Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 0.0e+00 1103.2 568 100.0
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 5.2e-299 1030.4 568 92.6
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 3.0e-294 1014.6 568 91.7
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 8.0e-292 1006.5 568 91.2
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 3.1e-283 978.0 568 88.9
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 1.4e-272 942.6 499 94.6
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 6.2e-252 874.0 569 82.4
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 6.7e-246 854.0 600 78.2
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 2.2e-236 822.4 566 74.7
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 2.1e-231 805.8 563 74.1
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 1.7e-228 796.2 570 72.1
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 6.9e-227 790.8 564 73.6
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 1.1e-224 783.5 563 70.9
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 2.1e-223 779.2 564 70.7
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 3.6e-223 778.5 564 70.7
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 3.3e-221 771.9 570 68.6
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 5.7e-221 771.2 564 69.9
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 2.2e-220 769.2 571 70.1
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 4.8e-220 768.1 561 70.8
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 4.1e-219 765.0 570 70.0
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 7.7e-218 760.8 571 69.7
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.3e-217 760.0 571 69.5
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 6.5e-217 757.7 564 70.0
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 1.1e-216 756.9 570 67.9
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.5e-216 755.7 568 70.1
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 2.5e-216 755.7 571 68.0
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 9.4e-216 753.8 575 68.7
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 2.1e-215 752.7 570 68.2
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 4.7e-215 751.5 571 69.2
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 1.1e-211 740.3 566 67.3
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 2.4e-211 739.2 568 68.8
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 5.3e-211 738.0 575 65.7
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 1.2e-210 736.9 553 70.5
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 1.2e-210 736.9 569 68.7
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 3.8e-209 731.9 570 68.1
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 5.0e-209 731.5 515 74.2
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 5.0e-209 731.5 574 67.9
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 4.2e-208 728.4 561 67.2
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 5.5e-208 728.0 560 67.3
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 5.5e-208 728.0 561 67.2
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 9.4e-208 727.2 563 67.3
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 9.4e-208 727.2 562 66.4
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 9.4e-208 727.2 562 66.9
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 1.6e-207 726.5 564 66.5
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 4.7e-207 724.9 571 65.5
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 8.0e-207 724.2 562 66.4
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 1.0e-206 723.8 601 64.1
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 2.3e-206 722.6 561 66.3
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 3.0e-206 722.2 563 66.3
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 4.0e-206 721.8 571 65.7
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 2.6e-205 719.2 561 66.1
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 2.6e-205 719.2 561 66.1
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 5.7e-205 718.0 564 66.3
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 9.7e-205 717.2 563 66.1
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 2.2e-204 716.1 563 65.9
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 8.2e-204 714.1 571 65.0
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 8.2e-204 714.1 561 66.1
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 2.4e-203 712.6 588 65.6
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 4.1e-203 711.8 565 66.2
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 5.3e-203 711.4 596 62.9
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 7.0e-203 711.1 500 70.8
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 7.0e-203 711.1 563 66.3
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 1.6e-202 709.9 565 66.4
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 2.0e-202 709.5 568 65.1
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 1.0e-201 707.2 576 66.5
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 6.5e-201 704.5 567 64.0
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 1.5e-200 703.4 578 64.2
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 9.4e-200 700.7 568 66.0
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 2.1e-199 699.5 562 66.0
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 2.7e-199 699.1 565 66.0
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 8.0e-199 697.6 566 64.0
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 1.8e-198 696.4 569 62.6
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 2.3e-198 696.0 569 62.9
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 1.7e-196 689.9 569 64.0
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 1.7e-196 689.9 580 62.9
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 4.8e-196 688.3 565 64.1
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 7.0e-195 684.5 572 63.1
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 1.2e-194 683.7 564 64.0
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 4.5e-194 681.8 565 63.5
