Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G362300 Theobroma cacao HOM05D005957 ORTHO05D007318 8.6e-60 233.4 114 100.0
Duzib168G0649 Durio zibethinus HOM05D005957 ORTHO05D007318 2.3e-52 208.8 116 87.9
COL.COLO4_11196 Corchorus olitorius HOM05D005957 ORTHO05D007318 1.5e-51 206.1 113 88.5
Gohir.D05G134050 Gossypium hirsutum HOM05D005957 ORTHO05D007318 8.1e-42 173.7 123 75.6
Gorai.009G137600 Gossypium raimondii HOM05D005957 ORTHO05D007318 8.1e-42 173.7 123 75.6
Potri.019G128400 Populus trichocarpa HOM05D005957 ORTHO05D007318 1.4e-41 172.9 111 73.0
Potri.013G155300 Populus trichocarpa HOM05D005957 ORTHO05D007318 2.3e-41 172.2 115 73.0
GSVIVG01024580001 Vitis vinifera HOM05D005957 ORTHO05D007318 5.2e-41 171.0 113 72.6
QL01p025125 Quercus lobata HOM05D005957 ORTHO05D007318 6.8e-41 170.6 114 72.8
Gohir.A05G129400 Gossypium hirsutum HOM05D005957 ORTHO05D007318 1.5e-40 169.5 124 75.8
Sabra19G0126000 Salix brachista HOM05D005957 ORTHO05D007318 2.0e-40 169.1 111 70.3
TAR623G0423 Trochodendron aralioides HOM05D005957 ORTHO05D007318 7.5e-40 167.2 108 71.3
TWI79G1455 Tripterygium wilfordii HOM05D005957 ORTHO05D007318 3.7e-39 164.9 114 69.3
Haze_24453 Corylus avellana HOM05D005957 ORTHO05D007318 6.4e-39 164.1 115 70.4
Sabra13G0125100 Salix brachista HOM05D005957 ORTHO05D007318 8.3e-39 163.7 111 69.4
Hma1.2p1_0119F.1_g056870 Hydrangea macrophylla HOM05D005957 ORTHO05D007318 3.2e-38 161.8 114 68.4
Cfa011817 Carpinus fangiana HOM05D005957 ORTHO05D007318 5.4e-38 161.0 115 68.7
CSS0038993 Camellia sinensis var. sinensis HOM05D005957 ORTHO05D007318 3.5e-37 158.3 115 67.8
Cpa.g.sc2.317 Carica papaya HOM05D005957 ORTHO05D007318 3.5e-37 158.3 109 68.8
Peaxi162Scf01692g00003 Petunia axillaris HOM05D005957 ORTHO05D007318 6.0e-37 157.5 113 68.1
Atru.chr1.2524 Acer truncatum HOM05D005957 ORTHO05D007318 7.8e-37 157.1 117 67.5
Oeu064677.1 Olea europaea HOM05D005957 ORTHO05D007318 7.8e-37 157.1 113 67.3
MD11G1055300 Malus domestica HOM05D005957 ORTHO05D007318 1.7e-36 156.0 111 67.6
FvH4_3g40300 Fragaria vesca HOM05D005957 ORTHO05D007318 3.0e-36 155.2 107 70.1
FAN11G2330 Fragaria x ananassa HOM05D005957 ORTHO05D007318 3.0e-36 155.2 107 70.1
FAN16G3236 Fragaria x ananassa HOM05D005957 ORTHO05D007318 3.0e-36 155.2 107 70.1
FAN21G1009 Fragaria x ananassa HOM05D005957 ORTHO05D007318 3.0e-36 155.2 107 70.1
RcHm_v2.0_Chr5g0072641 Rosa chinensis HOM05D005957 ORTHO05D007318 3.0e-36 155.2 112 69.6
Nitab4.5_0007927g0010 Nicotiana tabacum HOM05D005957 ORTHO05D007318 3.9e-36 154.8 112 68.8
CANSAT54G0691 Cannabis sativa HOM05D005957 ORTHO05D007318 1.5e-35 152.9 113 68.1
FAN25G1085 Fragaria x ananassa HOM05D005957 ORTHO05D007318 1.5e-35 152.9 106 69.8
Manes.18G139500 Manihot esculenta HOM05D005957 ORTHO05D007318 1.5e-35 152.9 115 66.1
Dinv04837 Davidia involucrata HOM05D005957 ORTHO05D007318 5.6e-35 151.0 109 68.8
