Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 1.3e-157 559.7 277 100.0
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 2.1e-128 462.6 277 81.2
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 7.8e-123 444.1 275 77.8
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 3.0e-122 442.2 277 77.3
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 4.4e-118 428.3 251 84.9
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 4.1e-116 421.8 273 76.6
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 6.0e-115 417.9 277 75.1
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 3.3e-113 412.1 277 72.2
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 1.2e-110 403.7 278 71.9
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 5.4e-108 394.8 277 72.2
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 7.8e-107 391.0 278 70.1
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 1.7e-106 389.8 277 72.2
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 3.9e-106 388.7 278 69.1
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 3.9e-106 388.7 277 72.2
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 8.6e-106 387.5 246 76.4
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 1.5e-105 386.7 278 68.0
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 1.4e-103 380.2 277 68.6
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.8e-103 379.8 278 68.7
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.8e-103 379.8 278 69.1
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 1.2e-102 377.1 275 68.7
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 2.2e-101 372.9 278 68.3
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 2.9e-101 372.5 277 66.8
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 3.7e-101 372.1 277 66.4
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 4.9e-101 371.7 278 68.3
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 3.2e-100 369.0 273 67.4
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 3.2e-100 369.0 280 68.2
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 5.4e-100 368.2 275 68.4
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 9.2e-100 367.5 277 66.1
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 9.2e-100 367.5 277 66.1
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 9.2e-100 367.5 277 67.5
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 1.2e-99 367.1 277 65.0
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 3.5e-99 365.5 277 67.1
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 6.0e-99 364.8 277 66.1
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 7.8e-99 364.4 274 66.4
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 1.0e-98 364.0 277 67.1
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 2.3e-98 362.8 274 66.1
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 3.0e-98 362.5 277 65.3
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 3.9e-98 362.1 277 65.0
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 1.1e-97 360.5 246 70.3
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 1.9e-97 359.8 277 65.0
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 2.5e-97 359.4 274 63.9
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 4.3e-97 358.6 277 66.1
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 7.3e-97 357.8 282 65.2
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 9.6e-97 357.5 262 69.1
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 2.8e-96 355.9 259 69.9
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 4.7e-96 355.1 261 68.2
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 4.7e-96 355.1 231 74.9
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 8.1e-96 354.4 277 64.6
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 8.1e-96 354.4 278 66.9
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.1e-95 354.0 239 71.1
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 1.4e-95 353.6 282 63.8
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 3.1e-95 352.4 274 64.2
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 4.0e-95 352.1 207 80.7
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 4.0e-95 352.1 273 64.1
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 6.8e-95 351.3 253 68.0
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 6.8e-95 351.3 232 73.7
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 2.6e-94 349.4 266 64.7
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 4.4e-94 348.6 283 63.6
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 9.9e-94 347.4 284 62.3
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 1.3e-93 347.1 277 63.9
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.3e-93 347.1 239 71.1
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 1.3e-93 347.1 281 63.3
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 1.3e-93 347.1 277 62.8
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 3.8e-93 345.5 266 63.5
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 4.9e-93 345.1 277 62.5
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 6.4e-93 344.7 207 81.2
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 1.9e-92 343.2 282 62.8
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 2.4e-92 342.8 267 64.0
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 3.2e-92 342.4 274 62.8
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 9.3e-92 340.9 235 70.6
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 1.2e-91 340.5 207 78.3
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 1.2e-91 340.5 274 62.0
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 2.1e-91 339.7 277 62.8
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 2.7e-91 339.3 278 60.8
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 4.6e-91 338.6 267 63.3
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 6.0e-91 338.2 267 62.5
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 2.3e-90 336.3 277 59.9
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 3.0e-90 335.9 277 59.9
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 3.0e-90 335.9 204 78.4
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 3.0e-90 335.9 209 77.5
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 6.6e-90 334.7 242 68.2
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 8.7e-90 334.3 204 78.4
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 8.7e-90 334.3 234 69.2
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 8.7e-90 334.3 275 60.0
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 1.5e-89 333.6 253 64.8
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 4.3e-89 332.0 217 71.9
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 2.1e-88 329.7 236 67.8
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 3.6e-88 328.9 278 59.4
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 4.8e-88 328.6 276 61.2
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 4.8e-88 328.6 234 68.4
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 6.2e-88 328.2 242 68.6
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 8.1e-88 327.8 209 76.1
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 1.4e-87 327.0 277 58.8
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 2.4e-87 326.2 278 60.1
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 5.3e-87 325.1 276 60.1
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 9.0e-87 324.3 254 64.6
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 1.5e-86 323.6 260 62.7
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 3.4e-86 322.4 221 70.1
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 9.9e-86 320.9 217 70.0
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 5.4e-84 315.1 224 65.6
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 1.6e-83 313.5 217 67.7
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 3.5e-83 312.4 204 76.0
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 3.3e-81 305.8 196 75.5
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 5.6e-81 305.1 217 67.3
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 9.6e-81 304.3 204 72.5
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 4.0e-79 298.9 210 69.5
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 2.2e-77 293.1 209 68.4
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 1.8e-74 283.5 206 67.5
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 6.7e-74 281.6 226 63.3
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 1.3e-72 277.3 242 58.7
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 8.1e-72 274.6 217 64.1
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 3.1e-71 272.7 199 65.3
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 4.5e-70 268.9 215 65.6
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 7.6e-70 268.1 214 61.2
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 1.1e-68 264.2 206 64.1
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.8e-63 246.9 181 69.1
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 1.8e-58 230.3 272 47.4
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 3.0e-58 229.6 208 55.8
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 2.5e-57 226.5 191 60.7
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 1.3e-56 224.2 209 53.6
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 2.8e-56 223.0 196 61.2
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.2e-54 217.6 213 54.0
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 5.0e-53 212.2 119 79.0
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 1.1e-52 211.1 200 57.0
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 1.2e-51 207.6 224 45.5
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 7.9e-51 204.9 209 53.1
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 1.7e-45 187.2 238 38.2
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 1.1e-39 167.9 216 41.7
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 5.3e-39 165.6 108 75.0
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 6.1e-35 152.1 139 59.7
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 3.1e-31 139.8 130 58.5
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 1.6e-30 137.5 121 62.0
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 2.5e-28 130.2 94 67.0
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 7.7e-22 108.6 88 68.2
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 1.2e-19 101.3 110 50.9
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 1.2e-19 101.3 111 45.0
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 8.3e-16 88.6 133 41.4
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 2.9e-13 80.1 246 32.5
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 5.6e-12 75.9 58 69.0
SGA_v2.0_scaffold250G44984 Striga asiatica HOM05D005616 ORTHO05D401959 4.9e-08 62.8 60 53.3
SGA_v2.0_scaffold250G44986 Striga asiatica HOM05D005616 ORTHO05D403636 3.5e-06 56.6 33 66.7


User provided reference genes

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