Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G347600 Theobroma cacao HOM05D007330 ORTHO05D009368 3.5e-86 321.6 165 100.0
Gohir.A05G106300 Gossypium hirsutum HOM05D007330 ORTHO05D009368 7.0e-71 270.8 163 83.4
Gohir.D05G106300 Gossypium hirsutum HOM05D007330 ORTHO05D009368 1.6e-70 269.6 163 82.8
CiPaw.13G117900 Carya illinoinensis HOM05D007330 ORTHO05D009368 1.4e-55 219.9 162 71.0
Ciclev10029423m.g Citrus clementina HOM05D007330 ORTHO05D009368 3.2e-55 218.8 163 70.6
Gorai.009G110400 Gossypium raimondii HOM05D007330 ORTHO05D009368 3.2e-55 218.8 137 81.8
TAR636G1893 Trochodendron aralioides HOM05D007330 ORTHO05D009368 2.0e-54 216.1 163 68.7
Potri.009G008400 Populus trichocarpa HOM05D007330 ORTHO05D009368 2.7e-54 215.7 165 67.3
COL.COLO4_34706 Corchorus olitorius HOM05D007330 ORTHO05D009368 6.6e-53 211.1 162 69.8
Manes.11G150100 Manihot esculenta HOM05D007330 ORTHO05D009368 4.3e-52 208.4 165 66.1
CSS0040476 Camellia sinensis var. sinensis HOM05D007330 ORTHO05D009368 5.6e-52 208.0 163 66.9
Dinv34698 Davidia involucrata HOM05D007330 ORTHO05D009368 1.1e-50 203.8 165 66.7
TWI31G1101 Tripterygium wilfordii HOM05D007330 ORTHO05D009368 5.2e-50 201.4 167 65.3
vmacro03274 Vaccinium macrocarpon HOM05D007330 ORTHO05D009368 3.7e-48 195.3 127 77.2
GSVIVG01031517001 Vitis vinifera HOM05D000070 ORTHO05D001255 4.9e-48 194.9 163 65.6
CANSAT35G1795 Cannabis sativa HOM05D007330 ORTHO05D009368 8.3e-48 194.1 132 75.8
Rhsim13G0098500 Rhododendron simsii HOM05D007330 ORTHO05D009368 8.3e-48 194.1 127 76.4
ClCG03G002650 Citrullus lanatus HOM05D007330 ORTHO05D009368 1.9e-47 193.0 165 65.5
Atru.chr3.3558 Acer truncatum HOM05D007330 ORTHO05D009368 5.4e-47 191.4 162 63.6
Glyma.11G195100 Glycine max HOM05D007330 ORTHO05D009368 7.1e-47 191.0 145 67.6
Hma1.2p1_0569F.1_g180250 Hydrangea macrophylla HOM05D007330 ORTHO05D009368 1.6e-46 189.9 162 64.8
QL01p015978 Quercus lobata HOM05D007330 ORTHO05D009368 1.6e-46 189.9 165 63.6
CsaV3_1G013380 Cucumis sativus L. HOM05D007330 ORTHO05D009368 4.6e-46 188.3 165 64.2
RcHm_v2.0_Chr5g0057841 Rosa chinensis HOM05D007330 ORTHO05D009368 6.0e-46 188.0 162 60.5
MSTRG.18683 Avicennia marina HOM05D007330 ORTHO05D009368 7.8e-46 187.6 139 69.1
MELO3C004968.2 Cucumis melo HOM05D007330 ORTHO05D009368 7.8e-46 187.6 164 64.0
PGR119G1592 Punica granatum HOM05D007330 ORTHO05D009368 7.8e-46 187.6 146 66.4
Glyma.12G079000 Glycine max HOM05D007330 ORTHO05D009368 1.7e-45 186.4 129 72.1
Lalb_Chr19g0137021 Lupinus albus HOM05D007330 ORTHO05D009368 2.3e-45 186.0 130 73.1
THA.LOC104814822 Tarenaya hassleriana HOM05D007330 ORTHO05D009368 2.3e-45 186.0 169 60.4
FvH4_3g31190 Fragaria vesca HOM05D007330 ORTHO05D009368 3.0e-45 185.7 127 70.1
FAN11G3216 Fragaria x ananassa HOM05D007330 ORTHO05D009368 3.0e-45 185.7 127 70.1
FAN25G0306 Fragaria x ananassa HOM05D007330 ORTHO05D009368 3.9e-45 185.3 127 70.1
Ca_19301_v3 Cicer arietinum L. HOM05D007330 ORTHO05D009368 1.1e-44 183.7 131 69.5
Eucgr.J00897 Eucalyptus grandis HOM05D007330 ORTHO05D009368 1.1e-44 183.7 164 60.4
