Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 0.0e+00 1485.3 722 100.0
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 0.0e+00 1164.4 681 82.7
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 0.0e+00 1150.2 738 76.8
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 0.0e+00 1101.3 672 78.1
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 0.0e+00 1100.5 672 77.7
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 0.0e+00 1097.0 726 75.1
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 0.0e+00 1096.3 672 77.7
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.6e-295 1018.5 625 79.0
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 5.4e-293 1010.7 720 69.0
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.5e-292 1008.1 737 69.5
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 1.1e-288 996.5 736 66.6
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 4.0e-288 994.6 689 69.8
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 3.2e-285 984.9 732 66.3
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 5.1e-283 977.6 701 67.2
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 6.2e-281 970.7 720 64.4
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 4.0e-280 968.0 729 65.0
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 2.4e-277 958.7 719 63.7
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 4.6e-276 954.5 710 65.8
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 1.8e-275 952.6 718 63.2
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 3.0e-275 951.8 724 64.2
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 1.5e-274 949.5 702 64.8
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 4.8e-273 944.5 761 61.8
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 9.0e-272 940.3 726 63.8
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 1.2e-268 929.9 661 68.2
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 1.6e-268 929.5 719 63.6
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 2.7e-268 928.7 667 66.9
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 4.6e-268 927.9 717 63.3
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 3.0e-267 925.2 715 63.4
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 8.7e-267 923.7 717 63.0
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 2.8e-265 918.7 736 61.8
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 4.8e-265 917.9 705 63.8
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.1e-264 916.8 692 65.0
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 2.4e-264 915.6 713 63.1
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 3.4e-263 911.8 706 62.3
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 7.6e-263 910.6 734 62.0
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.3e-262 909.8 725 62.5
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.7e-262 909.4 713 63.3
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 9.3e-261 903.7 719 62.4
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 1.2e-260 903.3 712 62.2
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 1.6e-260 902.9 712 61.8
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 4.6e-260 901.4 744 60.8
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 1.3e-259 899.8 728 60.9
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.3e-259 899.0 759 59.9
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 7.4e-258 894.0 716 60.5
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 1.3e-257 893.3 731 62.4
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.3e-257 893.3 734 61.2
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 1.6e-257 892.9 725 60.0
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 2.8e-257 892.1 709 62.5
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 3.7e-257 891.7 701 62.1
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 6.3e-257 891.0 719 60.6
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 1.1e-256 890.2 664 64.9
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 2.4e-256 889.0 701 61.9
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 1.5e-255 886.3 721 60.7
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 1.0e-254 883.6 711 61.7
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 1.3e-254 883.2 731 59.5
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 5.0e-254 881.3 706 61.5
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 9.4e-253 877.1 670 63.4
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 6.1e-252 874.4 735 59.3
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 1.8e-251 872.8 665 63.8
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 5.1e-251 871.3 731 61.1
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 8.8e-251 870.5 724 59.1
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 1.9e-250 869.4 723 59.2
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 5.7e-250 867.8 667 63.1
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 3.7e-249 865.1 609 67.7
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 8.2e-249 864.0 718 59.6
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 1.2e-247 860.1 670 62.2
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 1.2e-247 860.1 742 57.4
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 5.9e-247 857.8 663 62.3
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 1.0e-246 857.1 673 61.8
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 3.8e-246 855.1 717 58.7
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 1.1e-245 853.6 725 58.3
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 2.5e-245 852.4 742 56.9
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 1.2e-244 850.1 675 60.9
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 2.7e-244 849.0 616 67.0
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 2.7e-244 849.0 676 61.7
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 3.7e-241 838.6 716 57.0
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 1.4e-240 836.6 684 60.1
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 2.9e-238 828.9 698 58.7
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 9.4e-237 823.9 591 67.0
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 3.6e-236 822.0 889 50.4
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 3.0e-235 818.9 678 59.7
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 8.2e-233 810.8 592 66.4
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.0e-231 806.2 674 58.8
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 2.5e-229 799.3 680 58.4
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 5.5e-229 798.1 737 53.3
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.4e-227 793.5 669 56.7
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 8.8e-227 790.8 729 58.6