Nitab4.5_0000002g0080 Nicotiana tabacum HOM05D005957 ORTHO05D007318 9.5e-35 150.2 112 67.9
PGSC0003DMG400046061 Solanum tuberosum HOM05D005957 ORTHO05D007318 1.6e-34 149.4 114 65.8
CiPaw.13G065100 Carya illinoinensis HOM05D005957 ORTHO05D007318 3.6e-34 148.3 114 63.2
CiPaw.14G051700 Carya illinoinensis HOM05D005957 ORTHO05D007318 3.6e-34 148.3 108 68.5
Prupe.6G042800 Prunus persica HOM05D005957 ORTHO05D007318 4.7e-34 147.9 108 65.7
Solyc01g090870.1 Solanum lycopersicum HOM05D005957 ORTHO05D007318 6.2e-34 147.5 114 64.0
Sopen01g036610 Solanum pennellii HOM05D005957 ORTHO05D007318 6.2e-34 147.5 114 64.0
Glyma.02G235500 Glycine max HOM05D005957 ORTHO05D007318 1.1e-33 146.7 111 69.4
Cc01_g15210 Coffea canephora HOM05D005957 ORTHO05D007318 1.4e-33 146.4 104 66.3
Eucgr.J01842 Eucalyptus grandis HOM05D005957 ORTHO05D007318 1.4e-33 146.4 110 67.3
LjContig00141g0008224 Lotus japonicus HOM05D005957 ORTHO05D007318 2.3e-33 145.6 90 74.4
Glyma.14G203500 Glycine max HOM05D005957 ORTHO05D007318 4.0e-33 144.8 111 67.6
Aqoxy2G00718 Aquilegia oxysepala HOM05D005957 ORTHO05D007318 5.2e-33 144.4 108 64.8
vmacro02888 Vaccinium macrocarpon HOM05D005957 ORTHO05D007318 6.8e-33 144.1 114 61.4
MBI03_g02190_MAGBIO Magnolia biondii HOM05D005957 ORTHO05D007318 2.0e-32 142.5 116 62.9
Nitab4.5_0002091g0020 Nicotiana tabacum HOM05D005957 ORTHO05D007318 2.0e-32 142.5 115 60.9
MD03G1053700 Malus domestica HOM05D005957 ORTHO05D007318 2.6e-32 142.1 111 64.9
Rhsim13G0060900 Rhododendron simsii HOM05D005957 ORTHO05D007318 2.6e-32 142.1 104 68.3
Peaxi162Scf00390g00049 Petunia axillaris HOM05D005957 ORTHO05D007318 5.8e-32 141.0 114 61.4
Psat2g052120 Pisum sativum HOM05D005957 ORTHO05D007318 7.6e-32 140.6 110 66.4
Medtr5g075190 Medicago truncatula HOM05D005957 ORTHO05D007318 9.9e-32 140.2 110 65.5
Nn5g26879 Nelumbo nucifera HOM05D005957 ORTHO05D007318 2.2e-31 139.0 113 62.8
Phvul.008G248400 Phaseolus vulgaris HOM05D005957 ORTHO05D007318 2.2e-31 139.0 112 63.4
Solyc06g082450.1 Solanum lycopersicum HOM05D005957 ORTHO05D007318 2.2e-31 139.0 114 63.2
VMungo0647G0754 Vigna mungo HOM05D005957 ORTHO05D007318 2.2e-31 139.0 86 77.9
Ca_05700_v3 Cicer arietinum L. HOM05D005957 ORTHO05D007318 3.8e-31 138.3 107 66.4
Ca_30026_v3 Cicer arietinum L. HOM05D005957 ORTHO05D007318 3.8e-31 138.3 107 66.4
MSTRG.17909 Avicennia marina HOM05D005957 ORTHO05D007318 4.9e-31 137.9 110 59.1
Ah.08g217120 Amaranthus hybridus HOM05D005957 ORTHO05D007318 6.4e-31 137.5 100 65.0
PSO170G5428 Papaver somniferum HOM05D005957 ORTHO05D007318 6.4e-31 137.5 112 65.2
Dinv28722 Davidia involucrata HOM05D005957 ORTHO05D007318 8.4e-31 137.1 90 71.1
TPR.G25771 Trifolium pratense HOM05D005957 ORTHO05D007318 8.4e-31 137.1 94 69.1
Ciclev10003853m.g Citrus clementina HOM05D005957 ORTHO05D007318 1.1e-30 136.7 119 64.7
