Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 1.7e-108 396.0 196 100.0
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 1.1e-83 313.5 203 77.3
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 4.0e-81 305.1 199 77.4
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 1.7e-79 299.7 198 75.8
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 3.7e-71 271.9 199 71.4
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 2.7e-69 265.8 195 71.3
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 9.5e-67 257.3 169 76.9
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 2.3e-65 252.7 159 76.7
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 8.9e-65 250.8 168 73.2
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 1.5e-64 250.0 169 71.6
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 2.0e-64 249.6 167 73.7
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 2.6e-64 249.2 156 76.9
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 2.6e-64 249.2 156 76.3
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 1.3e-63 246.9 179 69.8
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 1.3e-63 246.9 153 78.4
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 1.7e-63 246.5 158 77.2
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 2.2e-63 246.1 169 71.0
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 2.2e-63 246.1 210 61.9
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 2.9e-63 245.7 167 72.5
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 2.9e-63 245.7 215 61.4
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.4e-62 243.4 175 69.7
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 3.2e-62 242.3 164 69.5
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.2e-61 240.4 165 72.1
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 1.6e-61 240.0 171 70.2
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 3.5e-61 238.8 170 68.8
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 3.5e-61 238.8 170 68.8
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 3.5e-61 238.8 156 72.4
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 7.8e-61 237.7 155 72.3
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 7.8e-61 237.7 151 74.2
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 1.7e-60 236.5 165 67.3
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 1.7e-60 236.5 165 67.3
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 3.0e-60 235.7 151 73.5
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 3.9e-60 235.3 168 68.5
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 5.1e-60 235.0 169 66.3
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 6.6e-60 234.6 178 66.9
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 8.6e-60 234.2 182 65.4
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 1.5e-59 233.4 168 68.5
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 1.9e-59 233.0 169 67.5
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 3.3e-59 232.3 193 61.1
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 3.3e-59 232.3 201 64.2
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 4.3e-59 231.9 174 67.2
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 5.6e-59 231.5 175 68.6
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 5.6e-59 231.5 213 58.7
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 9.5e-59 230.7 193 61.1
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 9.5e-59 230.7 193 62.7
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.2e-58 230.3 203 59.6
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 3.6e-58 228.8 192 62.0
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 4.7e-58 228.4 178 64.6
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 4.7e-58 228.4 175 66.3
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 4.7e-58 228.4 175 68.6
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 8.1e-58 227.6 168 69.0
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 4.0e-57 225.3 159 68.6
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 8.9e-57 224.2 192 63.0
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.5e-56 223.4 165 67.3
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 2.0e-56 223.0 174 66.1
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 2.6e-56 222.6 158 70.9
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 9.9e-56 220.7 159 71.1
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 2.9e-55 219.2 153 65.4
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 4.9e-55 218.4 178 64.6
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 4.2e-54 215.3 158 67.7
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 4.2e-54 215.3 158 67.7
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 5.4e-54 214.9 178 62.9
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 5.4e-54 214.9 155 69.7
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 3.5e-53 212.2 168 64.9
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 6.0e-53 211.5 156 66.7
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 1.3e-52 210.3 153 69.3
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 8.7e-52 207.6 233 51.1
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.1e-51 207.2 159 67.9
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 1.1e-51 207.2 177 59.9
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 7.3e-51 204.5 157 64.3
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 1.6e-50 203.4 158 60.1
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 2.1e-50 203.0 171 62.0
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 1.4e-49 200.3 207 53.1
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 1.8e-49 199.9 168 63.1
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 5.3e-49 198.4 157 63.7
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 6.9e-49 198.0 180 60.6
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 4.4e-48 195.3 151 62.9
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 4.4e-48 195.3 159 60.4
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 3.8e-47 192.2 122 78.7
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 4.9e-47 191.8 151 62.3
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 6.4e-47 191.4 119 74.8
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 8.4e-47 191.0 184 54.9
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 8.4e-47 191.0 192 55.7
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.1e-46 190.7 157 58.6
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 1.1e-46 190.7 158 65.2
