Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 8.5e-91 337.0 176 100.0
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 1.2e-57 226.9 139 86.3
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 9.2e-53 210.7 139 80.6
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 5.8e-47 191.4 139 71.9
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.2e-45 185.7 139 70.5
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 3.2e-45 185.7 139 70.5
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 1.3e-43 180.3 139 67.6
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.5e-42 176.8 141 68.1
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.2e-41 173.7 141 66.0
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.8e-41 172.6 141 65.2
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 3.6e-41 172.2 139 64.7
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 6.2e-41 171.4 140 72.1
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 8.1e-41 171.0 138 64.5
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 1.4e-40 170.2 140 64.3
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 4.9e-38 161.8 149 57.0
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 6.4e-38 161.4 115 75.7
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 1.4e-37 160.2 142 61.3
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 1.9e-37 159.8 151 56.3
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 4.1e-37 158.7 140 68.6
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 7.1e-37 157.9 126 61.1
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 9.2e-37 157.5 139 61.2
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 9.2e-37 157.5 137 59.1
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 1.2e-36 157.1 145 61.4
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.6e-36 156.8 131 62.6
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 2.1e-36 156.4 132 59.1
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 2.7e-36 156.0 144 57.6
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 6.0e-36 154.8 142 58.5
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 7.8e-36 154.5 132 59.8
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 7.8e-36 154.5 145 60.7
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 1.7e-35 153.3 139 62.6
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 1.7e-35 153.3 140 57.9
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 1.7e-35 153.3 132 59.1
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 3.0e-35 152.5 131 59.5
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 3.9e-35 152.1 149 57.0
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 5.1e-35 151.8 130 58.5
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 8.6e-35 151.0 145 60.0
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 8.6e-35 151.0 141 56.7
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 1.5e-34 150.2 130 57.7
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.5e-34 150.2 130 57.7
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.9e-34 149.8 130 57.7
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 1.9e-34 149.8 133 57.9
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 2.5e-34 149.4 129 62.0
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 3.3e-34 149.1 127 58.3
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 3.3e-34 149.1 140 57.1
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 7.3e-34 147.9 135 61.5
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 4.7e-33 145.2 139 60.4
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 1.4e-32 143.7 136 58.8
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 2.4e-32 142.9 124 57.3
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 3.1e-32 142.5 131 57.3
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 2.0e-31 139.8 137 54.7
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 2.0e-31 139.8 131 55.7
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 3.4e-31 139.0 132 55.3
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 6.4e-30 134.8 142 54.2
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 8.4e-30 134.4 132 50.8
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 1.1e-29 134.0 142 53.5
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 1.9e-29 133.3 134 53.0
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 7.1e-29 131.3 132 55.3
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 9.2e-29 131.0 124 54.8
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 1.2e-28 130.6 133 49.6
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 1.6e-28 130.2 131 56.5
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 2.7e-28 129.4 140 52.9
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 3.5e-28 129.0 152 49.3
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 7.8e-28 127.9 132 50.0
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 7.8e-28 127.9 152 49.3
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 1.0e-27 127.5 126 57.1
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 2.3e-27 126.3 146 50.7
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 6.6e-27 124.8 142 49.3
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 1.1e-26 124.0 131 48.9
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 1.5e-26 123.6 142 48.6
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 1.9e-26 123.2 131 51.9
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 2.5e-26 122.9 134 48.5
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 3.3e-26 122.5 126 55.6
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.2e-25 120.6 101 58.4
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 2.1e-25 119.8 141 48.2
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 2.1e-25 119.8 118 51.7