PSO017G7297 Papaver somniferum HOM05D005957 ORTHO05D007318 1.1e-30 136.7 112 65.2
Sopen06g033830 Solanum pennellii HOM05D005957 ORTHO05D007318 1.1e-30 136.7 95 70.5
CsaV3_6G019090 Cucumis sativus L. HOM05D005957 ORTHO05D007318 2.4e-30 135.6 110 61.8
ECA236G1285 Erigeron canadensis HOM05D005957 ORTHO05D007318 5.4e-30 134.4 116 60.3
CAN.G1872.4 Capsicum annuum HOM05D005957 ORTHO05D007318 7.1e-30 134.0 115 60.0
Lsat_1_v5_gn_0_40840 Lactuca sativa HOM05D005957 ORTHO05D007318 7.1e-30 134.0 113 60.2
ATR0681G143 Amborella trichopoda HOM05D005957 ORTHO05D007318 1.6e-29 132.9 106 62.3
SGA_v2.0_scaffold77G25368 Striga asiatica HOM05D005957 ORTHO05D007318 1.6e-29 132.9 111 57.7
ClCG02G019100 Citrullus lanatus HOM05D005957 ORTHO05D007318 2.1e-29 132.5 92 70.7
MELO3C026874.2 Cucumis melo HOM05D005957 ORTHO05D007318 3.5e-29 131.7 91 68.1
Oeu011373.1 Olea europaea HOM05D005957 ORTHO05D007318 3.5e-29 131.7 104 61.5
Sed0019639 Sechium edule HOM05D005957 ORTHO05D007318 3.5e-29 131.7 110 60.9
HanXRQChr17g0565391 Helianthus annuus HOM05D005957 ORTHO05D007318 4.6e-29 131.3 110 58.2
SalBow6G3501 Salvia bowleyana HOM05D005957 ORTHO05D007318 4.6e-29 131.3 106 64.2
Lalb_Chr17g0345591 Lupinus albus HOM05D005957 ORTHO05D007318 7.8e-29 130.6 108 62.0
THA.LOC104800785 Tarenaya hassleriana HOM05D005957 ORTHO05D007318 7.8e-29 130.6 90 66.7
HanXRQChr01g0028631 Helianthus annuus HOM05D005957 ORTHO05D007318 1.0e-28 130.2 112 58.0
Migut.N00743 Erythranthe guttata HOM05D005957 ORTHO05D007318 1.3e-28 129.8 117 56.4
EL10Ac7g16454 Beta vulgaris HOM05D005957 ORTHO05D007318 3.0e-28 128.6 91 64.8
PGR119G2032 Punica granatum HOM05D005957 ORTHO05D007318 3.9e-28 128.3 103 64.1
Nitab4.5_0002759g0020 Nicotiana tabacum HOM05D005957 ORTHO05D007318 1.1e-27 126.7 115 58.3
Carub.0004s1155 Capsella rubella HOM05D005957 ORTHO05D007318 5.6e-27 124.4 103 62.1
CARHR123750 Cardamine hirsuta HOM05D005957 ORTHO05D007318 9.6e-27 123.6 103 61.2
Aa31LG5G6330 Aethionema arabicum HOM05D005957 ORTHO05D007318 1.6e-26 122.9 103 60.2
AT2G30395 Arabidopsis thaliana HOM05D005957 ORTHO05D007318 1.6e-26 122.9 102 59.8
BcaC02g11133 Brassica carinata HOM05D005957 ORTHO05D007318 2.8e-26 122.1 108 59.3
AL4G25260 Arabidopsis lyrata HOM05D005957 ORTHO05D007318 4.7e-26 121.3 95 62.1
BolC4t23551H Brassica oleracea HOM05D005957 ORTHO05D007318 6.2e-26 120.9 108 58.3
A05p15090 Brassica napus HOM05D005957 ORTHO05D007318 8.1e-26 120.6 108 58.3
C04p20120 Brassica napus HOM05D005957 ORTHO05D007318 8.1e-26 120.6 108 58.3
Migut.D00827 Erythranthe guttata HOM05D005957 ORTHO05D007318 1.1e-25 120.2 88 65.9
Sp4g12950 Schrenkiella parvula HOM05D005957 ORTHO05D007318 1.4e-25 119.8 108 56.5
DCAR_023195 Daucus carota HOM05D005957 ORTHO05D007318 1.8e-25 119.4 126 50.0
Dinv12270 Davidia involucrata HOM05D005957 ORTHO05D007318 2.4e-25 119.0 86 67.4