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 3.2e-46 189.1 156 60.9
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 7.1e-46 188.0 162 58.0
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 7.1e-46 188.0 170 56.5
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 1.2e-45 187.2 161 60.2
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 1.2e-45 187.2 114 80.7
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 2.1e-45 186.4 119 75.6
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 2.7e-45 186.0 155 61.9
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 2.7e-45 186.0 150 61.3
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 3.5e-45 185.7 114 79.8
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 4.6e-45 185.3 168 55.4
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 7.8e-45 184.5 121 73.6
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 1.7e-44 183.3 166 60.2
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 2.3e-44 183.0 155 61.3
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 3.0e-44 182.6 115 75.7
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 1.1e-43 180.6 153 58.8
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 1.1e-43 180.6 172 55.2
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 1.9e-43 179.9 114 78.1
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 1.9e-43 179.9 113 77.9
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 2.5e-43 179.5 119 70.6
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 3.3e-43 179.1 153 60.8
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 4.3e-43 178.7 119 72.3
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 4.3e-43 178.7 112 76.8
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 4.3e-43 178.7 116 75.0
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 7.3e-43 177.9 114 75.4
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 2.8e-42 176.0 114 75.4
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 8.1e-42 174.5 162 54.9
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 1.4e-41 173.7 169 54.4
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 3.1e-41 172.6 112 75.0
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 5.3e-41 171.8 110 76.4
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 9.0e-41 171.0 168 53.6
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 1.5e-40 170.2 150 57.3
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 3.8e-39 165.6 160 53.8
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 3.8e-39 165.6 131 63.4
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 4.9e-39 165.2 112 70.5
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 8.4e-39 164.5 158 57.0
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 1.2e-37 160.6 153 52.9
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 2.7e-37 159.5 121 61.2
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 6.7e-36 154.8 114 65.8
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 6.7e-36 154.8 144 54.2
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 5.6e-35 151.8 165 54.5
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 4.5e-32 142.1 96 70.8
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 3.8e-31 139.0 160 52.5
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 4.9e-31 138.7 141 56.0
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 1.4e-30 137.1 167 48.5
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 1.2e-29 134.0 77 79.2
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 7.4e-27 124.8 112 54.5
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 9.6e-27 124.4 111 57.7
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 2.6e-24 116.3 70 78.6
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 2.6e-24 116.3 118 55.9
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.3e-23 114.0 157 43.3
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 8.4e-23 111.3 69 76.8
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 4.2e-22 109.0 77 63.6
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 7.1e-22 108.2 70 74.3
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 4.6e-21 105.5 78 67.9
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 7.9e-21 104.8 125 51.2
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.0e-20 104.4 71 70.4
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 3.9e-20 102.4 85 61.2
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 6.7e-20 101.7 147 42.9
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 1.1e-19 100.9 121 51.2
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 2.4e-17 93.2 149 38.9
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 1.1e-14 84.3 62 66.1
Hund24328 Selenicereus undatus HOM05D004274 ORTHO05D004980 1.2e-13 80.9 49 71.4
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 1.6e-13 80.5 55 70.9
ClCG10G000760 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.0e-12 77.8 69 59.4
Potri.019G133101 Populus trichocarpa HOM05D004274 ORTHO05D004980 5.1e-12 75.5 55 61.8
Dinv28765 Davidia involucrata HOM05D004274 ORTHO05D004980 2.0e-11 73.6 55 63.6
HPP92_015443 Vanilla planifolia HOM05D004274 ORTHO05D004980 1.7e-10 70.5 44 70.5
MSTRG.21280 Avicennia marina HOM05D004274 ORTHO05D004980 3.7e-10 69.3 50 60.0
EL10Ac9g22872 Beta vulgaris HOM05D007938 ORTHO05D009929 3.7e-10 69.3 79 45.6
CDE08G1045 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 8.2e-10 68.2 69 49.3
RcHm_v2.0_Chr5g0074021 Rosa chinensis HOM05D004274 ORTHO05D004980 1.1e-09 67.8 46 65.2
Solyc09g018650.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 1.4e-09 67.4 54 59.3
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 1.8e-09 67.0 44 65.9
Sabra19G0129300 Salix brachista HOM05D004274 ORTHO05D004980 1.8e-09 67.0 52 61.5
QL01p023462 Quercus lobata HOM05D004274 ORTHO05D004980 3.1e-09 66.2 83 48.2
MSTRG.12721 Avicennia marina HOM05D004274 ORTHO05D004980 9.1e-09 64.7 38 71.1
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.2e-08 64.3 48 58.3
Actinidia34514 Actinidia chinensis HOM05D004274 ORTHO05D004980 2.0e-08 63.5 41 68.3
MSTRG.18523 Avicennia marina HOM05D004274 ORTHO05D004980 7.7e-08 61.6 53 52.8
RcHm_v2.0_Chr1g0353171 Rosa chinensis HOM05D004274 ORTHO05D004980 1.0e-07 61.2 90 41.1
MD03G1046400 Malus domestica HOM05D004274 ORTHO05D004980 1.7e-07 60.5 41 63.4
Mapoly0107s0014 Marchantia polymorpha HOM05D004274 ORTHO05D004980 6.5e-07 58.5 71 45.1
HanXRQChr08g0231131 Helianthus annuus HOM05D004274 ORTHO05D004980 1.4e-06 57.4 40 65.0


User provided reference genes

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