Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G353500 Theobroma cacao HOM05D010097 ORTHO05D011665 1.8e-125 452.6 227 100.0
Gohir.A08G202300 Gossypium hirsutum HOM05D010097 ORTHO05D011665 1.7e-43 180.3 219 52.5
Gorai.004G233200 Gossypium raimondii HOM05D010097 ORTHO05D011665 6.5e-43 178.3 219 52.1
Gohir.D08G219100 Gossypium hirsutum HOM05D010097 ORTHO05D011665 1.1e-42 177.6 219 52.1
Gohir.D08G219001 Gossypium hirsutum HOM05D010097 ORTHO05D011665 3.8e-35 152.5 224 46.4
Gorai.004G233100 Gossypium raimondii HOM05D010097 ORTHO05D011665 6.5e-35 151.8 224 46.0
Gohir.A08G202150 Gossypium hirsutum HOM05D010097 ORTHO05D011665 9.4e-34 147.9 224 45.5
COL.COLO4_11076 Corchorus olitorius HOM05D010097 ORTHO05D011665 3.8e-27 125.9 223 42.2
QL01p039458 Quercus lobata HOM05D010097 ORTHO05D011665 2.1e-25 120.2 198 40.9
Potri.009G074900 Populus trichocarpa HOM05D010097 ORTHO05D011665 2.7e-25 119.8 182 38.5
Manes.02G212300 Manihot esculenta HOM05D010097 ORTHO05D011665 3.6e-25 119.4 179 40.2
Sabra09G0056800 Salix brachista HOM05D010097 ORTHO05D011665 2.0e-23 113.6 206 35.0
Manes.18G136421 Manihot esculenta HOM05D010097 ORTHO05D011665 4.4e-23 112.5 156 43.6
Haze_24378 Corylus avellana HOM05D010097 ORTHO05D011665 5.4e-21 105.5 175 39.4
CiPaw.13G073400 Carya illinoinensis HOM05D010097 ORTHO05D011665 1.2e-20 104.4 147 41.5
Cfa011739 Carpinus fangiana HOM05D010097 ORTHO05D011665 1.6e-20 104.0 214 36.0
Manes.18G137881 Manihot esculenta HOM05D010097 ORTHO05D011665 4.7e-17 92.4 110 46.4
Sed0022779 Sechium edule HOM05D010097 ORTHO05D011665 1.5e-15 87.4 103 43.7
ClCG02G019420 Citrullus lanatus HOM05D010097 ORTHO05D011665 7.5e-15 85.1 102 42.2
MELO3C026833.2 Cucumis melo HOM05D000734 ORTHO05D011665 8.3e-14 81.6 96 44.8
FAN11G3028 Fragaria x ananassa HOM05D040535 ORTHO05D011665 2.3e-11 73.6 92 46.7
FvH4_3g39200 Fragaria vesca HOM05D040535 ORTHO05D010376 3.0e-11 73.2 92 46.7
FAN21G3509 Fragaria x ananassa HOM05D040535 ORTHO05D011665 6.6e-11 72.0 92 45.7
CDE04G2153 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 1.9e-10 70.5 138 32.6
Solyc12g010800.2 Solanum lycopersicum HOM05D002172 ORTHO05D002167 4.3e-10 69.3 134 30.6
Sopen12g006170 Solanum pennellii HOM05D002172 ORTHO05D002167 4.3e-10 69.3 134 30.6
TWI79G0746 Tripterygium wilfordii HOM05D010097 ORTHO05D011665 5.6e-10 68.9 149 36.2
C08p33640 Brassica napus HOM05D002172 ORTHO05D002167 7.3e-10 68.6 117 33.3
BolC8t50961H Brassica oleracea HOM05D002172 ORTHO05D002167 7.3e-10 68.6 117 33.3
CAN.G318.5 Capsicum annuum HOM05D002172 ORTHO05D002167 9.5e-10 68.2 134 32.1
BcaC07g40326 Brassica carinata HOM05D002172 ORTHO05D002167 1.2e-09 67.8 117 33.3
PGSC0003DMG401007810 Solanum tuberosum HOM05D002172 ORTHO05D002167 1.6e-09 67.4 134 30.6
Peaxi162Scf00384g00069 Petunia axillaris HOM05D002172 ORTHO05D002167 2.8e-09 66.6 95 34.7
