Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G353800 Theobroma cacao HOM05D006841 ORTHO05D008607 6.3e-288 993.4 505 100.0
Duzib170G1072 Durio zibethinus HOM05D006841 ORTHO05D008607 2.8e-264 914.8 505 91.3
COL.COLO4_11072 Corchorus olitorius HOM05D006841 ORTHO05D008607 3.5e-262 907.9 509 91.2
Duzib168G0722 Durio zibethinus HOM05D006841 ORTHO05D008607 4.0e-258 894.4 505 89.7
Gorai.009G112400 Gossypium raimondii HOM05D006841 ORTHO05D008607 2.0e-254 882.1 505 88.3
Gohir.A05G108000 Gossypium hirsutum HOM05D006841 ORTHO05D008607 1.0e-253 879.8 505 87.9
Gohir.D05G108200 Gossypium hirsutum HOM05D006841 ORTHO05D008607 3.8e-253 877.9 505 87.9
Ciclev10028251m.g Citrus clementina HOM05D006841 ORTHO05D008607 6.4e-224 780.8 488 81.1
Atru.chr3.4145 Acer truncatum HOM05D006841 ORTHO05D008607 1.2e-219 766.5 492 79.3
Dinv28672 Davidia involucrata HOM05D006841 ORTHO05D008607 8.1e-219 763.8 495 78.4
Potri.009G075200 Populus trichocarpa HOM05D006841 ORTHO05D008607 1.8e-218 762.7 511 75.7
Prupe.6G052600 Prunus persica HOM05D006841 ORTHO05D008607 6.8e-218 760.8 506 76.1
CSS0042618 Camellia sinensis var. sinensis HOM05D006841 ORTHO05D008607 2.4e-215 752.3 508 74.4
MD03G1062600 Malus domestica HOM05D006841 ORTHO05D008607 2.3e-213 745.7 506 75.1
CiPaw.14G056400 Carya illinoinensis HOM05D006841 ORTHO05D008607 6.6e-213 744.2 516 75.2
Sabra09G0057100 Salix brachista HOM05D006841 ORTHO05D008607 6.6e-213 744.2 508 74.6
CANSAT54G0320 Cannabis sativa HOM05D006841 ORTHO05D008607 2.5e-212 742.3 514 74.3
MD11G1066200 Malus domestica HOM05D006841 ORTHO05D008607 3.3e-212 741.9 506 74.3
TAR369G0096 Trochodendron aralioides HOM05D006841 ORTHO05D008607 3.1e-210 735.3 507 73.8
Actinidia34467 Actinidia chinensis HOM05D006841 ORTHO05D008607 6.8e-210 734.2 510 73.3
Manes.02G217600 Manihot esculenta HOM05D006841 ORTHO05D008607 2.9e-208 728.8 512 73.4
Haze_24381 Corylus avellana HOM05D006841 ORTHO05D008607 8.4e-208 727.2 543 70.9
RcHm_v2.0_Chr5g0070721 Rosa chinensis HOM05D006841 ORTHO05D008607 4.2e-207 724.9 506 72.9
PGR102G0989 Punica granatum HOM05D006841 ORTHO05D008607 1.6e-206 723.0 515 71.1
Glyma.11G167300 Glycine max HOM05D006841 ORTHO05D008607 2.7e-206 722.2 514 71.8
Glyma.18G059800 Glycine max HOM05D006841 ORTHO05D008607 2.7e-206 722.2 466 76.8
TAR636G1839 Trochodendron aralioides HOM05D006841 ORTHO05D008607 3.5e-206 721.8 511 72.0
QL01p039597 Quercus lobata HOM05D006841 ORTHO05D008607 4.6e-206 721.5 521 72.9
FAN11G0941 Fragaria x ananassa HOM05D006841 ORTHO05D008607 5.1e-205 718.0 469 76.5
