Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G366900 Theobroma cacao HOM05D001339 ORTHO05D002998 1.2e-25 119.0 57 100.0
Sp6g32610 Schrenkiella parvula HOM05D001339 ORTHO05D002998 5.9e-09 63.5 33 90.9
Duzib192G0625 Durio zibethinus HOM05D001339 ORTHO05D002998 7.7e-09 63.2 33 90.9
Thecc.01G000200 Theobroma cacao HOM05D001339 ORTHO05D002998 7.7e-09 63.2 33 90.9
BcaC03g13337 Brassica carinata HOM05D001339 ORTHO05D002998 1.3e-08 62.4 33 87.9
C02p04700 Brassica napus HOM05D000238 ORTHO05D002998 1.3e-08 62.4 33 87.9
BolC2t06430H Brassica oleracea HOM05D001339 ORTHO05D002998 1.3e-08 62.4 33 87.9
BraA02t05056Z Brassica rapa HOM05D001339 ORTHO05D002998 1.3e-08 62.4 33 87.9
AL6G21430 Arabidopsis lyrata HOM05D001339 ORTHO05D002998 1.7e-08 62.0 33 84.8
AT5G10860 Arabidopsis thaliana HOM05D001339 ORTHO05D002998 1.7e-08 62.0 33 84.8
Carub.0006s0936 Capsella rubella HOM05D001339 ORTHO05D002998 1.7e-08 62.0 33 84.8
Ca_05734_v3 Cicer arietinum L. HOM05D001339 ORTHO05D002998 2.2e-08 61.6 33 84.8
Duzib213G1068 Durio zibethinus HOM05D001339 ORTHO05D002998 2.2e-08 61.6 33 87.9
Haze_07069 Corylus avellana HOM05D001339 ORTHO05D002998 2.9e-08 61.2 33 81.8
Haze_07070 Corylus avellana HOM05D001339 ORTHO05D002998 2.9e-08 61.2 33 81.8
Lalb_Chr18g0053981 Lupinus albus HOM05D001339 ORTHO05D002998 3.8e-08 60.8 33 84.8
Lalb_Chr20g0117221 Lupinus albus HOM05D001339 ORTHO05D002998 3.8e-08 60.8 33 84.8
Manes.02G210000 Manihot esculenta HOM05D001339 ORTHO05D002998 5.0e-08 60.5 33 81.8
Sed0008479 Sechium edule HOM05D001339 ORTHO05D002998 5.0e-08 60.5 33 81.8
Thhalv10014695m.g Eutrema salsugineum HOM05D001339 ORTHO05D002998 6.5e-08 60.1 33 84.8
Glyma.02G238700 Glycine max HOM05D001339 ORTHO05D002998 6.5e-08 60.1 33 81.8
Nn7g37404 Nelumbo nucifera HOM05D001339 ORTHO05D002998 6.5e-08 60.1 33 81.8
Aa31LG3G16250 Aethionema arabicum HOM05D001339 ORTHO05D002998 8.5e-08 59.7 33 84.8
ECA248G2863 Erigeron canadensis HOM05D001339 ORTHO05D002998 8.5e-08 59.7 33 81.8
HanXRQChr01g0013431 Helianthus annuus HOM05D001339 ORTHO05D002998 8.5e-08 59.7 33 81.8
Medtr5g076080 Medicago truncatula HOM05D001339 ORTHO05D002998 8.5e-08 59.7 33 81.8
TPR.G15401 Trifolium pratense HOM05D001339 ORTHO05D002998 8.5e-08 59.7 33 81.8
arahy.Tifrunner.gnm1.ann1.5N4VNG Arachis hypogaea HOM05D001339 ORTHO05D002998 1.1e-07 59.3 33 78.8
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 1.1e-07 59.3 33 81.8
Lalb_Chr15g0085501 Lupinus albus HOM05D001339 ORTHO05D002998 1.1e-07 59.3 33 81.8