Sc12g0003320 Simmondsia chinensis HOM05D002172 ORTHO05D002167 2.8e-09 66.6 142 28.9
CSS0009595 Camellia sinensis var. sinensis HOM05D002172 ORTHO05D002167 4.7e-09 65.9 97 34.0
Pp3c5_20330 Physcomitrium patens HOM05D002172 ORTHO05D002167 8.0e-09 65.1 140 30.0
TWI14G1374 Tripterygium wilfordii HOM05D002172 ORTHO05D002167 8.0e-09 65.1 144 30.6
TAR624G0475 Trochodendron aralioides HOM05D002172 ORTHO05D002167 8.0e-09 65.1 146 28.8
BcaC02g12484 Brassica carinata HOM05D002172 ORTHO05D002167 1.0e-08 64.7 153 31.4
A05p02920 Brassica napus HOM05D002172 ORTHO05D002167 1.0e-08 64.7 153 31.4
C04p03550 Brassica napus HOM05D002172 ORTHO05D002167 1.0e-08 64.7 153 31.4
THA.LOC104810700 Tarenaya hassleriana HOM05D010097 ORTHO05D011665 1.0e-08 64.7 171 28.7
TAR624G0577 Trochodendron aralioides HOM05D002172 ORTHO05D002167 1.0e-08 64.7 146 28.8
CDE04G1435 Ceratophyllum demersum HOM05D065581 ORTHO05D002167 1.4e-08 64.3 97 37.1
TWI23G0692 Tripterygium wilfordii HOM05D002172 ORTHO05D002167 1.4e-08 64.3 175 29.1
Ah.01g003880 Amaranthus hybridus HOM05D002172 ORTHO05D002167 1.8e-08 63.9 121 30.6
Manes.13G139500 Manihot esculenta HOM05D002172 ORTHO05D002167 1.8e-08 63.9 177 25.4
MD17G1233900 Malus domestica HOM05D002172 ORTHO05D002167 2.3e-08 63.5 156 28.2
Pp3c6_7520 Physcomitrium patens HOM05D002172 ORTHO05D002167 2.3e-08 63.5 115 33.0
Nn1g01027 Nelumbo nucifera HOM05D002172 ORTHO05D011665 3.1e-08 63.2 100 37.0
PGR142G3291 Punica granatum HOM05D002172 ORTHO05D002167 3.1e-08 63.2 95 34.7
Dinv19980 Davidia involucrata HOM05D002172 ORTHO05D002167 4.0e-08 62.8 150 28.7
MBI15_g40755_MAGBIO Magnolia biondii HOM05D002172 ORTHO05D002167 5.2e-08 62.4 107 32.7
Sabra19G0105300 Salix brachista HOM05D002172 ORTHO05D002167 5.2e-08 62.4 91 35.2
AUR62038993 Chenopodium quinoa HOM05D002172 ORTHO05D002167 8.9e-08 61.6 113 31.0
Lj3g0018486 Lotus japonicus HOM05D002172 ORTHO05D002167 8.9e-08 61.6 101 31.7
HPP92_005197 Vanilla planifolia HOM05D002172 ORTHO05D002167 8.9e-08 61.6 100 33.0
Dinv14958 Davidia involucrata HOM05D002172 ORTHO05D002167 1.2e-07 61.2 101 31.7
HanXRQChr03g0071001 Helianthus annuus HOM05D002172 ORTHO05D002167 1.2e-07 61.2 99 32.3
CDE02G3937 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 1.5e-07 60.8 125 28.0
CDE03G0342 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 1.5e-07 60.8 96 32.3
Ca_18901_v3 Cicer arietinum L. HOM05D002172 ORTHO05D002167 2.0e-07 60.5 82 36.6
HPP92_020291 Vanilla planifolia HOM05D002172 ORTHO05D002167 2.0e-07 60.5 96 33.3
EL10Ac9g20854 Beta vulgaris HOM05D002172 ORTHO05D002167 2.6e-07 60.1 96 31.2
ECA240G3701 Erigeron canadensis HOM05D002172 ORTHO05D002167 2.6e-07 60.1 104 30.8
HanXRQChr13g0391241 Helianthus annuus HOM05D002172 ORTHO05D002167 2.6e-07 60.1 104 30.8
