Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G357000 Theobroma cacao HOM05D006986 ORTHO05D008714 1.4e-85 319.7 173 100.0
Duzib168G0630 Durio zibethinus HOM05D006986 ORTHO05D008714 1.9e-63 246.1 171 79.5
Gohir.D03G142700 Gossypium hirsutum HOM05D006986 ORTHO05D008714 1.6e-54 216.5 174 71.8
Gorai.003G149800 Gossypium raimondii HOM05D006986 ORTHO05D008714 7.9e-49 197.6 176 68.2
Gohir.A03G025800 Gossypium hirsutum HOM05D006986 ORTHO05D008714 5.1e-48 194.9 176 68.2
GSVIVG01024640001 Vitis vinifera HOM05D006986 ORTHO05D008714 1.1e-45 187.2 174 62.1
Nn2g10992 Nelumbo nucifera HOM05D006986 ORTHO05D008714 1.0e-40 170.6 171 61.4
Cc01_g14800 Coffea canephora HOM05D006986 ORTHO05D008714 5.7e-39 164.9 182 56.0
Dinv28693 Davidia involucrata HOM05D006986 ORTHO05D008714 7.4e-39 164.5 177 56.5
TAR633G1018 Trochodendron aralioides HOM05D006986 ORTHO05D008714 6.3e-38 161.4 164 57.9
CiPaw.13G069900 Carya illinoinensis HOM05D006986 ORTHO05D008714 1.1e-37 160.6 189 56.6
Sopen03g028830 Solanum pennellii HOM05D006986 ORTHO05D008714 1.4e-37 160.2 180 53.3
Solyc03g098130.3 Solanum lycopersicum HOM05D006986 ORTHO05D008714 1.8e-37 159.8 180 53.3
Manes.18G142700 Manihot esculenta HOM05D006986 ORTHO05D008714 1.2e-36 157.1 182 54.9
TWI79G1150 Tripterygium wilfordii HOM05D006986 ORTHO05D008714 1.7e-35 153.3 188 54.3
Haze_24406 Corylus avellana HOM05D006986 ORTHO05D008714 8.5e-35 151.0 163 55.2
QL01p026443 Quercus lobata HOM05D006986 ORTHO05D008714 1.4e-34 150.2 181 55.2
Atru.chr3.4128 Acer truncatum HOM05D006986 ORTHO05D008714 2.5e-34 149.4 162 54.9
Actinidia23203 Actinidia chinensis HOM05D006986 ORTHO05D008714 2.5e-34 149.4 169 54.4
PGSC0003DMG401031052 Solanum tuberosum HOM05D006986 ORTHO05D008714 3.2e-34 149.1 180 51.7
Nitab4.5_0000758g0110 Nicotiana tabacum HOM05D006986 ORTHO05D008714 5.5e-34 148.3 181 51.4
Cpa.g.sc2.365 Carica papaya HOM05D006986 ORTHO05D008714 9.4e-34 147.5 174 54.0
FvH4_3g39700 Fragaria vesca HOM05D006986 ORTHO05D008714 3.6e-33 145.6 173 53.2
FAN16G0899 Fragaria x ananassa HOM05D006986 ORTHO05D008714 3.6e-33 145.6 173 53.2
Nitab4.5_0000003g0230 Nicotiana tabacum HOM05D006986 ORTHO05D008714 7.9e-33 144.4 164 53.7
Sabra09G0059300 Salix brachista HOM05D006986 ORTHO05D008714 1.4e-32 143.7 182 52.7
TAR636G2132 Trochodendron aralioides HOM05D006986 ORTHO05D008714 1.8e-32 143.3 174 51.1
CAN.G637.24 Capsicum annuum HOM05D006986 ORTHO05D008714 5.1e-32 141.7 172 52.9
FAN11G3553 Fragaria x ananassa HOM05D006986 ORTHO05D008714 1.1e-31 140.6 181 50.8
Potri.009G077700 Populus trichocarpa HOM05D006986 ORTHO05D008714 1.5e-31 140.2 178 51.1
Rhsim01G0240600 Rhododendron simsii HOM05D006986 ORTHO05D008714 3.3e-31 139.0 148 54.7
Cfa011771 Carpinus fangiana HOM05D006986 ORTHO05D008714 4.4e-31 138.7 160 53.1
PGR102G2392 Punica granatum HOM05D006986 ORTHO05D008714 5.7e-31 138.3 182 52.7
COL.COLO4_11142 Corchorus olitorius HOM05D006986 ORTHO05D008714 7.4e-31 137.9 90 81.1
Lsat_1_v5_gn_8_111400 Lactuca sativa HOM05D006986 ORTHO05D008714 9.7e-31 137.5 171 53.8
Eucgr.B03999 Eucalyptus grandis HOM05D006986 ORTHO05D008714 2.2e-30 136.3 187 50.3
Lalb_Chr15g0083221 Lupinus albus HOM05D006986 ORTHO05D008714 2.2e-30 136.3 156 57.1
