Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 4.5e-242 840.9 434 100.0
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 8.3e-180 634.0 433 78.5
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 6.0e-154 548.1 428 71.5
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 9.5e-152 540.8 428 70.8
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 4.7e-151 538.5 421 71.5
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 1.9e-131 473.4 449 59.7
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 1.3e-129 467.2 444 60.8
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 5.3e-126 455.3 450 58.4
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 2.2e-124 449.9 429 61.1
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 4.2e-123 445.7 437 59.7
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 7.9e-122 441.4 419 58.7
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 1.5e-120 437.2 417 59.5
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 5.7e-120 435.3 447 56.4
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 9.6e-120 434.5 415 59.8
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 2.8e-119 433.0 461 53.8
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 2.6e-117 426.4 348 63.8
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 7.6e-117 424.9 461 54.0
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 1.7e-116 423.7 434 55.3
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 5.0e-116 422.2 418 56.0
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 2.5e-115 419.9 348 63.2
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 3.2e-115 419.5 489 51.3
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 6.1e-114 415.2 435 57.5
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 1.8e-113 413.7 397 58.7
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 1.8e-113 413.7 440 55.2
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 8.7e-113 411.4 457 54.7
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 2.5e-112 409.8 396 58.6
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 2.8e-111 406.4 401 59.1
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 3.7e-111 406.0 397 56.4
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 6.3e-111 405.2 396 58.8
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 8.2e-111 404.8 451 53.7
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 6.9e-110 401.7 430 53.0
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 6.9e-110 401.7 412 54.6
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 9.0e-110 401.4 424 53.8
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 9.0e-110 401.4 429 53.4
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 5.9e-109 398.7 387 57.1
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 7.7e-109 398.3 452 52.9
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 7.7e-109 398.3 396 56.3
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 1.3e-108 397.5 431 52.7
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 5.0e-108 395.6 393 56.2
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 1.1e-107 394.4 393 56.2
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 1.1e-107 394.4 435 54.5
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 1.9e-107 393.7 449 53.9
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 2.5e-107 393.3 386 57.5
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 2.5e-107 393.3 424 54.2
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 3.2e-107 392.9 406 56.4
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 4.2e-107 392.5 422 54.5
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 2.1e-106 390.2 371 57.4
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 2.7e-106 389.8 428 53.7
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 7.9e-106 388.3 409 55.3
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 5.1e-105 385.6 422 53.8
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 2.0e-104 383.6 403 55.3
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 7.4e-104 381.7 422 53.1
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 7.4e-104 381.7 379 54.6
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 9.7e-104 381.3 444 48.4
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 1.3e-103 380.9 403 52.9
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 1.3e-103 380.9 357 57.4
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 2.2e-103 380.2 421 53.7
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 2.8e-103 379.8 423 53.0
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 3.7e-103 379.4 522 46.6
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 6.3e-103 378.6 387 54.0
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 3.1e-102 376.3 547 44.6
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 3.1e-102 376.3 447 51.9
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 4.1e-102 375.9 540 45.0
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 1.2e-101 374.4 525 45.7
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 1.2e-101 374.4 425 50.4
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 2.0e-101 373.6 450 49.1
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 1.3e-100 370.9 430 51.6
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 1.3e-100 370.9 481 48.9
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 2.9e-100 369.8 422 51.9
