Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G364100 Theobroma cacao HOM05D007641 ORTHO05D007630 0.0e+00 1634.4 844 100.0
Duzib168G1492 Durio zibethinus HOM05D007641 ORTHO05D007630 4.6e-267 924.9 851 63.0
COL.COLO4_11217 Corchorus olitorius HOM05D007641 ORTHO05D007630 3.7e-208 729.2 713 57.2
Gohir.A08G000032 Gossypium hirsutum HOM05D007641 ORTHO05D007630 1.9e-204 716.8 791 52.5
Gorai.004G000600 Gossypium raimondii HOM05D007641 ORTHO05D007630 4.8e-192 675.6 783 50.2
Gohir.D12G000401 Gossypium hirsutum HOM05D007641 ORTHO05D007630 2.7e-190 669.8 702 54.4
Gohir.D08G007350 Gossypium hirsutum HOM05D007641 ORTHO05D007630 8.8e-186 654.8 744 50.9
Gorai.012G000300 Gossypium raimondii HOM05D007641 ORTHO05D007630 4.4e-169 599.4 544 60.1
QL01p024477 Quercus lobata HOM05D007641 ORTHO05D007630 4.1e-151 539.7 819 43.1
Atru.chr10.2293 Acer truncatum HOM05D007641 ORTHO05D007630 1.9e-148 530.8 853 44.8
Gohir.1Z049529 Gossypium hirsutum HOM05D007641 ORTHO05D007630 3.3e-148 530.0 457 61.5
Gohir.1Z049434 Gossypium hirsutum HOM05D007641 ORTHO05D007630 2.6e-145 520.4 533 55.3
CiPaw.13G063300 Carya illinoinensis HOM05D007641 ORTHO05D007630 2.7e-134 483.8 833 42.0
Dinv28733 Davidia involucrata HOM05D007641 ORTHO05D007630 3.5e-134 483.4 863 43.0
Potri.013G157800 Populus trichocarpa HOM05D007641 ORTHO05D007630 6.2e-115 419.5 860 40.5
Actinidia34497 Actinidia chinensis HOM05D007641 ORTHO05D007630 3.2e-103 380.6 868 37.7
Sabra13G0126700 Salix brachista HOM05D007641 ORTHO05D002352 8.7e-101 372.5 843 35.7
Haze_24474 Corylus avellana HOM05D007641 ORTHO05D007630 5.7e-100 369.8 602 39.9
RcHm_v2.0_Chr5g0073231 Rosa chinensis HOM05D007641 ORTHO05D007630 6.9e-98 362.8 868 36.6
TWI79G1607 Tripterygium wilfordii HOM05D007641 ORTHO05D007630 8.8e-93 345.9 782 37.1
Manes.02G212232 Manihot esculenta HOM05D007641 ORTHO05D007630 2.9e-80 304.3 764 34.7
FAN11G1956 Fragaria x ananassa HOM05D007641 ORTHO05D007630 4.2e-79 300.4 831 33.9
vmacro14640 Vaccinium macrocarpon HOM05D007641 ORTHO05D007630 2.0e-76 291.6 703 33.6
Prupe.6G040800 Prunus persica HOM05D007641 ORTHO05D007630 5.7e-76 290.0 859 34.3
Rhsim01G0243500 Rhododendron simsii HOM05D007641 ORTHO05D007630 2.2e-72 278.1 724 32.6
FAN25G3378 Fragaria x ananassa HOM05D007641 ORTHO05D007630 7.2e-71 273.1 847 33.8
FAN16G1217 Fragaria x ananassa HOM05D007641 ORTHO05D007630 4.7e-70 270.4 793 34.7
FvH4_3g40550 Fragaria vesca HOM05D007641 ORTHO05D007630 5.2e-69 266.9 790 34.1
CANSAT54G2173 Cannabis sativa HOM05D007641 ORTHO05D007630 7.0e-66 256.5 846 33.9
Gorai.002G193100 Gossypium raimondii HOM05D007641 ORTHO05D007630 7.2e-63 246.5 235 58.7
Hma1.2p1_0119F.1_g056956 Hydrangea macrophylla HOM05D007641 ORTHO05D007630 7.2e-63 246.5 502 37.1
Nn2g10289 Nelumbo nucifera HOM05D007641 ORTHO05D007630 3.5e-57 227.6 873 29.1
Phvul.006G079400 Phaseolus vulgaris HOM05D007641 ORTHO05D007630 1.0e-56 226.1 847 30.2
Aqoxy1G01263 Aquilegia oxysepala HOM05D007641 ORTHO05D007630 1.7e-56 225.3 851 29.8