Prupe.6G037200 Prunus persica HOM05D001339 ORTHO05D002998 1.1e-07 59.3 33 78.8
BcaC04g19279 Brassica carinata HOM05D001339 ORTHO05D002998 1.4e-07 58.9 33 81.8
A10p26790 Brassica napus HOM05D000238 ORTHO05D001043 1.4e-07 58.9 33 81.8
C09p65930 Brassica napus HOM05D000238 ORTHO05D002998 1.4e-07 58.9 33 81.8
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 1.4e-07 58.9 33 81.8
CiPaw.14G047200 Carya illinoinensis HOM05D001339 ORTHO05D002998 1.4e-07 58.9 33 81.8
Ciclev10003449m.g Citrus clementina HOM05D001339 ORTHO05D002998 1.4e-07 58.9 33 78.8
Lalb_Chr10g0103911 Lupinus albus HOM05D001339 ORTHO05D002998 1.4e-07 58.9 33 78.8
Sed0005884 Sechium edule HOM05D001339 ORTHO05D002998 1.4e-07 58.9 33 78.8
Aqoxy6G00003 Aquilegia oxysepala HOM05D001339 ORTHO05D002998 1.9e-07 58.5 33 81.8
MSTRG.12726 Avicennia marina HOM05D001339 ORTHO05D002998 1.9e-07 58.5 33 78.8
ClCG02G018900 Citrullus lanatus HOM05D001339 ORTHO05D002998 1.9e-07 58.5 33 81.8
Cc01_g15650 Coffea canephora HOM05D001339 ORTHO05D002998 1.9e-07 58.5 33 78.8
MELO3C019601.2 Cucumis melo HOM05D001339 ORTHO05D002998 1.9e-07 58.5 33 81.8
Migut.D00782 Erythranthe guttata HOM05D001339 ORTHO05D002998 1.9e-07 58.5 33 78.8
Migut.N00697 Erythranthe guttata HOM05D001339 ORTHO05D002998 1.9e-07 58.5 33 78.8
FvH4_3g41290 Fragaria vesca HOM05D001339 ORTHO05D002998 1.9e-07 58.5 33 78.8
FAN11G1411 Fragaria x ananassa HOM05D001339 ORTHO05D002998 1.9e-07 58.5 33 78.8
FAN16G0641 Fragaria x ananassa HOM05D001339 ORTHO05D002998 1.9e-07 58.5 33 78.8
FAN21G3752 Fragaria x ananassa HOM05D001339 ORTHO05D002998 1.9e-07 58.5 33 78.8
FAN25G0793 Fragaria x ananassa HOM05D001339 ORTHO05D002998 1.9e-07 58.5 33 78.8
Gohir.A13G125200 Gossypium hirsutum HOM05D001339 ORTHO05D002998 1.9e-07 58.5 33 84.8
HanXRQChr08g0231041 Helianthus annuus HOM05D001339 ORTHO05D002998 1.9e-07 58.5 33 81.8
Peaxi162Scf00293g00510 Petunia axillaris HOM05D001339 ORTHO05D002998 1.9e-07 58.5 33 78.8
RcHm_v2.0_Chr5g0074091 Rosa chinensis HOM05D001339 ORTHO05D002998 1.9e-07 58.5 33 78.8
unitig_22.g5199 Utricularia gibba HOM05D001339 ORTHO05D002998 1.9e-07 58.5 33 81.8
CAN.G3.17 Capsicum annuum HOM05D001339 ORTHO05D002998 2.5e-07 58.2 33 78.8
Cpa.g.sc70.24 Carica papaya HOM05D001339 ORTHO05D002998 2.5e-07 58.2 33 78.8
DCAR_018596 Daucus carota HOM05D001339 ORTHO05D002998 2.5e-07 58.2 33 75.8
Glyma.14G207600 Glycine max HOM05D001339 ORTHO05D002998 2.5e-07 58.2 33 81.8
