Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G001400 Theobroma cacao HOM05D005798 ORTHO05D007269 3.8e-232 807.7 398 100.0
Duzib128G1323 Durio zibethinus HOM05D005798 ORTHO05D007269 1.3e-203 713.0 398 87.2
Gohir.A10G242600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 1.1e-183 646.7 399 81.7
Gorai.011G295600 Gossypium raimondii HOM05D005798 ORTHO05D007269 9.6e-183 643.7 400 82.0
Gohir.D10G254600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 1.8e-181 639.4 400 81.2
CiPaw.13G020800 Carya illinoinensis HOM05D005798 ORTHO05D007269 1.5e-175 619.8 397 76.3
QL04p025438 Quercus lobata HOM05D005798 ORTHO05D007269 2.9e-171 605.5 396 74.2
Ciclev10020482m.g Citrus clementina HOM05D005798 ORTHO05D007269 3.1e-165 585.5 398 72.1
Atru.chr5.52 Acer truncatum HOM05D005798 ORTHO05D007269 2.9e-163 578.9 398 71.4
Atru.chr5.24 Acer truncatum HOM05D005798 ORTHO05D007269 4.2e-162 575.1 398 70.9
Prupe.2G112300 Prunus persica HOM05D005798 ORTHO05D007269 4.6e-161 571.6 398 70.1
MD07G1086000 Malus domestica HOM05D005798 ORTHO05D007269 3.0e-160 568.9 400 70.5
Manes.05G060100 Manihot esculenta HOM05D005798 ORTHO05D007269 3.9e-160 568.5 391 72.4
MD02G1227400 Malus domestica HOM05D005798 ORTHO05D007269 5.1e-160 568.2 398 70.1
CSS0042045 Camellia sinensis var. sinensis HOM05D005798 ORTHO05D007269 1.3e-158 563.5 396 70.7
vmacro21093 Vaccinium macrocarpon HOM05D005798 ORTHO05D007269 4.8e-158 561.6 398 70.4
FAN26G0835 Fragaria x ananassa HOM05D005798 ORTHO05D007269 8.2e-158 560.8 398 67.8
FAN23G2651 Fragaria x ananassa HOM05D005798 ORTHO05D007269 4.1e-157 558.5 398 68.1
Phvul.005G016200 Phaseolus vulgaris HOM05D005798 ORTHO05D007269 9.0e-157 557.4 397 69.3
Potri.001G346900 Populus trichocarpa HOM05D005798 ORTHO05D007269 3.4e-156 555.4 392 69.6
FvH4_1g25731 Fragaria vesca HOM05D005798 ORTHO05D007269 4.5e-156 555.1 398 67.6
FAN28G0191 Fragaria x ananassa HOM05D005798 ORTHO05D007269 5.9e-156 554.7 398 66.8
RcHm_v2.0_Chr1g0343251 Rosa chinensis HOM05D005798 ORTHO05D007269 2.2e-155 552.7 400 67.8
Sabra16G0226600 Salix brachista HOM05D005798 ORTHO05D007269 1.9e-154 549.7 390 68.7
TWI59G0898 Tripterygium wilfordii HOM05D005798 ORTHO05D007269 1.2e-153 547.0 393 69.7
COL.COLO4_19318 Corchorus olitorius HOM05D005798 ORTHO05D007269 7.9e-153 544.3 313 84.3
VMungo1080G0989 Vigna mungo HOM05D005798 ORTHO05D007269 7.9e-153 544.3 397 67.3
CANSAT21G0894 Cannabis sativa HOM05D005798 ORTHO05D007269 1.8e-152 543.1 390 68.5
Cc02_g25760 Coffea canephora HOM05D005798 ORTHO05D007269 3.3e-151 538.9 389 67.9
Glyma.06G310400 Glycine max HOM05D005798 ORTHO05D007269 4.3e-151 538.5 394 67.3
Lj1g0019008 Lotus japonicus HOM05D005798 ORTHO05D007269 9.7e-151 537.3 397 65.0
Glyma.04G128400 Glycine max HOM05D005798 ORTHO05D007269 3.7e-150 535.4 398 66.8
PGR004G1878 Punica granatum HOM05D005798 ORTHO05D007269 1.1e-149 533.9 398 67.1
