Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G349300 Theobroma cacao HOM05D007495 ORTHO05D009552 2.4e-65 251.9 117 100.0
Thecc.09G349500 Theobroma cacao HOM05D007495 ORTHO05D009552 9.7e-51 203.4 99 96.0
Duzib147G1262 Durio zibethinus HOM05D007495 ORTHO05D009552 9.8e-35 150.2 100 74.0
Duzib168G1093 Durio zibethinus HOM05D007495 ORTHO05D009552 2.4e-33 145.6 102 68.6
Gorai.007G006500 Gossypium raimondii HOM05D007495 ORTHO05D009552 2.0e-27 125.9 102 60.8
Atru.chr3.3537 Acer truncatum HOM05D007495 ORTHO05D009552 3.4e-27 125.2 102 61.8
MD11G1146400 Malus domestica HOM05D007495 ORTHO05D009552 3.4e-27 125.2 107 58.9
ClCG02G021490 Citrullus lanatus HOM05D007495 ORTHO05D009552 4.4e-27 124.8 104 56.7
Haze_23728 Corylus avellana HOM05D007495 ORTHO05D009552 1.3e-26 123.2 106 55.7
Manes.04G014200 Manihot esculenta HOM05D007495 ORTHO05D009552 1.7e-26 122.9 105 57.1
Gohir.A11G006200 Gossypium hirsutum HOM05D007495 ORTHO05D009552 2.2e-26 122.5 102 58.8
Prupe.6G109500 Prunus persica HOM05D007495 ORTHO05D009552 3.7e-26 121.7 105 56.2
Ciclev10029419m.g Citrus clementina HOM05D007495 ORTHO05D009552 4.9e-26 121.3 110 53.6
GSVIVG01031491001 Vitis vinifera HOM05D007495 ORTHO05D009552 6.4e-26 120.9 107 52.3
Cfa010302 Carpinus fangiana HOM05D007495 ORTHO05D009552 8.3e-26 120.6 106 54.7
Nn6g35262 Nelumbo nucifera HOM05D007495 ORTHO05D009552 8.3e-26 120.6 106 51.9
Sed0010722 Sechium edule HOM05D007495 ORTHO05D009552 1.1e-25 120.2 103 54.4
CiPaw.13G124600 Carya illinoinensis HOM05D007495 ORTHO05D009552 2.4e-25 119.0 106 55.7
QL01p015526 Quercus lobata HOM05D007495 ORTHO05D009552 5.4e-25 117.9 106 50.9
SGA_v2.0_scaffold436G51603 Striga asiatica HOM05D007495 ORTHO05D009552 5.4e-25 117.9 106 52.8
MELO3C026944.2 Cucumis melo HOM05D007495 ORTHO05D009552 7.0e-25 117.5 104 52.9
Gohir.D11G005300 Gossypium hirsutum HOM05D007495 ORTHO05D009552 7.0e-25 117.5 102 57.8
Dinv34730 Davidia involucrata HOM05D007495 ORTHO05D009552 3.5e-24 115.2 116 47.4
FvH4_3g30910 Fragaria vesca HOM05D007495 ORTHO05D009552 3.5e-24 115.2 104 51.9
TAR633G0300 Trochodendron aralioides HOM05D007495 ORTHO05D009552 4.6e-24 114.8 109 50.5
CsaV3_6G014270 Cucumis sativus L. HOM05D007495 ORTHO05D009552 7.8e-24 114.0 104 52.9
FAN25G1473 Fragaria x ananassa HOM05D007495 ORTHO05D009552 1.3e-23 113.2 104 51.0
FAN21G3793 Fragaria x ananassa HOM05D007495 ORTHO05D009552 1.7e-23 112.8 104 50.0
Migut.N02567 Erythranthe guttata HOM05D007495 ORTHO05D009552 3.0e-23 112.1 108 56.5
RcHm_v2.0_Chr5g0057451 Rosa chinensis HOM05D007495 ORTHO05D009552 3.0e-23 112.1 104 51.9
Sabra04G0146300 Salix brachista HOM05D007495 ORTHO05D009552 3.9e-23 111.7 100 55.0
Lsat_1_v5_gn_2_96660 Lactuca sativa HOM05D007495 ORTHO05D009552 8.6e-23 110.5 116 49.1
AUR62014942 Chenopodium quinoa HOM05D007495 ORTHO05D009552 1.1e-22 110.2 101 57.4