FAN25G2061 Fragaria x ananassa HOM05D006986 ORTHO05D008714 2.8e-30 136.0 154 55.8
ClCG03G000370 Citrullus lanatus HOM05D006986 ORTHO05D008714 4.8e-30 135.2 157 52.2
THA.LOC104800770 Tarenaya hassleriana HOM05D006986 ORTHO05D008714 6.3e-30 134.8 177 50.3
MELO3C020513.2 Cucumis melo HOM05D006986 ORTHO05D008714 1.4e-29 133.7 157 50.3
VMungo0540G2396 Vigna mungo HOM05D006986 ORTHO05D008714 1.4e-29 133.7 162 54.3
Glyma.11G164400 Glycine max HOM05D006986 ORTHO05D008714 2.4e-29 132.9 165 54.5
Medtr3g031370 Medicago truncatula HOM05D006986 ORTHO05D008714 3.1e-29 132.5 161 55.3
DCAR_007347 Daucus carota HOM05D006986 ORTHO05D008714 4.1e-29 132.1 143 53.8
MD03G1055700 Malus domestica HOM05D006986 ORTHO05D008714 7.0e-29 131.3 180 50.0
Psat5g153400 Pisum sativum HOM05D006986 ORTHO05D008714 7.0e-29 131.3 166 52.4
vmacro14620 Vaccinium macrocarpon HOM05D006986 ORTHO05D008714 7.0e-29 131.3 165 50.9
Peaxi162Scf00060g00081 Petunia axillaris HOM05D006986 ORTHO05D008714 1.5e-28 130.2 176 48.9
Peaxi162Scf00108g00061 Petunia axillaris HOM05D006986 ORTHO05D008714 1.5e-28 130.2 172 50.6
Peaxi162Scf01176g00011 Petunia axillaris HOM05D006986 ORTHO05D008714 2.6e-28 129.4 176 50.0
Ca_15003_v3 Cicer arietinum L. HOM05D006986 ORTHO05D008714 4.5e-28 128.6 167 52.7
Sc21g0005260 Simmondsia chinensis HOM05D006986 ORTHO05D008714 4.5e-28 128.6 158 53.2
MSTRG.12687 Avicennia marina HOM05D006986 ORTHO05D008714 5.9e-28 128.3 151 54.3
CsaV3_1G036550 Cucumis sativus L. HOM05D006986 ORTHO05D008714 5.9e-28 128.3 157 49.7
Glyma.18G057600 Glycine max HOM05D006986 ORTHO05D008714 5.9e-28 128.3 167 52.1
Peaxi162Scf00154g00045 Petunia axillaris HOM05D006986 ORTHO05D008714 5.9e-28 128.3 176 50.0
CANSAT54G0324 Cannabis sativa HOM05D006986 ORTHO05D008714 1.3e-27 127.1 177 48.6
AUR62009676 Chenopodium quinoa HOM05D006986 ORTHO05D008714 1.3e-27 127.1 181 47.5
Lj6g0005028 Lotus japonicus HOM05D006986 ORTHO05D008714 1.3e-27 127.1 168 48.8
arahy.Tifrunner.gnm1.ann1.58BUY7 Arachis hypogaea HOM05D006986 ORTHO05D008714 2.9e-27 125.9 147 59.9
Sed0010409 Sechium edule HOM05D006986 ORTHO05D008714 2.9e-27 125.9 145 53.1
Phvul.006G073400 Phaseolus vulgaris HOM05D006986 ORTHO05D008714 8.5e-27 124.4 162 52.5
Prupe.6G049000 Prunus persica HOM05D006986 ORTHO05D008714 8.5e-27 124.4 179 46.9
SGA_v2.0_scaffold120G32953 Striga asiatica HOM05D006986 ORTHO05D008714 2.5e-26 122.9 150 51.3
Ah.08g215140 Amaranthus hybridus HOM05D006986 ORTHO05D008714 1.2e-25 120.6 177 44.6
Ciclev10029398m.g Citrus clementina HOM05D006986 ORTHO05D008714 1.6e-25 120.2 181 51.4
arahy.Tifrunner.gnm1.ann1.RI1AQ0 Arachis hypogaea HOM05D006986 ORTHO05D008714 2.1e-25 119.8 147 57.1
CDE06G1764 Ceratophyllum demersum HOM05D006986 ORTHO05D008714 3.6e-25 119.0 148 48.0
Migut.N00765 Erythranthe guttata HOM05D006986 ORTHO05D008714 3.6e-25 119.0 177 48.0
Peaxi162Scf00055g00052 Petunia axillaris HOM05D006986 ORTHO05D008714 1.0e-24 117.5 161 49.1
Oeu029417.1 Olea europaea HOM05D006986 ORTHO05D008714 1.8e-24 116.7 170 48.2
CDE07G1909 Ceratophyllum demersum HOM05D006986 ORTHO05D008714 3.0e-24 115.9 163 47.2
SalBow2G1752 Salvia bowleyana HOM05D006986 ORTHO05D008714 3.0e-24 115.9 169 47.9