CSS0014141 Camellia sinensis var. sinensis HOM05D006841 ORTHO05D008607 6.6e-205 717.6 508 71.7
Eucgr.B02230 Eucalyptus grandis HOM05D006841 ORTHO05D008607 6.6e-205 717.6 501 72.5
Phvul.006G071400 Phaseolus vulgaris HOM05D006841 ORTHO05D008607 8.7e-205 717.2 512 71.9
vmacro14612 Vaccinium macrocarpon HOM05D006841 ORTHO05D008607 1.1e-204 716.8 510 71.6
FvH4_3g39290 Fragaria vesca HOM05D006841 ORTHO05D008607 2.5e-204 715.7 469 76.3
arahy.Tifrunner.gnm1.ann1.UR06JS Arachis hypogaea HOM05D006841 ORTHO05D008607 9.6e-204 713.8 506 72.5
FAN25G3694 Fragaria x ananassa HOM05D006841 ORTHO05D008607 9.6e-204 713.8 469 76.1
CiPaw.13G073200 Carya illinoinensis HOM05D006841 ORTHO05D008607 1.3e-203 713.4 514 73.5
arahy.Tifrunner.gnm1.ann1.1QT3IR Arachis hypogaea HOM05D006841 ORTHO05D008607 1.1e-202 710.3 506 72.1
FAN21G2904 Fragaria x ananassa HOM05D006841 ORTHO05D008607 3.1e-202 708.8 469 75.7
Rhsim01G0239400 Rhododendron simsii HOM05D006841 ORTHO05D008607 5.8e-201 704.5 490 73.1
CsaV3_6G016010 Cucumis sativus L. HOM05D006841 ORTHO05D008607 9.9e-201 703.7 513 68.8
TWI79G1747 Tripterygium wilfordii HOM05D006841 ORTHO05D008607 1.7e-200 703.0 468 75.6
Solyc05g012140.3 Solanum lycopersicum HOM05D006841 ORTHO05D008607 8.4e-200 700.7 475 73.5
Sopen05g006930 Solanum pennellii HOM05D006841 ORTHO05D008607 1.1e-199 700.3 463 74.5
MELO3C026835.2 Cucumis melo HOM05D006841 ORTHO05D008607 3.2e-199 698.7 505 69.3
ClCG02G019390 Citrullus lanatus HOM05D006841 ORTHO05D008607 5.4e-199 698.0 513 67.8
Lalb_Chr18g0051231 Lupinus albus HOM05D006841 ORTHO05D008607 4.6e-198 694.9 496 70.6
PGSC0003DMG401028313 Solanum tuberosum HOM05D006841 ORTHO05D008607 7.9e-198 694.1 463 74.1
SalBow2G2391 Salvia bowleyana HOM05D006841 ORTHO05D008607 1.0e-197 693.7 452 76.3
Sc06g0008150 Simmondsia chinensis HOM05D006841 ORTHO05D008607 1.0e-197 693.7 506 69.8
Lj6g0024894 Lotus japonicus HOM05D006841 ORTHO05D008607 8.7e-197 690.6 520 67.9
Sed0019546 Sechium edule HOM05D006841 ORTHO05D008607 1.1e-196 690.3 513 67.1
CAN.G707.10 Capsicum annuum HOM05D006841 ORTHO05D008607 1.1e-194 683.7 462 74.0
Medtr3g465390 Medicago truncatula HOM05D006841 ORTHO05D008607 2.4e-194 682.6 513 67.1
MSTRG.12683 Avicennia marina HOM05D006841 ORTHO05D008607 4.0e-194 681.8 465 74.2
Oeu018490.1 Olea europaea HOM05D006841 ORTHO05D008607 4.0e-194 681.8 463 74.9
TPR.G32925 Trifolium pratense HOM05D006841 ORTHO05D008607 9.9e-193 677.2 512 68.0
Lj2A1088G41 Lonicera japonica HOM05D006841 ORTHO05D008607 1.7e-192 676.4 457 76.1
Peaxi162Scf01324g00238 Petunia axillaris HOM05D006841 ORTHO05D008607 3.8e-192 675.2 451 75.4