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 2.9e-100 369.8 423 53.0
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 8.5e-100 368.2 551 43.0
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 2.1e-98 363.6 414 52.4
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 2.7e-98 363.2 320 59.7
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 2.7e-98 363.2 446 49.1
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 1.0e-97 361.3 429 49.7
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 3.9e-97 359.4 420 51.7
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 1.1e-96 357.8 309 59.2
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 4.4e-96 355.9 412 51.5
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 5.7e-96 355.5 428 50.0
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 5.7e-96 355.5 521 45.1
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 1.7e-95 354.0 448 48.0
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 1.8e-94 350.5 466 48.3
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 1.5e-93 347.4 431 49.0
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 2.6e-93 346.7 368 53.0
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 1.1e-91 341.3 432 48.4
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 9.4e-91 338.2 296 59.8
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 4.7e-90 335.9 423 50.1
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 7.4e-88 328.6 415 47.2
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 6.3e-87 325.5 365 49.6
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 2.9e-84 316.6 350 52.9
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 5.0e-84 315.8 264 59.5
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 2.3e-81 307.0 346 51.4
SEGI_25656 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 1.1e-78 298.1 378 45.8
HPP92_001013 Vanilla planifolia HOM05D005646 ORTHO05D006828 1.5e-75 287.7 250 58.8
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 1.2e-74 284.6 250 59.2
vmacro13731 Vaccinium macrocarpon HOM05D005646 ORTHO05D006828 2.0e-72 277.3 249 60.2
Zm00001eb347150 Zea mays HOM05D005646 ORTHO05D006828 2.9e-68 263.5 407 40.8
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 1.1e-67 261.5 350 47.4
Mapoly0066s0082 Marchantia polymorpha HOM05D005646 ORTHO05D006828 1.8e-62 244.2 257 53.3
SMO145G0178 Selaginella moellendorffii HOM05D005646 ORTHO05D006828 1.4e-57 228.0 241 48.1
Pp3c21_7940 Physcomitrium patens HOM05D005646 ORTHO05D006828 3.1e-57 226.9 384 39.3
Sc15g0003140 Simmondsia chinensis HOM05D005646 ORTHO05D006828 1.0e-52 211.8 257 45.9
GSVIVG01000664001 Vitis vinifera HOM05D005646 ORTHO05D006828 1.5e-51 208.0 170 63.5
AagrBONN_evm.TU.Sc2ySwM_228.261 Anthoceros agrestis HOM05D005646 ORTHO05D006828 5.6e-51 206.1 454 33.7
AL4G20430 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 6.8e-49 199.1 299 42.8
RcHm_v2.0_Chr4g0400611 Rosa chinensis HOM05D005646 ORTHO05D006828 1.3e-44 184.9 166 58.4
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 3.3e-43 180.3 218 48.6
Os05g0381500 Oryza sativa ssp. japonica HOM05D005646 ORTHO05D006828 1.2e-42 178.3 165 53.3
Glyma.18G124100 Glycine max HOM05D005646 ORTHO05D006828 4.4e-40 169.9 123 68.3
CBR_g29393 Chara braunii HOM05D005646 ORTHO05D006828 1.9e-38 164.5 218 42.2
PGSC0003DMG400000847 Solanum tuberosum HOM05D005646 ORTHO05D006828 4.6e-37 159.8 136 59.6
Cre13.g607900 Chlamydomonas reinhardtii HOM05D005646 ORTHO05D006828 1.7e-31 141.4 187 39.0
SalBow1G3971 Salvia bowleyana HOM05D005646 ORTHO05D006828 4.9e-31 139.8 344 34.9
RcHm_v2.0_Chr2g0154951 Rosa chinensis HOM05D005646 ORTHO05D006828 2.7e-29 134.0 128 56.2
PRCOL_00006924 Prasinoderma coloniale HOM05D005646 ORTHO05D006828 3.0e-28 130.6 195 40.5
Glyma.12G039666 Glycine max HOM05D005646 ORTHO05D006828 5.6e-27 126.3 112 59.8
AL4G20290 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 2.6e-24 117.5 97 60.8
RcHm_v2.0_Chr4g0400621 Rosa chinensis HOM05D005646 ORTHO05D006828 2.2e-23 114.4 88 62.5
PSO017G4843 Papaver somniferum HOM05D005646 ORTHO05D006828 8.4e-23 112.5 94 59.6
SEGI_07819 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 2.3e-20 104.4 90 60.0
SEGI_35855 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 2.3e-20 104.4 90 60.0
COL.COLO4_25675 Corchorus olitorius HOM05D005646 ORTHO05D006828 6.6e-20 102.8 64 75.0
arahy.Tifrunner.gnm1.ann1.7I4JN8 Arachis hypogaea HOM05D005646 ORTHO05D006828 2.1e-18 97.8 62 71.0
CARHR125840 Cardamine hirsuta HOM05D005646 ORTHO05D006828 2.1e-13 81.3 120 38.3
MCO02G103 Micromonas commoda HOM05D005646 ORTHO05D006828 2.7e-13 80.9 107 38.3
arahy.Tifrunner.gnm1.ann1.B52RT5 Arachis hypogaea HOM05D005646 ORTHO05D006828 6.7e-12 76.3 87 44.8
RcHm_v2.0_Chr1g0326961 Rosa chinensis HOM05D005646 ORTHO05D006828 1.9e-11 74.7 50 66.0
Glyma.12G039732 Glycine max HOM05D005646 ORTHO05D006828 9.6e-11 72.4 191 33.0
RcHm_v2.0_Chr4g0400631 Rosa chinensis HOM05D005646 ORTHO05D006828 1.1e-09 68.9 46 67.4
COL.COLO4_26597 Corchorus olitorius HOM05D000001 ORTHO05D010004 1.5e-08 65.1 70 52.9
GSVIVG01038299001 Vitis vinifera HOM05D005646 ORTHO05D006828 7.6e-08 62.8 44 72.7
COL.COLO4_08512 Corchorus olitorius HOM05D065443 ORTHO05D006828 1.4e-06 58.5 44 63.6
COL.COLO4_03873 Corchorus olitorius HOM05D065443 ORTHO05D160768 4.2e-06 57.0 32 81.2


User provided reference genes

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