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 1.2e-226 790.4 727 55.0
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.7e-225 786.6 675 56.1
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 6.3e-225 784.6 688 58.4
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 1.4e-224 783.5 668 56.1
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 5.3e-224 781.6 669 56.1
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 9.1e-224 780.8 679 55.8
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 3.8e-222 775.4 717 53.7
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 5.0e-222 775.0 729 54.7
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 8.5e-222 774.2 722 53.0
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 1.5e-221 773.5 681 55.4
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 1.9e-221 773.1 676 55.2
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 4.2e-221 771.9 671 56.2
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 2.7e-220 769.2 676 55.2
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 2.7e-220 769.2 693 54.3
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 2.7e-220 769.2 676 55.2
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.0e-219 767.3 774 51.7
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 1.4e-219 766.9 669 55.3
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.0e-219 765.8 726 54.3
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 5.2e-219 765.0 718 53.3
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 4.1e-216 755.4 722 52.4
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 9.1e-216 754.2 666 58.3
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.6e-215 753.4 667 54.6
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 2.0e-215 753.1 669 54.9
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 1.0e-214 750.7 667 57.4
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.3e-214 750.4 675 54.7
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 1.3e-214 750.4 723 52.4
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.1e-213 747.3 671 53.4
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 7.2e-213 744.6 664 57.1
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 1.0e-211 740.7 675 57.2
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 5.2e-211 738.4 534 67.4
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 2.2e-209 733.0 739 50.3
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 8.3e-209 731.1 767 49.0
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 3.8e-206 722.2 666 56.2
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 4.3e-205 718.8 659 56.0
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 7.3e-205 718.0 668 55.1
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.0e-203 714.1 677 54.7
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 2.0e-199 699.9 684 51.9
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 2.1e-196 689.9 721 49.4
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 2.3e-195 686.4 555 60.7
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.0e-190 669.5 685 51.4
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 3.1e-187 659.4 708 49.9
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 9.2e-184 647.9 670 49.0
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 1.3e-182 644.0 524 58.2
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 1.1e-181 641.0 671 50.4
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 1.1e-152 544.7 544 52.0
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 9.4e-136 488.4 327 68.5
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 3.2e-128 463.4 426 52.3
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 1.5e-122 444.5 382 57.1
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 6.3e-116 422.5 301 64.1
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 3.8e-113 413.3 396 51.0
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 2.5e-112 410.6 390 52.6
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 3.8e-105 386.7 231 78.8
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 6.3e-100 369.4 403 46.4
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 4.1e-99 366.7 456 43.2
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 2.8e-95 354.0 563 35.7
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 1.4e-91 341.7 322 55.0
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 8.3e-84 315.8 542 34.5
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 3.2e-83 313.9 313 46.6
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 1.9e-80 304.7 575 32.9
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 4.1e-67 260.4 242 56.2
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 2.4e-59 234.6 156 71.8
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 6.0e-58 229.9 137 75.2
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 7.8e-58 229.6 208 56.7
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 4.9e-52 210.3 210 51.0
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 3.0e-49 201.1 219 48.9
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 5.6e-48 196.8 233 45.5
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 2.9e-44 184.5 119 65.5
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 6.4e-44 183.3 128 64.8
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 1.6e-42 178.7 182 51.6
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.1e-42 178.3 375 31.7
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 3.8e-36 157.5 271 38.7
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 1.4e-35 155.6 99 72.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 1.4e-35 155.6 99 72.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 1.4e-35 155.6 99 72.7
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 4.5e-29 134.0 245 34.3
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 2.9e-28 131.3 135 47.4
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 2.9e-28 131.3 227 37.0
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 1.1e-27 129.4 246 32.5
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 7.4e-24 116.7 146 42.5
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.7e-20 105.5 200 35.5
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.2e-20 105.1 130 44.6
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 6.1e-18 97.1 59 71.2
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 7.4e-16 90.1 73 60.3
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 3.8e-12 77.8 48 66.7
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 3.8e-12 77.8 48 66.7
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 9.4e-11 73.2 46 73.9


User provided reference genes

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