Thhalv10017867m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 4.0e-25 118.2 96 61.5
Phvul.006G076900 Phaseolus vulgaris HOM05D005957 ORTHO05D007318 2.0e-24 115.9 96 60.4
BcaB02g10322 Brassica carinata HOM05D005957 ORTHO05D007318 4.4e-24 114.8 106 57.5
BraA05t20430Z Brassica rapa HOM05D005957 ORTHO05D007318 4.4e-24 114.8 108 57.4
Carub.0001s0622 Capsella rubella HOM05D005957 ORTHO05D007318 1.3e-23 113.2 93 58.1
Thhalv10017852m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 3.8e-23 111.7 96 60.4
Ah.15g095100 Amaranthus hybridus HOM05D005957 ORTHO05D007318 1.1e-22 110.2 83 62.7
BcaB06g28364 Brassica carinata HOM05D005957 ORTHO05D007318 1.1e-22 110.2 96 57.3
AT1G06923 Arabidopsis thaliana HOM05D005957 ORTHO05D007318 2.4e-22 109.0 99 52.5
Sc21g0004870 Simmondsia chinensis HOM05D005957 ORTHO05D007318 2.4e-22 109.0 100 55.0
A04p23170 Brassica napus HOM05D005957 ORTHO05D007318 4.2e-22 108.2 96 59.4
Os07g0679100 Oryza sativa ssp. japonica HOM05D005957 ORTHO05D007318 4.2e-22 108.2 79 65.8
AL1G16950 Arabidopsis lyrata HOM05D005957 ORTHO05D007318 5.4e-22 107.8 98 53.1
Sp1g05630 Schrenkiella parvula HOM05D005957 ORTHO05D007318 7.1e-22 107.5 94 54.3
CARHR006600 Cardamine hirsuta HOM05D005957 ORTHO05D007318 9.3e-22 107.1 94 53.2
BraA04t17844Z Brassica rapa HOM05D005957 ORTHO05D007318 1.6e-21 106.3 96 58.3
BcaC02g08022 Brassica carinata HOM05D005957 ORTHO05D007318 3.5e-21 105.1 96 58.3
C04p59320 Brassica napus HOM05D005957 ORTHO05D007318 3.5e-21 105.1 96 58.3
BolC4t27440H Brassica oleracea HOM05D005957 ORTHO05D007318 3.5e-21 105.1 96 58.3
Thhalv10009633m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 3.5e-21 105.1 75 62.7
AUR62007156 Chenopodium quinoa HOM05D003140 ORTHO05D003851 1.3e-20 103.2 83 61.4
BcaC07g42550 Brassica carinata HOM05D005957 ORTHO05D007318 3.3e-19 98.6 66 62.1
Zm00001eb350230 Zea mays HOM05D005957 ORTHO05D007318 1.3e-18 96.7 93 53.8
Zm00001eb330630 Zea mays HOM05D005957 ORTHO05D007318 4.8e-18 94.7 68 64.7
A09p66670 Brassica napus HOM05D005957 ORTHO05D007318 8.1e-18 94.0 64 62.5
BraA09t42007Z Brassica rapa HOM05D005957 ORTHO05D007318 8.1e-18 94.0 64 62.5
BcaC07g42036 Brassica carinata HOM05D005957 ORTHO05D007318 1.4e-17 93.2 66 60.6
BcaC07g42037 Brassica carinata HOM05D005957 ORTHO05D007318 1.4e-17 93.2 66 60.6
C08p50900 Brassica napus HOM05D005957 ORTHO05D007318 1.4e-17 93.2 66 60.6
BolC8t52618H Brassica oleracea HOM05D005957 ORTHO05D007318 1.4e-17 93.2 66 60.6
Os05g0328300 Oryza sativa ssp. japonica HOM05D005957 ORTHO05D007318 1.2e-16 90.1 67 59.7
SEGI_34718 Sequoiadendron giganteum HOM05D005957 ORTHO05D007318 5.8e-08 61.2 60 41.7
SEGI_23498 Sequoiadendron giganteum HOM05D002997 ORTHO05D003021 7.1e-06 54.3 56 39.3


User provided reference genes

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