Glyma.18G052000 Glycine max HOM05D007641 ORTHO05D007630 8.6e-56 223.0 847 30.8
Sed0007856 Sechium edule HOM05D007641 ORTHO05D007630 8.6e-56 223.0 878 32.2
Gohir.D01G155850 Gossypium hirsutum HOM05D007641 ORTHO05D007630 4.3e-55 220.7 208 59.1
MBI15_g36478_MAGBIO Magnolia biondii HOM05D007641 ORTHO05D007630 9.5e-55 219.5 722 31.4
arahy.Tifrunner.gnm1.ann1.4PHV2I Arachis hypogaea HOM05D007641 ORTHO05D007630 3.2e-50 204.5 812 28.9
MELO3C019578.2 Cucumis melo HOM05D007641 ORTHO05D007630 7.0e-50 203.4 868 31.1
ClCG02G019020 Citrullus lanatus HOM05D007641 ORTHO05D007630 5.0e-48 197.2 832 28.0
Lj6g0005873 Lotus japonicus HOM05D007641 ORTHO05D007630 4.3e-47 194.1 873 31.4
TAR633G1590 Trochodendron aralioides HOM05D007641 ORTHO05D007630 1.2e-46 192.6 494 34.4
Gorai.002G184200 Gossypium raimondii HOM05D007641 ORTHO05D007630 4.4e-44 184.1 173 55.5
VMungo0540G0343 Vigna mungo HOM05D007641 ORTHO05D007630 1.1e-39 169.5 821 28.0
Lalb_Chr18g0054201 Lupinus albus HOM05D007641 ORTHO05D007630 4.3e-39 167.5 730 29.2
Psat5g147960 Pisum sativum HOM05D007641 ORTHO05D007630 2.1e-38 165.2 857 27.9
Sp4g13010 Schrenkiella parvula HOM05D001940 ORTHO05D007630 6.2e-38 163.7 582 28.4
Ciclev10001550m.g Citrus clementina HOM05D007641 ORTHO05D007630 1.4e-37 162.5 345 35.9
TPR.G13882 Trifolium pratense HOM05D007641 ORTHO05D007630 1.8e-37 162.2 792 27.3
arahy.Tifrunner.gnm1.ann1.F8RHVN Arachis hypogaea HOM05D007641 ORTHO05D007630 5.2e-37 160.6 653 28.6
THA.LOC104815825 Tarenaya hassleriana HOM05D001940 ORTHO05D007630 8.9e-37 159.8 507 34.1
AL4G25360 Arabidopsis lyrata HOM05D001940 ORTHO05D007630 3.4e-36 157.9 559 30.9
Medtr3g467390 Medicago truncatula HOM05D007641 ORTHO05D007630 2.9e-35 154.8 732 28.4
Sopen09g001120 Solanum pennellii HOM05D014625 ORTHO05D007630 6.4e-35 153.7 873 26.1
Solyc09g005140.2 Solanum lycopersicum HOM05D014625 ORTHO05D007630 1.4e-34 152.5 873 26.5
AT2G30480 Arabidopsis thaliana HOM05D001940 ORTHO05D007630 7.1e-34 150.2 609 29.6
Ciclev10004023m.g Citrus clementina HOM05D007641 ORTHO05D007630 1.2e-33 149.4 332 35.8
Gohir.D01G148301 Gossypium hirsutum HOM05D007641 ORTHO05D007630 2.1e-33 148.7 173 48.0
PSO170G4823 Papaver somniferum HOM05D007641 ORTHO05D007630 2.1e-33 148.7 1004 25.6
TAR636G3352 Trochodendron aralioides HOM05D007641 ORTHO05D007630 1.0e-32 146.4 352 32.1
Cpa.g.sc2.293 Carica papaya HOM05D007641 ORTHO05D007630 2.8e-30 138.3 376 33.0
Sc23g0005090 Simmondsia chinensis HOM05D007641 ORTHO05D007630 4.7e-30 137.5 750 29.5
CsaV3_6G013130 Cucumis sativus L. HOM05D007641 ORTHO05D007630 8.1e-30 136.7 853 26.3
HanXRQChr08g0230341 Helianthus annuus HOM05D007641 ORTHO05D007630 1.5e-28 132.5 419 29.8
Migut.D00817 Erythranthe guttata HOM05D007641 ORTHO05D007630 5.8e-28 130.6 491 33.0
GSVIVG01024555001 Vitis vinifera HOM05D007641 ORTHO05D007630 7.6e-28 130.2 216 47.2
Thhalv10017756m.g Eutrema salsugineum HOM05D001940 ORTHO05D007630 1.3e-27 129.4 450 30.0