FAN21G2017 Fragaria x ananassa HOM05D007330 ORTHO05D009368 2.5e-44 182.6 127 68.5
Sed0025524 Sechium edule HOM05D007330 ORTHO05D009368 4.3e-44 181.8 171 60.2
Migut.N02576 Erythranthe guttata HOM05D007330 ORTHO05D009368 9.5e-44 180.6 131 69.5
Lsat_1_v5_gn_1_63180 Lactuca sativa HOM05D007330 ORTHO05D009368 1.2e-43 180.3 166 60.2
Nn2g13766 Nelumbo nucifera HOM05D007330 ORTHO05D009368 1.2e-43 180.3 162 60.5
DCAR_018785 Daucus carota HOM05D007330 ORTHO05D009368 6.2e-43 177.9 118 73.7
Nitab4.5_0000567g0040 Nicotiana tabacum HOM05D007330 ORTHO05D009368 1.4e-42 176.8 138 63.0
Aa31LG4G14100 Aethionema arabicum HOM05D007330 ORTHO05D009368 1.8e-42 176.4 169 60.4
BcaC09g49699 Brassica carinata HOM05D007330 ORTHO05D009368 1.8e-42 176.4 152 65.1
C01p33810 Brassica napus HOM05D007330 ORTHO05D009368 1.8e-42 176.4 152 65.1
BolC1t03342H Brassica oleracea HOM05D007330 ORTHO05D009368 1.8e-42 176.4 152 65.1
A01p26570 Brassica napus HOM05D007330 ORTHO05D009368 2.3e-42 176.0 152 65.1
BraA01t02587Z Brassica rapa HOM05D007330 ORTHO05D009368 2.3e-42 176.0 152 65.1
Lj3g0015691 Lotus japonicus HOM05D007330 ORTHO05D009368 5.2e-42 174.9 127 69.3
CAN.G1577.6 Capsicum annuum HOM05D007330 ORTHO05D009368 6.8e-42 174.5 164 59.1
Cc01_g10610 Coffea canephora HOM05D007330 ORTHO05D009368 6.8e-42 174.5 113 74.3
PSO339G1528 Papaver somniferum HOM05D007330 ORTHO05D009368 8.9e-42 174.1 166 57.8
Sp5g16210 Schrenkiella parvula HOM05D007330 ORTHO05D009368 1.2e-41 173.7 160 61.2
BcaB05g23421 Brassica carinata HOM05D007330 ORTHO05D009368 1.5e-41 173.3 165 59.4
Thhalv10002688m.g Eutrema salsugineum HOM05D007330 ORTHO05D009368 1.5e-41 173.3 167 61.1
Carub.0005s1083 Capsella rubella HOM05D007330 ORTHO05D009368 2.6e-41 172.6 152 65.1
Medtr4g057845 Medicago truncatula HOM05D007330 ORTHO05D009368 3.4e-41 172.2 131 66.4
VMungo1127G0312 Vigna mungo HOM05D007330 ORTHO05D009368 3.4e-41 172.2 131 65.6
ECA248G2053 Erigeron canadensis HOM05D007330 ORTHO05D009368 9.9e-41 170.6 119 73.9
Solyc04g007410.4 Solanum lycopersicum HOM05D007330 ORTHO05D009368 9.9e-41 170.6 123 68.3
Actinidia07167 Actinidia chinensis HOM05D007330 ORTHO05D009368 1.7e-40 169.9 174 55.7
CARHR150920 Cardamine hirsuta HOM05D007330 ORTHO05D009368 1.7e-40 169.9 162 56.8
AT3G45050 Arabidopsis thaliana HOM05D007330 ORTHO05D009368 2.9e-40 169.1 164 58.5
Sopen04g002470 Solanum pennellii HOM05D007330 ORTHO05D009368 2.9e-40 169.1 123 68.3
Sc15g0001620 Simmondsia chinensis HOM05D007330 ORTHO05D009368 3.8e-40 168.7 119 71.4
HanXRQChr11g0346411 Helianthus annuus HOM05D007330 ORTHO05D009368 4.9e-40 168.3 164 57.9
MBI18_g25263_MAGBIO Magnolia biondii HOM05D007330 ORTHO05D009368 1.1e-39 167.2 172 54.7
Psat4g155560 Pisum sativum HOM05D007330 ORTHO05D009368 1.1e-39 167.2 129 67.4
arahy.Tifrunner.gnm1.ann1.PP0PHB Arachis hypogaea HOM05D007330 ORTHO05D009368 1.4e-39 166.8 133 67.7
arahy.Tifrunner.gnm1.ann1.V5GM9G Arachis hypogaea HOM05D007330 ORTHO05D009368 1.9e-39 166.4 124 71.0
Ah.01g003130 Amaranthus hybridus HOM05D007330 ORTHO05D009368 3.2e-39 165.6 163 55.2
MD11G1142300 Malus domestica HOM05D007330 ORTHO05D009368 3.2e-39 165.6 162 54.3