ECA240G2743 Erigeron canadensis HOM05D006986 ORTHO05D008714 5.2e-24 115.2 165 50.3
CDE12G0683 Ceratophyllum demersum HOM05D006986 ORTHO05D008714 6.7e-24 114.8 162 46.9
EL10Ac7g15912 Beta vulgaris HOM05D000133 ORTHO05D000259 1.1e-23 114.0 160 48.8
RcHm_v2.0_Chr5g0071561 Rosa chinensis HOM05D006986 ORTHO05D008714 2.0e-23 113.2 170 47.1
BolC8t47074H Brassica oleracea HOM05D006986 ORTHO05D008714 4.4e-23 112.1 162 50.0
AUR62001879 Chenopodium quinoa HOM05D006986 ORTHO05D008714 4.4e-23 112.1 160 50.0
Carub.0001s0631 Capsella rubella HOM05D006986 ORTHO05D008714 7.5e-23 111.3 154 51.9
unitig_60.g25554 Utricularia gibba HOM05D006986 ORTHO05D008714 1.7e-22 110.2 141 46.1
Thhalv10008798m.g Eutrema salsugineum HOM05D006986 ORTHO05D008714 2.2e-22 109.8 158 45.6
Aqoxy1G01299 Aquilegia oxysepala HOM05D006986 ORTHO05D008714 3.7e-22 109.0 175 48.0
PSO765G0136 Papaver somniferum HOM05D006986 ORTHO05D008714 4.8e-22 108.6 171 48.5
A08p35810 Brassica napus HOM05D006986 ORTHO05D008714 1.1e-21 107.5 162 48.1
BraA08t35488Z Brassica rapa HOM05D006986 ORTHO05D008714 1.1e-21 107.5 162 48.1
CARHR006710 Cardamine hirsuta HOM05D006986 ORTHO05D008714 1.4e-21 107.1 160 50.6
C08p02790 Brassica napus HOM05D006986 ORTHO05D008714 2.4e-21 106.3 164 48.2
BcaB03g13411 Brassica carinata HOM05D006986 ORTHO05D008714 3.1e-21 105.9 157 46.5
AL1G17080 Arabidopsis lyrata HOM05D006986 ORTHO05D008714 4.1e-21 105.5 151 47.0
Peaxi162Scf00222g00001 Petunia axillaris HOM05D006986 ORTHO05D008714 4.1e-21 105.5 159 49.7
Aa31LG1G8070 Aethionema arabicum HOM05D006986 ORTHO05D008714 7.0e-21 104.8 157 47.1
AT1G07020 Arabidopsis thaliana HOM05D006986 ORTHO05D008714 9.1e-21 104.4 151 49.7
Hund29010 Selenicereus undatus HOM05D006986 ORTHO05D008714 9.1e-21 104.4 182 46.2
Hund29014 Selenicereus undatus HOM05D006986 ORTHO05D008714 9.1e-21 104.4 182 46.2
Sp1g05740 Schrenkiella parvula HOM05D006986 ORTHO05D008714 7.7e-20 101.3 151 45.0
PSO170G2557 Papaver somniferum HOM05D006986 ORTHO05D008714 1.3e-19 100.5 144 43.1
Peaxi162Scf01176g00002 Petunia axillaris HOM05D006986 ORTHO05D008714 2.2e-19 99.8 150 50.0
HanXRQChr02g0033811 Helianthus annuus HOM05D006986 ORTHO05D008714 1.1e-18 97.4 170 45.3
PSO339G5371 Papaver somniferum HOM05D006986 ORTHO05D008714 1.1e-18 97.4 153 41.2
Actinidia32614 Actinidia chinensis HOM05D006986 ORTHO05D008714 1.5e-18 97.1 130 53.1
HPP92_003693 Vanilla planifolia HOM05D006986 ORTHO05D008714 1.9e-18 96.7 155 41.9
TPR.G35622 Trifolium pratense HOM05D006986 ORTHO05D008714 5.5e-18 95.1 92 59.8
PSO349G0135 Papaver somniferum HOM05D006986 ORTHO05D008714 2.6e-15 86.3 113 45.1
ATR0174G018 Amborella trichopoda HOM05D006986 ORTHO05D008714 5.4e-13 78.6 145 38.6
FvH4_3g21494 Fragaria vesca HOM05D006986 ORTHO05D008714 9.1e-13 77.8 55 67.3
SEGI_39902 Sequoiadendron giganteum HOM05D006986 ORTHO05D008714 2.7e-12 76.3 189 37.0
Glyma.06G163400 Glycine max HOM05D006986 ORTHO05D008714 8.5e-11 71.2 46 69.6
Hma1.2p1_1761F.1_g301290 Hydrangea macrophylla HOM05D006986 ORTHO05D008714 7.5e-07 58.2 34 70.6
Hma1.2p1_1761F.1_g301295 Hydrangea macrophylla HOM05D006986 ORTHO05D008714 7.5e-07 58.2 34 70.6


User provided reference genes

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