HanXRQChr01g0011601 Helianthus annuus HOM05D006841 ORTHO05D008607 1.6e-190 669.8 443 74.9
VMungo0540G0160 Vigna mungo HOM05D006841 ORTHO05D008607 2.1e-190 669.5 443 75.4
Psat5g157440 Pisum sativum HOM05D006841 ORTHO05D008607 1.0e-189 667.2 442 74.0
EL10Ac7g15887 Beta vulgaris HOM05D006841 ORTHO05D008607 3.7e-187 658.7 450 72.9
Hund05042 Selenicereus undatus HOM05D006841 ORTHO05D008607 9.0e-186 654.1 450 72.4
AUR62009700 Chenopodium quinoa HOM05D006841 ORTHO05D008607 4.9e-184 648.3 450 71.8
Lsat_1_v5_gn_5_173260 Lactuca sativa HOM05D006841 ORTHO05D008607 1.9e-183 646.4 459 71.0
AUR62036246 Chenopodium quinoa HOM05D006841 ORTHO05D008607 5.5e-183 644.8 450 71.6
THA.LOC104800754 Tarenaya hassleriana HOM05D006841 ORTHO05D008607 5.5e-183 644.8 512 65.4
Migut.N00773 Erythranthe guttata HOM05D006841 ORTHO05D008607 1.2e-182 643.7 472 69.3
Ah.15g096690 Amaranthus hybridus HOM05D006841 ORTHO05D008607 6.0e-182 641.3 468 69.2
Aqoxy1G01268 Aquilegia oxysepala HOM05D006841 ORTHO05D008607 7.9e-182 641.0 443 73.4
ECA248G2088 Erigeron canadensis HOM05D006841 ORTHO05D008607 4.8e-179 631.7 414 75.4
Aa31LG5G6580 Aethionema arabicum HOM05D006841 ORTHO05D008607 8.2e-179 630.9 514 63.6
AT2G30100 Arabidopsis thaliana HOM05D006841 ORTHO05D008607 8.2e-179 630.9 516 63.8
Ah.08g215320 Amaranthus hybridus HOM05D006841 ORTHO05D008607 2.4e-178 629.4 439 71.3
CARHR123400 Cardamine hirsuta HOM05D006841 ORTHO05D008607 3.1e-178 629.0 514 62.3
Thhalv10016546m.g Eutrema salsugineum HOM05D006841 ORTHO05D008607 6.9e-178 627.9 512 63.9
PSO017G2874 Papaver somniferum HOM05D006841 ORTHO05D008607 1.2e-177 627.1 499 65.1
Carub.0004s1120 Capsella rubella HOM05D006841 ORTHO05D008607 1.3e-176 623.6 516 62.6
Ca_14982_v3 Cicer arietinum L. HOM05D006841 ORTHO05D008607 1.4e-175 620.2 487 66.7
MBI15_g21765_MAGBIO Magnolia biondii HOM05D006841 ORTHO05D008607 1.4e-175 620.2 522 63.4
PSO349G0316 Papaver somniferum HOM05D006841 ORTHO05D008607 9.3e-175 617.5 504 64.1
AL4G24870 Arabidopsis lyrata HOM05D006841 ORTHO05D008607 1.2e-174 617.1 516 62.0
Sp4g12660 Schrenkiella parvula HOM05D006841 ORTHO05D008607 1.6e-174 616.7 509 64.0
C04p58980 Brassica napus HOM05D006841 ORTHO05D008607 4.3e-172 608.6 517 61.5
BraA04t17817Z Brassica rapa HOM05D006841 ORTHO05D008607 1.3e-171 607.1 520 59.8
unitig_94.g28363 Utricularia gibba HOM05D006841 ORTHO05D008607 1.6e-171 606.7 440 69.1
A04p22780 Brassica napus HOM05D006841 ORTHO05D008607 3.7e-171 605.5 518 59.8
BolC4t27410H Brassica oleracea HOM05D006841 ORTHO05D008607 4.8e-171 605.1 517 61.5