CDE09G0261 Ceratophyllum demersum HOM05D007330 ORTHO05D008128 5.4e-39 164.9 128 62.5
SGA_v2.0_scaffold116G32214 Striga asiatica HOM05D007330 ORTHO05D009368 9.2e-39 164.1 102 74.5
Sabra09G0004900 Salix brachista HOM05D007330 ORTHO05D009368 2.3e-37 159.5 137 59.9
PSO801G0259 Papaver somniferum HOM05D007330 ORTHO05D009368 5.6e-36 154.8 163 54.6
AUR62022766 Chenopodium quinoa HOM05D007330 ORTHO05D009368 3.6e-35 152.1 125 60.8
AL5G23540 Arabidopsis lyrata HOM05D007330 ORTHO05D009368 1.4e-34 150.2 167 53.9
Phvul.011G083600 Phaseolus vulgaris HOM05D007330 ORTHO05D009368 1.8e-34 149.8 95 72.6
Peaxi162Scf00064g00193 Petunia axillaris HOM05D007330 ORTHO05D009368 6.9e-34 147.9 115 62.6
Prupe.6G107600 Prunus persica HOM05D007330 ORTHO05D009368 1.2e-33 147.1 138 57.2
Lj1C194T4 Lonicera japonica HOM05D007330 ORTHO05D009368 4.9e-32 141.7 98 74.5
Lj1A195G28 Lonicera japonica HOM05D007330 ORTHO05D009368 2.4e-31 139.4 125 60.8
Cpa.g.sc65.31 Carica papaya HOM05D007330 ORTHO05D009368 6.0e-30 134.8 94 75.5
Peaxi162Scf00597g00033 Petunia axillaris HOM05D007330 ORTHO05D009368 1.3e-29 133.7 152 50.0
Nitab4.5_0003325g0010 Nicotiana tabacum HOM05D007330 ORTHO05D009368 3.0e-29 132.5 130 56.2
HPP92_007165 Vanilla planifolia HOM05D007330 ORTHO05D009368 3.3e-28 129.0 128 53.9
PGSC0003DMG400005973 Solanum tuberosum HOM05D007330 ORTHO05D009368 4.3e-28 128.6 104 65.4
Aqoxy2G01788 Aquilegia oxysepala HOM05D007330 ORTHO05D009368 1.3e-27 127.1 93 72.0
Haze_23760 Corylus avellana HOM05D007330 ORTHO05D009368 9.0e-26 120.9 169 46.2
SEGI_17989 Sequoiadendron giganteum HOM05D007330 ORTHO05D009368 3.4e-25 119.0 127 49.6
Hund08155 Selenicereus undatus HOM05D007330 ORTHO05D009368 4.5e-25 118.6 135 51.9
Pp3c18_13360 Physcomitrium patens HOM05D007330 ORTHO05D009368 1.9e-23 113.2 124 47.6
Peaxi162Scf00958g00023 Petunia axillaris HOM05D007330 ORTHO05D009368 5.4e-23 111.7 92 64.1
Os06g0731300 Oryza sativa ssp. japonica HOM05D007330 ORTHO05D009368 1.6e-22 110.2 71 64.8
AagrBONN_evm.TU.Sc2ySwM_228.4164 Anthoceros agrestis HOM05D007330 ORTHO05D009368 2.5e-20 102.8 110 50.9
CBR_g54316 Chara braunii HOM05D007330 ORTHO05D009368 6.2e-19 98.2 115 44.3
MD03G1125100 Malus domestica HOM05D007330 ORTHO05D009368 5.3e-18 95.1 129 43.4
AUR62029217 Chenopodium quinoa HOM05D007330 ORTHO05D009368 9.0e-18 94.4 115 48.7
SMO275G0064 Selaginella moellendorffii HOM05D007330 ORTHO05D009368 3.8e-16 89.0 126 41.3
SMO367G0878 Selaginella moellendorffii HOM05D007330 ORTHO05D009368 6.4e-16 88.2 126 41.3
Mapoly0184s0021 Marchantia polymorpha HOM05D007330 ORTHO05D009368 1.2e-14 84.0 138 37.7
Oeu013536.1 Olea europaea HOM05D000070 ORTHO05D001255 6.7e-13 78.2 118 44.1
arahy.Tifrunner.gnm1.ann1.N36MJA Arachis hypogaea HOM05D007330 ORTHO05D009368 6.2e-11 71.6 49 65.3
EL10Ac9g22568 Beta vulgaris HOM05D007330 ORTHO05D009368 1.1e-10 70.9 121 38.8
Actinidia24129 Actinidia chinensis HOM05D000070 ORTHO05D001255 1.5e-09 67.0 69 58.0
FAN16G2470 Fragaria x ananassa HOM05D007330 ORTHO05D009368 2.9e-08 62.8 53 66.0


User provided reference genes

Program Settings