Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G007100 Theobroma cacao HOM05D002744 ORTHO05D008989 1.5e-101 372.9 191 100.0
Gohir.D04G071200 Gossypium hirsutum HOM05D002744 ORTHO05D008989 3.2e-91 338.6 191 90.6
Gohir.A05G332500 Gossypium hirsutum HOM05D002744 ORTHO05D008989 1.3e-89 333.2 193 89.6
Duzib114G0765 Durio zibethinus HOM05D002744 ORTHO05D008989 3.9e-89 331.6 193 89.6
Gorai.012G080100 Gossypium raimondii HOM05D002744 ORTHO05D008989 8.1e-87 323.9 203 85.2
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 1.5e-80 303.1 173 87.3
CiPaw.02G197300 Carya illinoinensis HOM05D002744 ORTHO05D008989 3.3e-80 302.0 192 79.2
GSVIVG01032723001 Vitis vinifera HOM05D002744 ORTHO05D008989 1.6e-79 299.7 191 80.6
Ciclev10032836m.g Citrus clementina HOM05D002744 ORTHO05D008989 2.4e-78 295.8 191 79.1
Dinv21809 Davidia involucrata HOM05D002744 ORTHO05D008989 2.0e-77 292.7 193 81.3
Haze_17321 Corylus avellana HOM05D002744 ORTHO05D008989 1.6e-74 283.1 192 76.6
QL08p064284 Quercus lobata HOM05D002744 ORTHO05D008989 1.9e-72 276.2 191 75.9
Eucgr.G03110 Eucalyptus grandis HOM05D002744 ORTHO05D008989 3.3e-72 275.4 191 74.3
Peaxi162Scf00284g00123 Petunia axillaris HOM05D002744 ORTHO05D008989 1.8e-70 269.6 192 70.8
PGR142G3983 Punica granatum HOM05D002744 ORTHO05D008989 6.9e-70 267.7 187 72.7
Sed0024728 Sechium edule HOM05D002744 ORTHO05D008989 6.9e-70 267.7 192 72.4
Nitab4.5_0000928g0050 Nicotiana tabacum HOM05D002744 ORTHO05D008989 1.2e-69 266.9 191 71.2
CsaV3_5G010720 Cucumis sativus L. HOM05D002744 ORTHO05D008989 2.0e-69 266.2 193 71.0
Actinidia00986 Actinidia chinensis HOM05D002744 ORTHO05D008989 3.4e-69 265.4 192 74.0
Cc02_g05720 Coffea canephora HOM05D002744 ORTHO05D008989 3.4e-69 265.4 187 72.7
Sopen02g021690 Solanum pennellii HOM05D002744 ORTHO05D008989 4.5e-69 265.0 192 71.4
Manes.10G008400 Manihot esculenta HOM05D002744 ORTHO05D008989 7.6e-69 264.2 187 72.7
Glyma.18G022300 Glycine max HOM05D002744 ORTHO05D008989 1.3e-68 263.5 192 70.3
arahy.Tifrunner.gnm1.ann1.HIE7A8 Arachis hypogaea HOM05D002744 ORTHO05D008989 2.9e-68 262.3 192 68.8
RcHm_v2.0_Chr1g0371481 Rosa chinensis HOM05D002744 ORTHO05D008989 2.9e-68 262.3 194 71.1
TWI38G2197 Tripterygium wilfordii HOM05D002744 ORTHO05D008989 4.9e-68 261.5 181 72.9
MD07G1229300 Malus domestica HOM05D002744 ORTHO05D008989 6.4e-68 261.2 191 72.3
Nn2g11068 Nelumbo nucifera HOM05D002744 ORTHO05D008989 2.4e-67 259.2 189 69.8
Rhsim09G0182800 Rhododendron simsii HOM05D002744 ORTHO05D008989 4.2e-67 258.5 188 72.3
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 5.4e-67 258.1 181 72.9
Glyma.11G234700 Glycine max HOM05D002744 ORTHO05D008989 5.4e-67 258.1 188 70.2
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 3.5e-66 255.4 192 68.2
FvH4_7g25501 Fragaria vesca HOM05D002744 ORTHO05D008989 1.3e-65 253.4 192 67.2
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.3e-65 253.4 192 68.2
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 3.0e-65 252.3 192 66.7
CANSAT56G2966 Cannabis sativa HOM05D002744 ORTHO05D008989 3.9e-65 251.9 192 67.7
MD01G1161400 Malus domestica HOM05D002744 ORTHO05D008989 3.9e-65 251.9 191 69.6
Hma1.2p1_1240F.1_g269640 Hydrangea macrophylla HOM05D002744 ORTHO05D008989 5.1e-65 251.5 159 79.9
AL5G37530 Arabidopsis lyrata HOM05D002744 ORTHO05D008989 6.7e-65 251.1 191 66.0