SGA_v2.0_scaffold104G30129 Striga asiatica HOM05D006841 ORTHO05D008607 3.4e-169 599.0 443 68.6
BcaC02g08056 Brassica carinata HOM05D006841 ORTHO05D008607 1.6e-166 590.1 507 61.1
CDE06G2104 Ceratophyllum demersum HOM05D006841 ORTHO05D008607 2.3e-165 586.3 508 60.2
GSVIVG01024686001 Vitis vinifera HOM05D006841 ORTHO05D008607 3.3e-164 582.4 380 77.9
Cc01_g14600 Coffea canephora HOM05D006841 ORTHO05D008607 3.6e-158 562.4 397 71.0
DCAR_007349 Daucus carota HOM05D006841 ORTHO05D008607 3.1e-154 549.3 353 75.6
Zm00001eb286480 Zea mays HOM05D006841 ORTHO05D008607 5.0e-144 515.4 420 58.6
Os05g0353300 Oryza sativa ssp. japonica HOM05D006841 ORTHO05D008607 1.2e-140 504.2 470 54.9
ATR0174G035 Amborella trichopoda HOM05D006841 ORTHO05D008607 1.5e-140 503.8 426 58.7
AL59U10050 Arabidopsis lyrata HOM05D006841 ORTHO05D008607 1.7e-128 463.8 455 57.1
Actinidia23875 Actinidia chinensis HOM05D006841 ORTHO05D008607 1.2e-126 457.6 295 76.9
Hma1.2p1_0146F.1_g065520 Hydrangea macrophylla HOM05D006841 ORTHO05D008607 2.7e-113 413.3 257 78.6
SEGI_38470 Sequoiadendron giganteum HOM05D006841 ORTHO05D008607 1.5e-111 407.5 424 48.3
HPP92_025104 Vanilla planifolia HOM05D006841 ORTHO05D008607 3.3e-111 406.4 342 59.1
CSS0012316 Camellia sinensis var. sinensis HOM05D006841 ORTHO05D008607 6.6e-96 355.5 422 50.0
Mapoly0068s0098 Marchantia polymorpha HOM05D006841 ORTHO05D008607 1.2e-92 344.7 448 42.4
Nn2g10947 Nelumbo nucifera HOM05D006841 ORTHO05D008607 1.5e-92 344.4 256 68.8
Nn2g13216 Nelumbo nucifera HOM05D006841 ORTHO05D008607 4.9e-83 312.8 254 66.1
Pp3c12_8330 Physcomitrium patens HOM05D006841 ORTHO05D008607 9.6e-71 271.9 425 37.4
Cpa.g.sc2.394 Carica papaya HOM05D006841 ORTHO05D008607 3.7e-70 270.0 150 85.3
SMO304G0125 Selaginella moellendorffii HOM05D006841 ORTHO05D008607 8.7e-64 248.8 417 36.0
MD11G1194000 Malus domestica HOM05D006841 ORTHO05D008607 1.1e-58 231.9 134 83.6
Oeu034210.1 Olea europaea HOM05D009051 ORTHO05D000140 1.0e-51 208.8 171 62.6
Oeu034513.1 Olea europaea HOM05D006841 ORTHO05D008607 1.5e-39 168.3 228 44.3
Oeu034517.1 Olea europaea HOM05D006841 ORTHO05D008607 8.2e-38 162.5 228 43.0
Oeu034514.1 Olea europaea HOM05D006841 ORTHO05D008607 3.0e-32 144.1 126 58.7
AagrBONN_evm.TU.Sc2ySwM_117.787 Anthoceros agrestis HOM05D006841 ORTHO05D008607 5.2e-32 143.3 190 41.1
Oeu034518.1 Olea europaea HOM05D006841 ORTHO05D008607 6.7e-32 142.9 148 52.7
VMungo0331G0799 Vigna mungo HOM05D000172 ORTHO05D004529 1.9e-26 124.8 107 57.0
Oeu019495.1 Olea europaea HOM05D006841 ORTHO05D008607 6.5e-19 99.8 143 41.3


User provided reference genes

Program Settings