PGR004G0434 Punica granatum HOM05D005798 ORTHO05D007269 2.4e-149 532.7 398 66.8
Medtr0103s0100 Medicago truncatula HOM05D005798 ORTHO05D007269 1.5e-148 530.0 400 64.2
THA.LOC104817171 Tarenaya hassleriana HOM05D005798 ORTHO05D007269 2.6e-148 529.3 398 65.8
Ca_03850_v3 Cicer arietinum L. HOM05D005798 ORTHO05D007269 1.7e-147 526.6 400 65.0
Lalb_Chr19g0126311 Lupinus albus HOM05D005798 ORTHO05D007269 6.5e-147 524.6 397 65.2
arahy.Tifrunner.gnm1.ann1.1MA0KJ Arachis hypogaea HOM05D005798 ORTHO05D007269 5.5e-146 521.5 397 63.7
arahy.Tifrunner.gnm1.ann1.6FN2NF Arachis hypogaea HOM05D005798 ORTHO05D007269 5.5e-146 521.5 397 63.5
Psat3g172680 Pisum sativum HOM05D005798 ORTHO05D007269 1.2e-145 520.4 390 65.4
MELO3C006251.2 Cucumis melo HOM05D005798 ORTHO05D007269 3.6e-145 518.8 399 64.4
AUR62031252 Chenopodium quinoa HOM05D005798 ORTHO05D007269 1.0e-144 517.3 388 63.9
CsaV3_3G010280 Cucumis sativus L. HOM05D005798 ORTHO05D007269 1.4e-144 516.9 399 64.2
Nitab4.5_0013532g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 1.4e-144 516.9 399 64.7
AUR62027448 Chenopodium quinoa HOM05D005798 ORTHO05D007269 1.8e-144 516.5 387 63.6
Peaxi162Scf01124g00121 Petunia axillaris HOM05D005798 ORTHO05D007269 1.8e-144 516.5 400 64.8
Hund17139 Selenicereus undatus HOM05D005798 ORTHO05D007269 2.3e-144 516.2 390 65.9
ClCG05G002770 Citrullus lanatus HOM05D005798 ORTHO05D007269 4.4e-143 511.9 398 62.8
Nitab4.5_0009219g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 2.8e-142 509.2 389 65.6
CAN.G1480.2 Capsicum annuum HOM05D005798 ORTHO05D007269 4.8e-142 508.4 399 63.9
MSTRG.20650 Avicennia marina HOM05D005798 ORTHO05D007269 1.4e-141 506.9 390 63.8
Nn2g10726 Nelumbo nucifera HOM05D005798 ORTHO05D007269 2.4e-141 506.1 395 62.3
Sc26g0001830 Simmondsia chinensis HOM05D005798 ORTHO05D007269 4.1e-141 505.4 390 62.6
PGSC0003DMG400001703 Solanum tuberosum HOM05D005798 ORTHO05D007269 4.1e-141 505.4 389 64.3
Solyc01g088390.3 Solanum lycopersicum HOM05D005798 ORTHO05D007269 1.5e-140 503.4 389 63.2
EL10Ac8g19272 Beta vulgaris HOM05D005798 ORTHO05D007269 2.6e-140 502.7 386 63.0
Sopen01g035220 Solanum pennellii HOM05D005798 ORTHO05D007269 2.6e-140 502.7 389 63.5
Aa31LG1G26140 Aethionema arabicum HOM05D005798 ORTHO05D007269 5.0e-139 498.4 388 62.4
Sed0012756 Sechium edule HOM05D005798 ORTHO05D007269 2.5e-138 496.1 400 61.8
Eucgr.D01150 Eucalyptus grandis HOM05D005798 ORTHO05D007269 1.4e-136 490.3 397 61.0
Oeu024375.1 Olea europaea HOM05D005798 ORTHO05D007269 4.4e-135 485.3 374 65.0
Oeu024376.1 Olea europaea HOM05D005798 ORTHO05D007269 4.4e-135 485.3 374 65.0
Migut.B01472 Erythranthe guttata HOM05D005798 ORTHO05D007269 1.3e-134 483.8 391 62.7
PSO017G1219 Papaver somniferum HOM05D005798 ORTHO05D007269 2.8e-134 482.6 391 61.1
Lj7C553T5 Lonicera japonica HOM05D005798 ORTHO05D007269 8.2e-134 481.1 392 64.5
