.9e-191 671.0 647 56.9
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.6e-190 669.5 597 61.0
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 1.7e-189 666.8 636 56.6
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 2.9e-189 666.0 650 57.1
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 1.4e-188 663.7 494 70.6
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 3.0e-186 656.0 579 59.9
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 6.6e-186 654.8 633 55.9
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 1.5e-185 653.7 643 54.1
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 5.6e-185 651.7 622 56.6
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 2.8e-184 649.4 634 56.3
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 1.8e-183 646.7 650 55.7
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 5.2e-183 645.2 641 56.3
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 8.9e-183 644.4 644 55.7
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 5.8e-182 641.7 639 56.0
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.3e-181 640.6 563 59.7
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 4.9e-181 638.6 608 57.9
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 6.4e-181 638.3 620 55.8
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 8.3e-181 637.9 634 55.0
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 7.0e-180 634.8 531 63.1
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 9.2e-180 634.4 639 55.4
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 6.0e-179 631.7 620 55.0
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 7.8e-179 631.3 644 54.0
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 3.9e-178 629.0 644 55.1
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 9.5e-177 624.4 695 52.5
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 1.8e-175 620.2 623 55.1
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.3e-175 619.8 640 52.5
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 4.0e-175 619.0 607 56.7
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 2.6e-174 616.3 645 53.6
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 8.3e-173 611.3 644 52.5
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 7.1e-172 608.2 622 53.1
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 1.2e-171 607.4 633 52.3
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 2.7e-171 606.3 655 52.2
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 7.8e-171 604.7 558 59.3
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 3.0e-170 602.8 632 52.4
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 8.6e-170 601.3 578 58.3
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 4.3e-169 599.0 588 55.3
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 4.3e-169 599.0 626 52.9
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 9.5e-169 597.8 637 51.6
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.6e-168 597.0 632 51.9
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 2.8e-168 596.3 624 52.1
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 6.2e-168 595.1 481 63.2
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 6.2e-168 595.1 636 51.7
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.4e-167 594.0 563 56.0
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 2.0e-166 590.1 637 51.0
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 5.8e-166 588.6 634 51.6
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 8.4e-165 584.7 633 50.2
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 8.4e-165 584.7 633 50.2
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 1.1e-164 584.3 634 51.1
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 1.4e-164 583.9 660 52.1
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 1.4e-164 583.9 624 51.0
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 2.4e-164 583.2 633 50.1
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 3.5e-163 579.3 635 51.2
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 6.6e-162 575.1 672 49.1
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 8.6e-162 574.7 598 54.2
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 1.9e-161 573.5 634 49.2
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 1.9e-161 573.5 634 49.2
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 7.3e-161 571.6 492 60.6
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 3.6e-160 569.3 650 48.8
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 8.9e-159 564.7 636 49.5
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 1.3e-157 560.8 487 59.8
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 4.9e-157 558.9 599 51.3
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 5.4e-156 555.4 640 50.2
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 1.0e-154 551.2 629 49.6
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 1.8e-151 540.4 536 53.7
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 6.9e-151 538.5 687 47.6
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 8.4e-149 531.6 589 50.6
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 2.3e-146 523.5 528 55.9
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 3.0e-146 523.1 531 55.0
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 1.2e-139 501.1 526 52.9
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 3.7e-136 489.6 629 48.3
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 4.2e-132 476.1 421 58.4
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 3.5e-131 473.0 621 47.7
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 7.7e-118 428.7 475 50.3
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 8.5e-117 425.2 552 46.4
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 1.9e-116 424.1 625 42.9
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 7.2e-116 422.2 478 49.2
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 1.0e-114 418.3 629 41.7
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.0e-109 401.7 481 49.3
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.0e-109 401.7 481 49.3
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 7.2e-108 395.6 567 43.6
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 1.6e-102 377.9 382 54.5
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 6.1e-99 365.9 535 45.6
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 1.4e-71 275.0 599 34.4
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 1.3e-69 268.5 509 36.5
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 4.4e-65 253.4 271 52.8
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 3.5e-62 243.8 344 44.8
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 1.7e-48 198.4 170 58.2
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 4.9e-48 196.8 195 50.3
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 6.6e-45 186.4 125 72.0
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 2.4e-26 124.8 166 38.0
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 6.7e-21 106.7 164 41.5
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 1.3e-19 102.4 64 73.4
Oeu025172.2 Olea europaea HOM05D004604 ORTHO05D005744 9.0e-18 96.3 126 46.0
CDE04G1491 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 4.5e-09 67.4 58 55.2
QL01p024866 Quercus lobata HOM05D004604 ORTHO05D005744 5.9e-09 67.0 70 57.1
QL04p091051 Quercus lobata HOM05D004604 ORTHO05D013998 7.7e-09 66.6 70 55.7
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-08 65.1 39 71.8


User provided reference genes

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