Phvul.001G248100 Phaseolus vulgaris HOM05D002744 ORTHO05D008989 6.7e-65 251.1 192 65.1
arahy.Tifrunner.gnm1.ann1.N80L0Z Arachis hypogaea HOM05D002744 ORTHO05D008989 1.5e-64 250.0 187 66.8
arahy.Tifrunner.gnm1.ann1.B5C26Y Arachis hypogaea HOM05D002744 ORTHO05D008989 1.9e-64 249.6 187 66.8
MSTRG.12212 Avicennia marina HOM05D002744 ORTHO05D008989 4.3e-64 248.4 182 72.0
Hund13513 Selenicereus undatus HOM05D002744 ORTHO05D008989 5.6e-64 248.1 188 69.1
EL10Ac2g04293 Beta vulgaris HOM05D002744 ORTHO05D008989 9.6e-64 247.3 187 69.5
Potri.008G075600 Populus trichocarpa HOM05D002744 ORTHO05D008989 2.8e-63 245.7 188 69.7
Thhalv10006252m.g Eutrema salsugineum HOM05D002744 ORTHO05D008989 3.6e-63 245.4 190 64.7
Sp5g06290 Schrenkiella parvula HOM05D002744 ORTHO05D008989 6.2e-63 244.6 190 65.8
Carub.0005s2299 Capsella rubella HOM05D002744 ORTHO05D008989 8.1e-63 244.2 190 64.2
BcaB08g34630 Brassica carinata HOM05D002744 ORTHO05D008989 1.1e-62 243.8 190 65.3
ECA233G4001 Erigeron canadensis HOM05D002744 ORTHO05D008989 1.1e-62 243.8 195 66.2
vmacro09984 Vaccinium macrocarpon HOM05D002744 ORTHO05D008989 1.1e-62 243.8 220 61.8
Migut.A01076 Erythranthe guttata HOM05D002744 ORTHO05D008989 1.8e-62 243.0 189 68.8
Medtr3g072120 Medicago truncatula HOM05D002744 ORTHO05D008989 2.4e-62 242.7 193 66.3
AUR62022976 Chenopodium quinoa HOM05D002744 ORTHO05D008989 5.3e-62 241.5 185 68.1
PSO017G6389 Papaver somniferum HOM05D002744 ORTHO05D008989 9.0e-62 240.7 191 63.4
HanXRQChr17g0560791 Helianthus annuus HOM05D002744 ORTHO05D008989 1.5e-61 240.0 191 64.4
Nitab4.5_0000263g0100 Nicotiana tabacum HOM05D002744 ORTHO05D008989 1.5e-61 240.0 161 75.2
AT3G56210 Arabidopsis thaliana HOM05D002744 ORTHO05D008989 2.0e-61 239.6 192 63.0
Sabra08G0056200 Salix brachista HOM05D002744 ORTHO05D008989 2.6e-61 239.2 188 67.6
CARHR166360 Cardamine hirsuta HOM05D002744 ORTHO05D008989 4.5e-61 238.4 170 68.2
TPR.G28641 Trifolium pratense HOM05D002744 ORTHO05D008989 7.6e-61 237.7 192 64.1
Atru.BG.256.p Acer truncatum HOM05D002744 ORTHO05D008989 9.9e-61 237.3 154 80.5
Lju41C22T0 Lonicera japonica HOM05D002744 ORTHO05D008989 1.3e-60 236.9 159 77.4
PSO170G0776 Papaver somniferum HOM05D002744 ORTHO05D008989 1.3e-60 236.9 191 62.3
Lj6g0011522 Lotus japonicus HOM05D002744 ORTHO05D008989 1.7e-60 236.5 194 64.4
Lj8C58T1 Lonicera japonica HOM05D002744 ORTHO05D008989 3.8e-60 235.3 159 76.7
DCAR_011891 Daucus carota HOM05D002744 ORTHO05D008989 6.4e-60 234.6 156 76.3
Ca_15179_v3 Cicer arietinum L. HOM05D002744 ORTHO05D008989 8.4e-60 234.2 192 62.5
THA.LOC104824346 Tarenaya hassleriana HOM05D002744 ORTHO05D008989 1.1e-59 233.8 183 63.4
A09p49190 Brassica napus HOM05D002744 ORTHO05D008989 4.2e-59 231.9 191 62.8
SGA_v2.0_scaffold36G14267 Striga asiatica HOM05D002744 ORTHO05D008989 4.2e-59 231.9 181 71.3
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 9.3e-59 230.7 160 73.8
BraA09t40372Z Brassica rapa HOM05D002744 ORTHO05D008989 1.2e-58 230.3 199 60.8
SalBow3G4547 Salvia bowleyana HOM05D002744 ORTHO05D008989 3.5e-58 228.8 174 68.4
Lalb_Chr08g0231351 Lupinus albus HOM05D002744 ORTHO05D008989 6.0e-58 228.0 189 61.9
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.8e-57 226.5 214 57.9
AUR62012334 Chenopodium quinoa HOM05D002744 ORTHO05D008989 1.6e-55 219.9 153 71.9
Lsat_1_v5_gn_8_13401 Lactuca sativa HOM05D002744 ORTHO05D008989 6.2e-55 218.0 155 70.3