PSO782G4885 Papaver somniferum HOM05D005798 ORTHO05D007269 1.8e-133 479.9 391 60.6
ECA234G4178 Erigeron canadensis HOM05D005798 ORTHO05D007269 3.1e-133 479.2 385 62.1
AL4G43620 Arabidopsis lyrata HOM05D005798 ORTHO05D007269 1.2e-132 477.2 393 60.3
PSO063G7295 Papaver somniferum HOM05D005798 ORTHO05D007269 2.0e-132 476.5 401 60.1
HanXRQChr16g0519531 Helianthus annuus HOM05D005798 ORTHO05D007269 5.9e-132 474.9 392 62.2
Sp4g26670 Schrenkiella parvula HOM05D005798 ORTHO05D007269 5.0e-131 471.9 390 60.5
AT2G44580 Arabidopsis thaliana HOM05D005798 ORTHO05D007269 2.5e-130 469.5 393 60.1
BcaB02g08835 Brassica carinata HOM05D005798 ORTHO05D007269 9.4e-130 467.6 390 59.7
MBI05_g22048_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 2.1e-129 466.5 388 58.5
TPR.G30814 Trifolium pratense HOM05D005798 ORTHO05D007269 2.1e-129 466.5 345 66.4
CARHR139800 Cardamine hirsuta HOM05D005798 ORTHO05D007269 8.0e-129 464.5 384 59.6
BolC4t22185H Brassica oleracea HOM05D005798 ORTHO05D007269 5.2e-128 461.8 397 58.7
BcaC02g12292 Brassica carinata HOM05D005798 ORTHO05D007269 8.8e-128 461.1 389 59.6
C04p05550 Brassica napus HOM05D005798 ORTHO05D007269 8.8e-128 461.1 389 59.6
BraA05t19450Z Brassica rapa HOM05D005798 ORTHO05D007269 5.7e-127 458.4 390 59.5
A05p04740 Brassica napus HOM05D005798 ORTHO05D007269 9.7e-127 457.6 390 59.2
Carub.0004s2713 Capsella rubella HOM05D005798 ORTHO05D007269 9.7e-127 457.6 394 59.4
Ah.14g086050 Amaranthus hybridus HOM05D005798 ORTHO05D007269 9.1e-125 451.1 390 58.5
Thhalv10001723m.g Eutrema salsugineum HOM05D005798 ORTHO05D007269 4.2e-122 442.2 367 60.5
Actinidia33294 Actinidia chinensis HOM05D005798 ORTHO05D007269 3.0e-120 436.0 364 61.0
unitig_52.g17377 Utricularia gibba HOM05D005798 ORTHO05D007269 4.0e-120 435.6 393 56.2
Os05g0119600 Oryza sativa ssp. japonica HOM05D005798 ORTHO05D007269 1.1e-117 427.6 374 56.1
HPP92_011679 Vanilla planifolia HOM05D005798 ORTHO05D007269 1.6e-116 423.7 390 55.6
Zm00001eb112030 Zea mays HOM05D005798 ORTHO05D007269 2.3e-115 419.9 390 54.4
SEGI_02869 Sequoiadendron giganteum HOM05D005798 ORTHO05D007269 1.4e-112 410.6 395 50.6
CDE06G2636 Ceratophyllum demersum HOM05D005798 ORTHO05D007269 4.1e-109 399.1 360 54.2
SGA_v2.0_scaffold17G08178 Striga asiatica HOM05D005798 ORTHO05D007269 1.6e-105 387.1 352 57.4
Nn1g00612 Nelumbo nucifera HOM05D005798 ORTHO05D007269 2.1e-105 386.7 276 65.9
Rhsim01G0145000 Rhododendron simsii HOM05D005798 ORTHO05D007269 3.2e-101 372.9 389 53.0
Cpa.g.sc3387.1 Carica papaya HOM05D005798 ORTHO05D007269 5.4e-101 372.1 246 74.4
Dinv43575 Davidia involucrata HOM05D005798 ORTHO05D007269 8.1e-97 358.2 263 67.3
ATR0585G014 Amborella trichopoda HOM05D005798 ORTHO05D007269 5.2e-96 355.5 402 48.8
TAR375G0847 Trochodendron aralioides HOM05D005798 ORTHO05D007269 1.6e-89 334.0 266 61.3
Pp3c5_22720 Physcomitrium patens HOM05D005798 ORTHO05D007269 3.6e-89 332.8 393 43.0