Hma1.2p1_1631F.1_g294600 Hydrangea macrophylla HOM05D001339 ORTHO05D002998 2.5e-07 58.2 33 75.8
Nitab4.5_0004383g0020 Nicotiana tabacum HOM05D001339 ORTHO05D002998 2.5e-07 58.2 33 78.8
Phvul.008G243300 Phaseolus vulgaris HOM05D001339 ORTHO05D002998 2.5e-07 58.2 33 78.8
Solyc09g018750.3 Solanum lycopersicum HOM05D001339 ORTHO05D002998 2.5e-07 58.2 33 78.8
Sopen09g012290 Solanum pennellii HOM05D001339 ORTHO05D002998 2.5e-07 58.2 33 78.8
PGSC0003DMG400020298 Solanum tuberosum HOM05D001339 ORTHO05D002998 2.5e-07 58.2 33 78.8
VMungo0647G2108 Vigna mungo HOM05D001339 ORTHO05D002998 2.5e-07 58.2 33 78.8
CANSAT54G1115 Cannabis sativa HOM05D001339 ORTHO05D002998 3.2e-07 57.8 33 78.8
CiPaw.13G059200 Carya illinoinensis HOM05D001339 ORTHO05D002998 3.2e-07 57.8 33 81.8
PSO357G0408 Papaver somniferum HOM05D001339 ORTHO05D002998 3.2e-07 57.8 33 78.8
AUR62008631 Chenopodium quinoa HOM05D001339 ORTHO05D002998 4.2e-07 57.4 33 78.8
AUR62033140 Chenopodium quinoa HOM05D001339 ORTHO05D002998 4.2e-07 57.4 33 78.8
ECA247G0838 Erigeron canadensis HOM05D001339 ORTHO05D002998 4.2e-07 57.4 33 78.8
MBI18_g38874_MAGBIO Magnolia biondii HOM05D001339 ORTHO05D002998 4.2e-07 57.4 33 78.8
CDE05G2195 Ceratophyllum demersum HOM05D001339 ORTHO05D002998 5.5e-07 57.0 33 75.8
CDE11G0548 Ceratophyllum demersum HOM05D001339 ORTHO05D002998 5.5e-07 57.0 33 75.8
CsaV3_6G013290 Cucumis sativus L. HOM05D001339 ORTHO05D002998 5.5e-07 57.0 33 81.8
Eucgr.J03199 Eucalyptus grandis HOM05D001339 ORTHO05D002998 5.5e-07 57.0 33 78.8
Eucgr.L01179 Eucalyptus grandis HOM05D001339 ORTHO05D002998 5.5e-07 57.0 33 78.8
Gohir.D13G128900 Gossypium hirsutum HOM05D001339 ORTHO05D002998 5.5e-07 57.0 33 81.8
Lsat_1_v5_gn_9_15561 Lactuca sativa HOM05D001339 ORTHO05D002998 5.5e-07 57.0 33 78.8
LjContig00141g0017332 Lotus japonicus HOM05D001339 ORTHO05D002998 5.5e-07 57.0 33 78.8
MD11G1048200 Malus domestica HOM05D001339 ORTHO05D002998 5.5e-07 57.0 33 78.8
Nitab4.5_0000539g0040 Nicotiana tabacum HOM05D001339 ORTHO05D002998 5.5e-07 57.0 33 75.8
Psat2g048800 Pisum sativum HOM05D001339 ORTHO05D002998 5.5e-07 57.0 33 78.8
ATR0796G115 Amborella trichopoda HOM05D001339 ORTHO05D002998 7.2e-07 56.6 33 81.8
EL10Ac7g17508 Beta vulgaris HOM05D001339 ORTHO05D002998 7.2e-07 56.6 33 78.8
Oeu034604.1 Olea europaea HOM05D001339 ORTHO05D002998 7.2e-07 56.6 33 75.8
THA.LOC104799019 Tarenaya hassleriana HOM05D001339 ORTHO05D002998 7.2e-07 56.6 33 78.8
Ah.15g093230 Amaranthus hybridus HOM05D000070 ORTHO05D003837 9.4e-07 56.2 33 75.8