Lj2A1102G26 Lonicera japonica HOM05D007641 ORTHO05D007630 8.4e-27 126.7 367 32.2
Carub.0004s1164 Capsella rubella HOM05D001940 ORTHO05D007630 2.1e-25 122.1 635 25.7
BcaC02g11137 Brassica carinata HOM05D001940 ORTHO05D007630 1.5e-23 115.9 507 27.2
MD11G1053300 Malus domestica HOM05D007641 ORTHO05D007630 3.6e-22 111.3 341 33.4
Lsat_1_v5_gn_9_13760 Lactuca sativa HOM05D007641 ORTHO05D007630 8.1e-22 110.2 310 37.1
BcaB02g10326 Brassica carinata HOM05D001940 ORTHO05D007630 1.4e-21 109.4 498 27.9
PSO017G1347 Papaver somniferum HOM05D007641 ORTHO05D007630 9.0e-21 106.7 395 31.4
Hund18459 Selenicereus undatus HOM05D029401 ORTHO05D007630 1.5e-20 105.9 852 26.6
Peaxi162Scf00605g00515 Petunia axillaris HOM05D014625 ORTHO05D007630 3.4e-20 104.8 830 23.0
Oeu064683.1 Olea europaea HOM05D007641 ORTHO05D007630 1.3e-19 102.8 680 25.4
Ca_15060_v3 Cicer arietinum L. HOM05D007641 ORTHO05D007630 1.1e-18 99.8 554 27.4
A05p14980 Brassica napus HOM05D001940 ORTHO05D007630 3.2e-18 98.2 511 27.0
ECA247G3209 Erigeron canadensis HOM05D007641 ORTHO05D007630 1.2e-17 96.3 735 23.0
C04p20070 Brassica napus HOM05D001940 ORTHO05D007630 2.1e-17 95.5 463 26.1
BolC4t23545H Brassica oleracea HOM05D001940 ORTHO05D007630 2.7e-17 95.1 379 30.9
Os01g0167700 Oryza sativa ssp. japonica HOM05D052079 ORTHO05D007630 7.8e-17 93.6 490 23.7
BraA05t20424Z Brassica rapa HOM05D001940 ORTHO05D007630 1.1e-15 89.7 382 33.8
PGR102G3245 Punica granatum HOM05D007641 ORTHO05D007630 1.1e-15 89.7 732 23.5
Cpa.g.sc2.294 Carica papaya HOM05D007641 ORTHO05D007630 7.3e-15 87.0 124 40.3
SGA_v2.0_scaffold20G09288 Striga asiatica HOM05D007641 ORTHO05D007630 1.3e-14 86.3 344 27.6
FAN21G1070 Fragaria x ananassa HOM05D007641 ORTHO05D007630 2.1e-14 85.5 333 30.6
DCAR_018642 Daucus carota HOM05D007641 ORTHO05D007630 2.8e-14 85.1 729 23.7
CARHR123930 Cardamine hirsuta HOM05D001940 ORTHO05D007630 1.8e-13 82.4 222 31.5
TAR636G0755 Trochodendron aralioides HOM05D007641 ORTHO05D007630 3.1e-13 81.6 194 40.2
AUR62001158 Chenopodium quinoa HOM05D029401 ORTHO05D007630 6.9e-13 80.5 429 26.8
Ah.08g218910 Amaranthus hybridus HOM05D000020 ORTHO05D002192 3.4e-12 78.2 258 29.5
AUR62016518 Chenopodium quinoa HOM05D029401 ORTHO05D007630 6.4e-11 73.9 315 27.6
Nitab4.5_0001868g0030 Nicotiana tabacum HOM05D014625 ORTHO05D007630 6.4e-11 73.9 301 27.9
Zm00001eb336420 Zea mays HOM05D052079 ORTHO05D007630 6.4e-11 73.9 482 27.0
Ca_15061_v3 Cicer arietinum L. HOM05D007641 ORTHO05D007630 7.1e-10 70.5 291 26.8
Glyma.11G198150 Glycine max HOM05D007641 ORTHO05D007630 2.1e-09 68.9 173 31.8
ATR1127G234 Amborella trichopoda HOM05D007641 ORTHO05D007630 1.0e-08 66.6 210 27.6
MD11G1053200 Malus domestica HOM05D007641 ORTHO05D007630 1.0e-08 66.6 121 38.8
PSO384G0550 Papaver somniferum HOM05D007641 ORTHO05D007630 1.3e-08 66.2 87 43.7
Gohir.A05G417101 Gossypium hirsutum HOM05D007641 ORTHO05D007630 2.1e-06 58.9 70 54.3


User provided reference genes

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