AUR62029199 Chenopodium quinoa HOM05D007495 ORTHO05D009552 1.1e-22 110.2 101 57.4
Hma1.2p1_0051F.1_g029310 Hydrangea macrophylla HOM05D007495 ORTHO05D009552 1.5e-22 109.8 109 50.5
EL10Ac9g22596 Beta vulgaris HOM05D007495 ORTHO05D009552 3.3e-22 108.6 104 52.9
Lj2C1012G12 Lonicera japonica HOM05D007495 ORTHO05D009552 4.3e-22 108.2 107 53.3
CSS0034387 Camellia sinensis var. sinensis HOM05D007495 ORTHO05D009552 9.5e-22 107.1 117 45.3
PGR102G0900 Punica granatum HOM05D007495 ORTHO05D009552 9.5e-22 107.1 104 51.9
SalBow1G5708 Salvia bowleyana HOM05D007495 ORTHO05D009552 1.2e-21 106.7 100 49.0
Eucgr.B03939 Eucalyptus grandis HOM05D007495 ORTHO05D009552 1.6e-21 106.3 103 51.5
Potri.004G215300 Populus trichocarpa HOM05D007495 ORTHO05D009552 1.6e-21 106.3 101 54.5
SalBow3G3637 Salvia bowleyana HOM05D007495 ORTHO05D009552 1.6e-21 106.3 102 50.0
HanXRQChr09g0259381 Helianthus annuus HOM05D007495 ORTHO05D009552 3.6e-21 105.1 100 53.0
Oeu018477.1 Olea europaea HOM05D007495 ORTHO05D009552 3.6e-21 105.1 105 49.5
vmacro03264 Vaccinium macrocarpon HOM05D007495 ORTHO05D009552 3.6e-21 105.1 132 44.7
VMungo1080G0225 Vigna mungo HOM05D007495 ORTHO05D009552 8.0e-21 104.0 95 49.5
MSTRG.17767 Avicennia marina HOM05D007495 ORTHO05D009552 1.8e-20 102.8 106 48.1
CSS0017583 Camellia sinensis var. sinensis HOM05D007495 ORTHO05D009552 1.8e-20 102.8 115 44.3
Actinidia24137 Actinidia chinensis HOM05D007495 ORTHO05D009552 3.1e-20 102.1 111 48.6
Hund08367 Selenicereus undatus HOM05D007495 ORTHO05D009552 4.0e-20 101.7 105 47.6
Aqoxy1G01135 Aquilegia oxysepala HOM05D007495 ORTHO05D009552 5.2e-20 101.3 99 50.5
Nitab4.5_0000329g0280 Nicotiana tabacum HOM05D007495 ORTHO05D009552 6.8e-20 100.9 114 46.5
Nitab4.5_0005092g0010 Nicotiana tabacum HOM05D007495 ORTHO05D009552 1.2e-19 100.1 114 46.5
Cc01_g10460 Coffea canephora HOM05D007495 ORTHO05D009552 1.5e-19 99.8 117 44.4
Phvul.005G131100 Phaseolus vulgaris HOM05D007495 ORTHO05D009552 2.6e-19 99.0 95 48.4
Rhsim13G0099600 Rhododendron simsii HOM05D007495 ORTHO05D009552 2.6e-19 99.0 115 45.2
AL4G22050 Arabidopsis lyrata HOM05D007495 ORTHO05D009552 5.8e-19 97.8 96 49.0
Lalb_Chr24g0394861 Lupinus albus HOM05D007495 ORTHO05D009552 5.8e-19 97.8 108 45.4
Glyma.13G322700 Glycine max HOM05D007495 ORTHO05D009552 7.5e-19 97.4 93 49.5
AT2G28105 Arabidopsis thaliana HOM05D007495 ORTHO05D009552 2.9e-18 95.5 96 47.9
Thhalv10017338m.g Eutrema salsugineum HOM05D007495 ORTHO05D009552 1.1e-17 93.6 94 48.9
THA.LOC104800583 Tarenaya hassleriana HOM05D007495 ORTHO05D009552 1.1e-17 93.6 110 43.6
A03p26400 Brassica napus HOM05D007495 ORTHO05D009552 1.4e-17 93.2 104 43.3
BraA03t11855Z Brassica rapa HOM05D007495 ORTHO05D009552 1.4e-17 93.2 104 43.3
Carub.0004s0888 Capsella rubella HOM05D007495 ORTHO05D009552 1.4e-17 93.2 96 46.9
BcaB01g03091 Brassica carinata HOM05D007495 ORTHO05D009552 1.9e-17 92.8 98 45.9