GSVIVG01018417001 Vitis vinifera HOM05D005798 ORTHO05D007269 5.1e-83 312.4 191 78.0
AagrBONN_evm.TU.Sc2ySwM_344.2100 Anthoceros agrestis HOM05D005798 ORTHO05D007269 1.5e-82 310.8 380 43.4
Mapoly0001s0452 Marchantia polymorpha HOM05D005798 ORTHO05D007269 4.7e-81 305.8 400 41.8
Lsat_1_v5_gn_4_46040 Lactuca sativa HOM05D005798 ORTHO05D007269 2.1e-68 263.8 192 66.7
Actinidia21608 Actinidia chinensis HOM05D005798 ORTHO05D007269 2.5e-66 256.9 161 73.9
Nn3g19112 Nelumbo nucifera HOM05D005798 ORTHO05D007269 4.5e-63 246.1 247 51.0
Haze_02923 Corylus avellana HOM05D005798 ORTHO05D007269 8.4e-62 241.9 194 64.9
Prupe.2G112400 Prunus persica HOM05D005798 ORTHO05D007269 5.8e-55 219.2 198 58.1
Nn1g07358 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.7e-54 217.6 197 56.9
Peaxi162Scf00417g00029 Petunia axillaris HOM05D005798 ORTHO05D007269 4.9e-54 216.1 232 49.1
Nn3g19416 Nelumbo nucifera HOM05D005798 ORTHO05D007269 3.9e-51 206.5 160 63.1
GSVIVG01018418001 Vitis vinifera HOM05D005798 ORTHO05D007269 1.8e-48 197.6 153 66.0
Prupe.2G112500 Prunus persica HOM05D005798 ORTHO05D007269 1.4e-45 188.0 149 63.1
Dinv43574 Davidia involucrata HOM05D005798 ORTHO05D007269 2.5e-45 187.2 109 80.7
Nn1g07357 Nelumbo nucifera HOM05D005798 ORTHO05D007269 4.3e-42 176.4 135 60.0
Cre16.g684155 Chlamydomonas reinhardtii HOM05D005798 ORTHO05D007269 5.7e-42 176.0 357 31.9
Atru.chr5.133 Acer truncatum HOM05D005798 ORTHO05D007269 9.7e-42 175.3 137 64.2
CBR_g39622 Chara braunii HOM05D000017 ORTHO05D000013 1.6e-41 174.5 427 31.4
CAN.G195.32 Capsicum annuum HOM05D005798 ORTHO05D007269 4.1e-40 169.9 169 52.1
Atru.chr5.134 Acer truncatum HOM05D005798 ORTHO05D007269 1.3e-38 164.9 93 81.7
HanXRQChr12g0366931 Helianthus annuus HOM05D005798 ORTHO05D007269 1.7e-38 164.5 243 40.7
CAN.G74.39 Capsicum annuum HOM05D005798 ORTHO05D007269 3.6e-36 156.8 150 56.0
PRCOL_00005399 Prasinoderma coloniale HOM05D005798 ORTHO05D007269 2.3e-35 154.1 370 31.4
CAN.G74.38 Capsicum annuum HOM05D005798 ORTHO05D007269 3.8e-30 136.7 93 73.1
Nn3g19415 Nelumbo nucifera HOM05D005798 ORTHO05D007269 3.6e-28 130.2 98 63.3
HPP92_011700 Vanilla planifolia HOM05D005798 ORTHO05D007269 7.7e-23 112.5 224 33.9
HanXRQChr07g0198081 Helianthus annuus HOM05D005798 ORTHO05D007269 1.9e-21 107.8 197 35.5
EL10Ac6g13432 Beta vulgaris HOM05D005798 ORTHO05D007269 8.0e-20 102.4 84 52.4
MCO12G177 Micromonas commoda HOM05D005798 ORTHO05D007269 1.8e-19 101.3 458 24.2
TAR375G0441 Trochodendron aralioides HOM05D005798 ORTHO05D007269 4.7e-12 76.6 54 70.4
MBI14_g08084_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 6.1e-12 76.3 85 43.5
CAN.G195.33 Capsicum annuum HOM05D005798 ORTHO05D007269 4.1e-08 63.5 72 50.0
HanXRQChr11g0349311 Helianthus annuus HOM05D000428 ORTHO05D011602 7.7e-07 59.3 94 42.6


User provided reference genes

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