PGR102G2060 Punica granatum HOM05D010097 ORTHO05D011665 2.6e-07 60.1 117 33.3
Zm00001eb238570 Zea mays HOM05D002172 ORTHO05D002167 2.6e-07 60.1 101 35.6
vmacro12360 Vaccinium macrocarpon HOM05D002172 ORTHO05D002167 3.4e-07 59.7 142 31.0
Zm00001eb204490 Zea mays HOM05D002172 ORTHO05D002167 3.4e-07 59.7 83 36.1
Lalb_Chr03g0030941 Lupinus albus HOM05D002172 ORTHO05D002167 4.4e-07 59.3 126 25.4
Pp3c8_11470 Physcomitrium patens HOM05D002172 ORTHO05D002167 4.4e-07 59.3 106 29.2
Thecc.05G010100 Theobroma cacao HOM05D002172 ORTHO05D002167 4.4e-07 59.3 100 34.0
unitig_37.g12563 Utricularia gibba HOM05D002172 ORTHO05D002167 4.4e-07 59.3 108 29.6
MELO3C020524.2 Cucumis melo HOM05D039867 ORTHO05D010376 5.8e-07 58.9 105 31.4
Psat5g275000 Pisum sativum HOM05D002172 ORTHO05D002167 5.8e-07 58.9 79 36.7
Zm00001eb152810 Zea mays HOM05D002172 ORTHO05D002167 5.8e-07 58.9 95 32.6
Zm00001eb370720 Zea mays HOM05D002172 ORTHO05D002167 5.8e-07 58.9 95 31.6
Ah.04g164430 Amaranthus hybridus HOM05D002172 ORTHO05D007185 7.5e-07 58.5 84 33.3
C03p28180 Brassica napus HOM05D002172 ORTHO05D002167 7.5e-07 58.5 80 35.0
Mapoly0019s0040 Marchantia polymorpha HOM05D001917 ORTHO05D002167 7.5e-07 58.5 113 30.1
Os01g0756200 Oryza sativa ssp. japonica HOM05D002172 ORTHO05D002167 7.5e-07 58.5 95 31.6
Actinidia10984 Actinidia chinensis HOM05D002172 ORTHO05D002167 9.8e-07 58.2 147 29.9
A03p23630 Brassica napus HOM05D002172 ORTHO05D002167 9.8e-07 58.2 133 29.3
BraA03t11579Z Brassica rapa HOM05D002172 ORTHO05D002167 9.8e-07 58.2 133 29.3
Pp3c24_10470 Physcomitrium patens HOM05D002172 ORTHO05D002167 9.8e-07 58.2 101 27.7
Sed0000970 Sechium edule HOM05D011591 ORTHO05D010376 9.8e-07 58.2 103 32.0
Ca_04024_v3 Cicer arietinum L. HOM05D002172 ORTHO05D002167 1.7e-06 57.4 120 27.5
Manes.03G103800 Manihot esculenta HOM05D002172 ORTHO05D002167 2.2e-06 57.0 96 32.3
Pp3c1_7300 Physcomitrium patens HOM05D000516 ORTHO05D002167 2.2e-06 57.0 96 34.4
Os01g0211800 Oryza sativa ssp. japonica HOM05D002172 ORTHO05D002167 3.7e-06 56.2 80 36.2
Potri.009G075000 Populus trichocarpa HOM05D020455 ORTHO05D010376 3.7e-06 56.2 104 30.8
Rhsim06G0204100 Rhododendron simsii HOM05D002172 ORTHO05D002167 3.7e-06 56.2 152 28.3
Rhsim06G0135000 Rhododendron simsii HOM05D002172 ORTHO05D002167 4.9e-06 55.8 142 29.6
Lj8A152T85 Lonicera japonica HOM05D002172 ORTHO05D002167 6.4e-06 55.5 132 26.5
COL.COLO4_14489 Corchorus olitorius HOM05D002172 ORTHO05D002167 8.3e-06 55.1 138 27.5
Thhalv10016923m.g Eutrema salsugineum HOM05D002172 ORTHO05D002167 8.3e-06 55.1 120 30.8
Hma1.2p1_0416F.1_g148590 Hydrangea macrophylla HOM05D002172 ORTHO05D002167 8.3e-06 55.1 165 26.1
Nn1g04300 Nelumbo nucifera HOM05D002172 ORTHO05D002167 8.3e-06 55.1 142 26.8


User provided reference genes

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