Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G359400 Theobroma cacao HOM05D005258 ORTHO05D006525 2.7e-203 711.8 370 100.0
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 1.9e-153 546.2 339 85.5
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 2.0e-150 536.2 339 80.5
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 6.5e-149 531.2 339 83.8
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 5.1e-146 521.5 350 81.1
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 1.0e-125 454.1 306 72.5
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 5.0e-125 451.8 329 67.8
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 1.6e-123 446.8 308 75.0
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 1.0e-122 444.1 310 73.5
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 6.3e-120 434.9 342 68.7
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 6.3e-120 434.9 305 70.8
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 7.0e-119 431.4 341 68.9
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 1.2e-118 430.6 353 66.0
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 5.9e-118 428.3 276 75.4
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 7.7e-118 427.9 318 68.2
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 1.0e-117 427.6 346 70.2
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 2.2e-117 426.4 276 75.0
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 5.0e-117 425.2 339 66.1
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 6.5e-117 424.9 339 65.2
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 8.5e-117 424.5 276 75.0
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 1.2e-115 420.6 339 64.6
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 2.7e-115 419.5 344 65.1
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 6.1e-115 418.3 339 64.3
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 1.0e-114 417.5 344 66.3
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 1.0e-114 417.5 328 64.3
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 1.4e-114 417.2 341 65.4
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 1.8e-114 416.8 342 62.9
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 2.3e-114 416.4 349 69.1
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 6.7e-114 414.8 300 68.3
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 8.8e-114 414.5 322 65.2
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 1.1e-113 414.1 269 75.5
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 7.4e-113 411.4 324 70.7
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 1.3e-112 410.6 306 67.6
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 2.2e-112 409.8 262 74.0
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 4.8e-112 408.7 268 73.1
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 4.8e-112 408.7 268 73.9
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 1.1e-111 407.5 258 75.2
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 1.4e-111 407.1 312 65.4
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 3.1e-111 406.0 314 66.9
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 4.1e-111 405.6 344 63.7
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 4.1e-111 405.6 259 72.6
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 5.3e-111 405.2 259 74.1
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 1.6e-110 403.7 268 73.1
TAR633G1809 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.6e-110 403.7 276 72.1
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 2.0e-110 403.3 277 70.8
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 2.0e-110 403.3 313 68.1
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 2.0e-110 403.3 311 67.2
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 3.5e-110 402.5 313 67.1
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 5.9e-110 401.7 339 63.1
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 7.7e-110 401.4 256 75.4
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 7.7e-110 401.4 342 63.2
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 1.0e-109 401.0 353 61.8
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 1.7e-109 400.2 256 75.0
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 6.5e-109 398.3 321 65.1
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 1.1e-108 397.5 312 66.0
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 2.5e-108 396.4 344 62.2
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 7.2e-108 394.8 314 65.3
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 7.2e-108 394.8 268 72.4
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 2.7e-107 392.9 309 69.6
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 6.1e-107 391.7 306 67.6
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 6.1e-107 391.7 348 59.2
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 1.0e-106 391.0 365 59.5
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 1.4e-106 390.6 343 61.8
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 6.8e-106 388.3 306 67.0
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 3.4e-105 386.0 320 66.2
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 1.7e-104 383.6 275 70.5
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 2.2e-104 383.3 259 71.8
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 2.8e-104 382.9 346 57.2