Oeu026180.1 Olea europaea HOM05D002744 ORTHO05D008989 1.1e-54 217.2 137 79.6
TAR369G0133 Trochodendron aralioides HOM05D000826 ORTHO05D001831 6.9e-54 214.5 146 73.3
VMungo1383G3724 Vigna mungo HOM05D002744 ORTHO05D008989 3.4e-53 212.2 160 65.0
unitig_32.g11706 Utricularia gibba HOM05D002744 ORTHO05D008989 4.5e-53 211.8 178 62.9
unitig_33.g30211 Utricularia gibba HOM05D002744 ORTHO05D008989 4.5e-53 211.8 178 62.9
Os03g0665800 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D008989 1.3e-52 210.3 164 62.2
ATR0681G046 Amborella trichopoda HOM05D000826 ORTHO05D008989 1.7e-52 209.9 184 61.4
ClCG07G004800 Citrullus lanatus HOM05D002744 ORTHO05D008989 4.2e-51 205.3 194 60.8
HPP92_013966 Vanilla planifolia HOM05D002744 ORTHO05D008989 7.1e-51 204.5 175 60.0
Hma1.2p1_1240F.1_g269630 Hydrangea macrophylla HOM05D002744 ORTHO05D008989 2.1e-50 203.0 135 77.8
Prupe.2G259500 Prunus persica HOM05D002744 ORTHO05D008989 3.0e-49 199.1 126 81.7
BcaC07g39936 Brassica carinata HOM05D002744 ORTHO05D008989 1.5e-48 196.8 145 69.0
C08p31530 Brassica napus HOM05D002744 ORTHO05D008989 1.5e-48 196.8 148 68.2
BcaB01g00016 Brassica carinata HOM05D002744 ORTHO05D008989 4.3e-48 195.3 159 63.5
EL10Ac2g04295 Beta vulgaris HOM05D002744 ORTHO05D008989 6.9e-46 188.0 143 69.2
PGSC0003DMG400010239 Solanum tuberosum HOM05D002744 ORTHO05D008989 1.2e-45 187.2 125 80.0
Lj1A963T49 Lonicera japonica HOM05D002744 ORTHO05D008989 2.0e-45 186.4 111 84.7
Solyc02g076790.4 Solanum lycopersicum HOM05D002744 ORTHO05D008989 1.0e-44 184.1 125 77.6
MELO3C020107.2 Cucumis melo HOM05D002744 ORTHO05D008989 1.9e-43 179.9 193 52.3
CDE02G4284 Ceratophyllum demersum HOM05D002744 ORTHO05D008989 2.5e-43 179.5 132 68.2
SEGI_09795 Sequoiadendron giganteum HOM05D002744 ORTHO05D008989 4.2e-43 178.7 181 55.2
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 1.2e-42 177.2 121 70.2
BcaB01g00017 Brassica carinata HOM05D002744 ORTHO05D008989 1.6e-42 176.8 174 56.3
BolC8t50775H Brassica oleracea HOM05D002744 ORTHO05D008989 2.7e-42 176.0 183 51.4
Gohir.A10G240750 Gossypium hirsutum HOM05D002744 ORTHO05D008989 2.7e-42 176.0 124 75.0
TAR623G0678 Trochodendron aralioides HOM05D002744 ORTHO05D008989 3.6e-42 175.6 122 75.4
Aa31LG10G11120 Aethionema arabicum HOM05D002744 ORTHO05D008989 9.7e-40 167.5 124 66.9
Hma1.2p1_0322F.1_g124790 Hydrangea macrophylla HOM05D002744 ORTHO05D008989 2.0e-32 143.3 153 51.0
SEGI_38813 Sequoiadendron giganteum HOM05D002744 ORTHO05D008989 6.9e-30 134.8 107 62.6
Psat5g130160 Pisum sativum HOM05D002744 ORTHO05D008989 1.0e-28 131.0 102 67.6
Sc10g0002800 Simmondsia chinensis HOM05D002744 ORTHO05D008989 1.1e-27 127.5 131 56.5
Mapoly0001s0439 Marchantia polymorpha HOM05D002744 ORTHO05D008989 4.7e-26 122.1 162 43.8
CDE01G0559 Ceratophyllum demersum HOM05D002744 ORTHO05D008989 2.3e-25 119.8 143 48.3
Pp3c8_1670 Physcomitrium patens HOM05D002744 ORTHO05D008989 1.4e-14 84.0 98 42.9
SMO147G0318 Selaginella moellendorffii HOM05D002744 ORTHO05D008989 1.3e-12 77.4 132 33.3
C06p23580 Brassica napus HOM05D002744 ORTHO05D008989 7.2e-11 71.6 49 63.3
Psat5g125520 Pisum sativum HOM05D002744 ORTHO05D008989 1.6e-10 70.5 52 63.5
CAN.G118.19 Capsicum annuum HOM05D002744 ORTHO05D008989 3.6e-10 69.3 50 68.0
Solyc06g050837.1 Solanum lycopersicum HOM05D002744 ORTHO05D008989 1.8e-06 57.0 47 55.3


User provided reference genes

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