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 2.8e-25 119.4 131 51.1
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 2.8e-25 119.4 126 54.0
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 3.6e-25 119.0 126 50.0
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 4.7e-25 118.6 108 55.6
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 8.1e-25 117.9 124 51.6
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 8.1e-25 117.9 136 47.1
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 1.5e-23 113.6 121 56.2
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 3.4e-23 112.5 118 52.5
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 7.6e-23 111.3 135 48.1
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 9.9e-23 110.9 111 50.5
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 9.9e-23 110.9 111 50.5
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 2.9e-22 109.4 111 51.4
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 2.9e-22 109.4 112 51.8
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 3.8e-22 109.0 111 52.3
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 3.8e-22 109.0 111 52.3
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 4.9e-22 108.6 113 54.9
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 4.9e-22 108.6 129 45.7
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 4.9e-22 108.6 136 44.9
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 6.4e-22 108.2 111 52.3
Gorai.003G141500 Gossypium raimondii HOM05D005728 ORTHO05D005733 6.4e-22 108.2 105 63.8
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 8.4e-22 107.8 119 52.9
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 1.4e-21 107.1 111 49.5
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 1.4e-21 107.1 111 49.5
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 1.4e-21 107.1 131 48.1
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 1.9e-21 106.7 107 52.3
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 1.9e-21 106.7 112 50.9
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 2.4e-21 106.3 119 52.1
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 5.4e-21 105.1 104 52.9
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 7.1e-21 104.8 111 49.5
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 7.1e-21 104.8 111 49.5
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 7.1e-21 104.8 114 50.9
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 9.3e-21 104.4 111 48.6
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 9.3e-21 104.4 139 43.2
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 9.3e-21 104.4 135 43.0
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 1.6e-20 103.6 112 50.9
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 2.1e-20 103.2 140 44.3
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 1.3e-19 100.5 150 44.7
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 5.1e-19 98.6 127 43.3
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 2.5e-18 96.3 138 39.9
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 2.5e-18 96.3 138 41.3
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 4.3e-18 95.5 138 39.1
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 1.3e-17 94.0 126 46.8
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 1.6e-17 93.6 127 40.9
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 5.3e-16 88.6 120 44.2
SalBow3G1069 Salvia bowleyana HOM05D005728 ORTHO05D005733 7.6e-15 84.7 127 42.5
ATR0048G010 Amborella trichopoda HOM05D005728 ORTHO05D005733 1.7e-14 83.6 126 41.3
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 8.4e-14 81.3 133 39.1
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 3.2e-13 79.3 138 41.3
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 3.2e-13 79.3 138 41.3
BraA10t43864Z Brassica rapa HOM05D010860 ORTHO05D005733 4.2e-13 79.0 144 37.5
Oeu002871.1 Olea europaea HOM05D005728 ORTHO05D005733 1.6e-12 77.0 110 41.8
BcaB08g36363 Brassica carinata HOM05D010860 ORTHO05D005733 2.1e-12 76.6 146 39.7
SalBow3G4069 Salvia bowleyana HOM05D005728 ORTHO05D005733 3.5e-12 75.9 132 37.9
AL8G37240 Arabidopsis lyrata HOM05D010860 ORTHO05D005733 4.6e-12 75.5 130 36.2
AT5G60650 Arabidopsis thaliana HOM05D010860 ORTHO05D005733 4.6e-12 75.5 145 40.7
A10p17850 Brassica napus HOM05D010860 ORTHO05D005733 6.0e-12 75.1 143 35.7
Migut.N02604 Erythranthe guttata HOM05D005728 ORTHO05D005733 6.0e-12 75.1 131 35.9
arahy.Tifrunner.gnm1.ann1.C3ZM5V Arachis hypogaea HOM05D005728 ORTHO05D005733 7.9e-12 74.7 91 49.5
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 1.0e-11 74.3 132 36.4
BcaB01g04667 Brassica carinata HOM05D010860 ORTHO05D005733 3.9e-11 72.4 137 35.0
Thhalv10014945m.g Eutrema salsugineum HOM05D010860 ORTHO05D005733 1.1e-10 70.9 150 37.3
Carub.0008s2133 Capsella rubella HOM05D010860 ORTHO05D005733 1.5e-10 70.5 148 37.2
BolC9t58211H Brassica oleracea HOM05D010860 ORTHO05D005733 4.3e-10 68.9 134 35.1
Peaxi162Scf00101g00083 Petunia axillaris HOM05D005728 ORTHO05D005733 5.6e-10 68.6 131 33.6
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 7.4e-10 68.2 129 34.9
C09p53380 Brassica napus HOM05D010860 ORTHO05D005733 1.6e-09 67.0 134 34.3
BcaC04g19726 Brassica carinata HOM05D010860 ORTHO05D005733 2.1e-09 66.6 134 34.3
Oeu030182.1 Olea europaea HOM05D005728 ORTHO05D005733 6.2e-09 65.1 108 43.5
Oeu001270.1 Olea europaea HOM05D005728 ORTHO05D005733 3.1e-08 62.8 131 38.2
CARHR274330 Cardamine hirsuta HOM05D010860 ORTHO05D005733 1.2e-07 60.8 149 34.9
THA.LOC104810857 Tarenaya hassleriana HOM05D010860 ORTHO05D005733 7.6e-07 58.2 135 32.6
Nitab4.5_0000196g0120 Nicotiana tabacum HOM05D005728 ORTHO05D005733 2.2e-06 56.6 132 31.8
Sp6g22220 Schrenkiella parvula HOM05D010860 ORTHO05D005733 2.2e-06 56.6 143 31.5


User provided reference genes

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