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 2.3e-193 679.5 572 63.1
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 2.9e-193 679.1 565 63.9
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 9.5e-192 674.1 572 63.1
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 7.5e-189 664.5 589 62.0
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 7.8e-186 654.4 653 57.9
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 8.3e-180 634.4 571 60.8
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.9e-179 633.3 349 92.6
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 2.0e-178 629.8 504 65.5
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 1.0e-177 627.5 602 58.0
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 1.3e-177 627.1 468 67.1
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 3.9e-177 625.5 590 58.1
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 3.9e-177 625.5 571 59.7
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 1.1e-176 624.0 464 69.0
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 2.3e-174 616.3 481 65.3
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 3.1e-174 615.9 575 60.2
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 2.3e-169 599.7 505 63.2
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 1.5e-168 597.0 581 58.0
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 3.1e-166 589.3 564 58.2
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 2.6e-165 586.3 503 62.0
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 9.9e-165 584.3 481 62.4
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 1.5e-160 570.5 566 58.1
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 2.4e-158 563.1 549 58.1
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 5.1e-153 545.4 569 55.2
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 2.8e-151 539.7 571 51.5
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 4.2e-147 525.8 483 58.0
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 4.6e-146 522.3 591 52.5
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 1.1e-144 517.7 514 53.3
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 9.6e-144 514.6 545 51.2
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 7.9e-138 495.0 349 72.2
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.8e-134 483.8 340 72.1
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 6.0e-130 468.8 403 62.0
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 1.5e-128 464.2 525 51.2
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 6.0e-122 442.2 410 60.0
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 1.2e-117 427.9 365 62.2
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 2.3e-113 413.7 486 48.8
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 2.5e-112 410.2 242 83.9
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 2.5e-112 410.2 242 83.9
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.3e-111 407.9 240 86.2
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 1.4e-110 404.4 394 56.3
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 5.3e-110 402.5 305 66.6
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 6.1e-106 389.0 429 53.1
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 1.2e-101 374.8 397 54.4
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 1.5e-101 374.4 234 79.1
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 1.3e-95 354.8 418 50.5
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 2.2e-95 354.0 279 64.5
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 4.5e-93 346.3 192 89.1
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 7.7e-93 345.5 330 54.2
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 1.7e-84 317.8 573 37.3
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 6.5e-84 315.8 381 50.7
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 4.1e-78 296.6 583 34.8
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 7.0e-78 295.8 159 86.8
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 6.1e-74 282.7 462 41.6
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 3.7e-71 273.5 167 85.6
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.4e-65 255.0 143 90.9
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 3.4e-64 250.4 143 88.8
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 5.8e-64 249.6 143 83.9
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 5.0e-60 236.5 198 65.2
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 3.6e-58 230.3 134 86.6
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 3.4e-56 223.8 233 51.9
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 4.4e-56 223.4 128 86.7
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 2.5e-51 207.6 557 30.7
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 9.6e-43 179.1 499 30.7
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.5e-35 155.2 88 86.4
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 9.0e-33 146.0 92 79.3
FAN23G0725 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.7e-31 141.7 138 53.6
Os02g0142250 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 8.1e-26 122.9 174 44.3
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 8.1e-26 122.9 211 41.7
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 3.4e-24 117.5 257 35.0
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 1.6e-21 108.6 132 47.0
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 6.7e-20 103.2 210 31.9
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 1.6e-18 98.6 258 30.6
FAN10G3619 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.4e-17 94.7 52 88.5
MD00G1165500 Malus domestica HOM05D004776 ORTHO05D005777 1.5e-16 92.0 89 59.6
Atru.chr3.3551 Acer truncatum HOM05D004776 ORTHO05D005777 6.5e-15 86.7 45 86.7
Peaxi162Scf00351g00526 Petunia axillaris HOM05D004776 ORTHO05D005777 7.6e-08 63.2 318 25.5
PRCOL_00000088 Prasinoderma coloniale HOM05D004776 ORTHO05D005777 5.0e-07 60.5 199 27.6
COL.COLO4_21805 Corchorus olitorius HOM05D000365 ORTHO05D000154 2.5e-06 58.2 32 90.6


User provided reference genes

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