Peaxi162Scf00892g00019 Petunia axillaris HOM05D007495 ORTHO05D009552 3.2e-17 92.0 113 46.0
SEGI_19183 Sequoiadendron giganteum HOM05D007495 ORTHO05D009552 5.4e-17 91.3 95 44.2
BcaC01g04959 Brassica carinata HOM05D007495 ORTHO05D009552 7.0e-17 90.9 99 44.4
C03p31690 Brassica napus HOM05D007495 ORTHO05D009552 7.0e-17 90.9 99 44.4
BolC3t15512H Brassica oleracea HOM05D007495 ORTHO05D009552 7.0e-17 90.9 99 44.4
HPP92_026750 Vanilla planifolia HOM05D007495 ORTHO05D009552 9.2e-17 90.5 90 51.1
Sp4g10910 Schrenkiella parvula HOM05D007495 ORTHO05D009552 1.2e-16 90.1 104 44.2
THA.LOC104808393 Tarenaya hassleriana HOM05D007495 ORTHO05D009552 1.2e-16 90.1 103 45.6
CARHR120870 Cardamine hirsuta HOM05D007495 ORTHO05D009552 1.6e-16 89.7 95 46.3
arahy.Tifrunner.gnm1.ann1.KUS9HA Arachis hypogaea HOM05D007495 ORTHO05D009552 2.7e-16 89.0 100 43.0
Ah.01g003160 Amaranthus hybridus HOM05D007495 ORTHO05D009552 4.6e-16 88.2 103 47.6
arahy.Tifrunner.gnm1.ann1.F5YJ3L Arachis hypogaea HOM05D007495 ORTHO05D009552 6.0e-16 87.8 100 43.0
DCAR_018778 Daucus carota HOM05D007495 ORTHO05D009552 6.0e-16 87.8 119 40.3
PGSC0003DMG400000407 Solanum tuberosum HOM05D007495 ORTHO05D009552 6.0e-16 87.8 110 43.6
Sopen11g025970 Solanum pennellii HOM05D007495 ORTHO05D009552 7.8e-16 87.4 112 43.8
PSO210G3489 Papaver somniferum HOM05D007495 ORTHO05D009552 1.3e-15 86.7 106 40.6
Solyc11g066240.3 Solanum lycopersicum HOM05D007495 ORTHO05D009552 1.3e-15 86.7 113 41.6
PGSC0003DMG400010906 Solanum tuberosum HOM05D007495 ORTHO05D009552 2.3e-15 85.9 111 41.4
PSO210G2188 Papaver somniferum HOM05D007495 ORTHO05D009552 3.9e-15 85.1 106 40.6
ATR1132G058 Amborella trichopoda HOM05D007495 ORTHO05D009552 5.1e-15 84.7 99 42.4
Sopen01g017570 Solanum pennellii HOM05D007495 ORTHO05D009552 5.1e-15 84.7 110 43.6
QL01p015485 Quercus lobata HOM05D007495 ORTHO05D000007 6.6e-15 84.3 78 51.3
Solyc01g034070.2 Solanum lycopersicum HOM05D007495 ORTHO05D009552 1.1e-14 83.6 111 40.5
MBI11_g41957_MAGBIO Magnolia biondii HOM05D007495 ORTHO05D009552 3.3e-14 82.0 113 39.8
Aa31LG5G8040 Aethionema arabicum HOM05D002446 ORTHO05D002941 1.1e-12 77.0 103 42.7
arahy.Tifrunner.gnm1.ann1.48A6J1 Arachis hypogaea HOM05D007495 ORTHO05D009552 1.4e-12 76.6 87 43.7
Pp3c2_14140 Physcomitrium patens HOM05D007495 ORTHO05D009552 1.5e-11 73.2 108 38.9
CDE08G1192 Ceratophyllum demersum HOM05D007495 ORTHO05D009552 2.0e-11 72.8 89 43.8
AagrBONN_evm.TU.Sc2ySwM_228.3308 Anthoceros agrestis HOM05D007495 ORTHO05D009552 1.7e-10 69.7 100 37.0
unitig_27.g25050 Utricularia gibba HOM05D007495 ORTHO05D009552 4.1e-09 65.1 100 35.0
COL.COLO4_31833 Corchorus olitorius HOM05D000070 ORTHO05D005950 5.4e-09 64.7 39 76.9
CAN.G546.21 Capsicum annuum HOM05D007495 ORTHO05D009552 8.6e-07 57.4 58 50.0


User provided reference genes

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