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 4.8e-104 382.1 323 61.9
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 1.1e-103 380.9 332 64.2
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 1.4e-103 380.6 321 65.7
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 1.2e-102 377.5 259 69.9
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 2.7e-102 376.3 340 60.0
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 2.7e-102 376.3 340 57.6
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 4.5e-102 375.6 248 73.0
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.3e-101 374.0 314 65.3
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 3.8e-101 372.5 256 71.9
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 2.5e-100 369.8 252 72.2
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 1.2e-99 367.5 257 69.6
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 3.0e-98 362.8 260 69.2
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 2.0e-97 360.1 231 74.9
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 5.7e-97 358.6 305 60.7
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 5.7e-97 358.6 256 68.4
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 1.7e-96 357.1 208 79.3
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 3.7e-96 355.9 256 69.9
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 3.7e-96 355.9 246 70.3
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 7.0e-95 351.7 340 58.2
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 8.6e-93 344.7 208 78.4
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 1.4e-90 337.4 267 64.4
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 2.3e-90 336.7 246 65.0
FAN25G3091 Fragaria x ananassa HOM05D005258 ORTHO05D006525 4.0e-90 335.9 303 59.7
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 2.6e-89 333.2 326 54.0
QL01p025810 Quercus lobata HOM05D005258 ORTHO05D006525 1.3e-88 330.9 310 59.4
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 3.7e-88 329.3 308 57.8
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 3.7e-88 329.3 379 50.7
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 4.6e-86 322.4 276 59.4
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 1.1e-84 317.8 309 57.0
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 3.6e-83 312.8 306 61.4
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 3.4e-81 306.2 309 55.0
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 9.8e-81 304.7 337 55.2
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 1.3e-80 304.3 196 74.0
RcHm_v2.0_Chr5g0071911 Rosa chinensis HOM05D005258 ORTHO05D006525 7.8e-78 295.0 257 59.5
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 2.3e-77 293.5 256 60.5
FAN16G1300 Fragaria x ananassa HOM05D005258 ORTHO05D006525 2.5e-76 290.0 253 60.1
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 4.7e-75 285.8 236 59.7
FAN21G1740 Fragaria x ananassa HOM05D005258 ORTHO05D006525 2.6e-73 280.0 253 59.3
VMungo0540G2447 Vigna mungo HOM05D005258 ORTHO05D006525 7.5e-73 278.5 174 74.7
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 1.1e-71 274.6 256 57.0
CAN.G1095.26 Capsicum annuum HOM05D005258 ORTHO05D000750 1.7e-69 267.3 171 74.3
BolC5t30224H Brassica oleracea HOM05D005258 ORTHO05D006525 1.4e-66 257.7 236 62.3
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 1.8e-66 257.3 160 75.0
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 5.2e-66 255.8 208 63.0
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 1.5e-65 254.2 309 49.2
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 2.8e-59 233.4 309 49.5
Pp3c11_22290 Physcomitrium patens HOM05D005258 ORTHO05D006525 4.7e-59 232.6 237 50.2
TAR628G0009 Trochodendron aralioides HOM05D005258 ORTHO05D006525 3.8e-56 223.0 203 66.5
Mapoly0019s0020 Marchantia polymorpha HOM05D005258 ORTHO05D006525 1.9e-55 220.7 286 41.6
AagrBONN_evm.TU.Sc2ySwM_117.1403 Anthoceros agrestis HOM05D005258 ORTHO05D006525 2.1e-51 207.2 244 45.1
SMO353G0383 Selaginella moellendorffii HOM05D005258 ORTHO05D006525 7.4e-44 182.2 154 52.6
MBI11_g20619_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001431 6.9e-34 149.1 140 59.3
CBR_g40648 Chara braunii HOM05D005258 ORTHO05D006525 1.9e-31 141.0 170 45.3
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 2.3e-29 134.0 85 74.1
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 4.3e-28 129.8 89 65.2
CAN.G403.12 Capsicum annuum HOM05D005258 ORTHO05D006525 6.3e-27 125.9 97 62.9
Lsat_1_v5_gn_3_46641 Lactuca sativa HOM05D005258 ORTHO05D006525 2.3e-21 107.5 129 46.5
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 2.2e-16 90.9 52 84.6
PRCOL_00003540 Prasinoderma coloniale HOM05D005258 ORTHO05D006525 6.5e-16 89.4 254 31.5
Lsat_1_v5_gn_3_46621 Lactuca sativa HOM05D005258 ORTHO05D006525 5.5e-15 86.3 63 68.3
CAN.G1538.6 Capsicum annuum HOM05D005258 ORTHO05D006525 2.1e-14 84.3 66 63.6
TAR628G1613 Trochodendron aralioides HOM05D005258 ORTHO05D006525 4.6e-14 83.2 196 33.2
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 8.8e-13 79.0 48 85.4
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 4.8e-11 73.2 129 35.7
Cre03.g176700 Chlamydomonas reinhardtii HOM05D005258 ORTHO05D006525 1.4e-10 71.6 81 40.7
MCO01G624 Micromonas commoda HOM05D005258 ORTHO05D006525 2.4e-10 70.9 135 31.1


User provided reference genes

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