MSTRG.17940 Avicennia marina HOM05D001339 ORTHO05D002998 9.4e-07 56.2 33 75.8
PGR102G0880 Punica granatum HOM05D001339 ORTHO05D002998 9.4e-07 56.2 33 75.8
SalBow2G0190 Salvia bowleyana HOM05D001339 ORTHO05D002998 9.4e-07 56.2 33 72.7
vmacro02854 Vaccinium macrocarpon HOM05D001339 ORTHO05D002998 9.4e-07 56.2 33 75.8
Cfa018684 Carpinus fangiana HOM05D001339 ORTHO05D002998 1.2e-06 55.8 33 75.8
Hma1.2p1_0161F.1_g071920 Hydrangea macrophylla HOM05D001339 ORTHO05D002998 1.2e-06 55.8 33 75.8
HPP92_011045 Vanilla planifolia HOM05D001339 ORTHO05D002998 1.2e-06 55.8 33 75.8
arahy.Tifrunner.gnm1.ann1.ME03Z4 Arachis hypogaea HOM05D001339 ORTHO05D002998 1.6e-06 55.5 33 75.8
CSS0023896 Camellia sinensis var. sinensis HOM05D001339 ORTHO05D002998 1.6e-06 55.5 33 75.8
CARHR202420 Cardamine hirsuta HOM05D001339 ORTHO05D002998 1.6e-06 55.5 33 72.7
Manes.18G121800 Manihot esculenta HOM05D001339 ORTHO05D002998 1.6e-06 55.5 33 75.8
PSO170G0342 Papaver somniferum HOM05D001339 ORTHO05D002998 2.1e-06 55.1 33 75.8
Hund18151 Selenicereus undatus HOM05D001339 ORTHO05D002998 2.1e-06 55.1 33 72.7
GSVIVG01024516001 Vitis vinifera HOM05D001339 ORTHO05D002998 2.1e-06 55.1 33 75.8
Dinv28769 Davidia involucrata HOM05D001339 ORTHO05D003609 2.7e-06 54.7 33 69.7
QL01p023409 Quercus lobata HOM05D001339 ORTHO05D002998 2.7e-06 54.7 33 75.8
THA.LOC104814988 Tarenaya hassleriana HOM05D001339 ORTHO05D002998 2.7e-06 54.7 33 78.8
unitig_0.g2154 Utricularia gibba HOM05D001339 ORTHO05D002998 2.7e-06 54.7 33 72.7
Lj2A1108T32 Lonicera japonica HOM05D001339 ORTHO05D002998 3.6e-06 54.3 33 72.7
Pp3c5_24660 Physcomitrium patens HOM05D001339 ORTHO05D002998 3.6e-06 54.3 33 72.7
Sabra13G0129100 Salix brachista HOM05D001339 ORTHO05D002998 3.6e-06 54.3 33 72.7
SGA_v2.0_scaffold1311G53909 Striga asiatica HOM05D001339 ORTHO05D002998 3.6e-06 54.3 33 72.7
Ah.08g213050 Amaranthus hybridus HOM05D000070 ORTHO05D003837 4.7e-06 53.9 33 75.8
CSS0045685 Camellia sinensis var. sinensis HOM05D001339 ORTHO05D002998 4.7e-06 53.9 33 72.7
Nn1g09382 Nelumbo nucifera HOM05D001339 ORTHO05D002998 4.7e-06 53.9 33 72.7
Potri.013G161500 Populus trichocarpa HOM05D001339 ORTHO05D002998 4.7e-06 53.9 33 72.7
Potri.017G000100 Populus trichocarpa HOM05D001339 ORTHO05D002998 6.1e-06 53.5 33 72.7
unitig_747.g21435 Utricularia gibba HOM05D001339 ORTHO05D002998 6.1e-06 53.5 33 69.7


User provided reference genes

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