Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G340600 Theobroma cacao HOM05D006634 ORTHO05D008282 8.6e-38 159.8 81 100.0
Gohir.A05G103000 Gossypium hirsutum HOM05D006634 ORTHO05D008282 5.7e-34 147.1 80 92.5
Gorai.009G107000 Gossypium raimondii HOM05D006634 ORTHO05D008282 3.7e-33 144.4 80 92.5
Duzib150G1350 Durio zibethinus HOM05D006634 ORTHO05D008282 1.4e-32 142.5 80 91.2
Duzib168G0710 Durio zibethinus HOM05D006634 ORTHO05D008282 1.4e-32 142.5 80 90.0
Gohir.D05G102700 Gossypium hirsutum HOM05D006634 ORTHO05D008282 2.4e-32 141.7 80 91.2
Gohir.A08G197800 Gossypium hirsutum HOM05D006634 ORTHO05D008282 1.2e-26 122.9 80 78.8
Gorai.004G228800 Gossypium raimondii HOM05D006634 ORTHO05D008282 1.5e-26 122.5 80 78.8
PGR102G2188 Punica granatum HOM05D006634 ORTHO05D008282 7.5e-26 120.2 80 73.8
Gohir.D08G215200 Gossypium hirsutum HOM05D006634 ORTHO05D008282 2.2e-25 118.6 80 77.5
CiPaw.13G113000 Carya illinoinensis HOM05D006634 ORTHO05D008282 4.9e-25 117.5 80 72.5
Ciclev10029701m.g Citrus clementina HOM05D006634 ORTHO05D008282 8.3e-25 116.7 80 75.0
Dinv32744 Davidia involucrata HOM05D006634 ORTHO05D008282 1.1e-24 116.3 80 72.5
RcHm_v2.0_Chr5g0059081 Rosa chinensis HOM05D006634 ORTHO05D008282 1.1e-24 116.3 80 73.8
Prupe.6G101400 Prunus persica HOM05D006634 ORTHO05D008282 1.4e-24 115.9 80 73.8
THA.LOC104800608 Tarenaya hassleriana HOM05D006634 ORTHO05D008282 3.2e-24 114.8 80 72.5
Aa31LG5G7790 Aethionema arabicum HOM05D006634 ORTHO05D008282 4.1e-24 114.4 80 72.5
DCAR_018812 Daucus carota HOM05D006634 ORTHO05D008282 4.1e-24 114.4 78 71.8
Atru.chr3.3630 Acer truncatum HOM05D006634 ORTHO05D008282 9.2e-24 113.2 80 72.5
TWI79G0418 Tripterygium wilfordii HOM05D006634 ORTHO05D008282 9.2e-24 113.2 80 73.8
CSS0031934 Camellia sinensis var. sinensis HOM05D006634 ORTHO05D008282 1.2e-23 112.8 80 70.0
CSS0041274 Camellia sinensis var. sinensis HOM05D006634 ORTHO05D008282 2.7e-23 111.7 80 71.2
Manes.11G145100 Manihot esculenta HOM05D006634 ORTHO05D008282 2.7e-23 111.7 77 70.1
GSVIVG01025186001 Vitis vinifera HOM05D006634 ORTHO05D008282 3.5e-23 111.3 80 71.2
Glyma.11G146700 Glycine max HOM05D006634 ORTHO05D008282 5.9e-23 110.5 80 71.2
CANSAT54G0287 Cannabis sativa HOM05D006634 ORTHO05D008282 7.8e-23 110.2 80 67.5
CANSAT54G1094 Cannabis sativa HOM05D006634 ORTHO05D008282 7.8e-23 110.2 80 67.5
Glyma.12G067600 Glycine max HOM05D006634 ORTHO05D008282 7.8e-23 110.2 79 70.9
Sp4g11250 Schrenkiella parvula HOM05D006634 ORTHO05D008282 1.0e-22 109.8 80 68.8
Lalb_Chr19g0137281 Lupinus albus HOM05D006634 ORTHO05D008282 3.9e-22 107.8 80 68.8
AL4G21590 Arabidopsis lyrata HOM05D006634 ORTHO05D008282 5.0e-22 107.5 80 67.5
CARHR121380 Cardamine hirsuta HOM05D006634 ORTHO05D008282 5.0e-22 107.5 80 68.8
CANSAT54G0497 Cannabis sativa HOM05D006634 ORTHO05D008282 1.1e-21 106.3 81 66.7
CANSAT54G1359 Cannabis sativa HOM05D006634 ORTHO05D008282 1.1e-21 106.3 81 66.7
CANSAT54G1657 Cannabis sativa HOM05D006634 ORTHO05D008282 1.1e-21 106.3 81 66.7
CANSAT54G2640 Cannabis sativa HOM05D006634 ORTHO05D008282 1.1e-21 106.3 81 66.7
CANSAT54G2841 Cannabis sativa HOM05D006634 ORTHO05D008282 1.1e-21 106.3 81 66.7
Lj3g0007397 Lotus japonicus HOM05D006634 ORTHO05D008282 1.1e-21 106.3 80 68.8
Eucgr.B02497 Eucalyptus grandis HOM05D006634 ORTHO05D008282 1.9e-21 105.5 80 67.5
Carub.0004s0938 Capsella rubella HOM05D006634 ORTHO05D008282 3.3e-21 104.8 80 66.2
Manes.04G021400 Manihot esculenta HOM05D006634 ORTHO05D008282 3.3e-21 104.8 77 66.2
CANSAT54G1506 Cannabis sativa HOM05D006634 ORTHO05D008282 4.3e-21 104.4 81 65.4
AT2G28430 Arabidopsis thaliana HOM05D006634 ORTHO05D008282 5.6e-21 104.0 80 65.0
BcaNung07072 Brassica carinata HOM05D006634 ORTHO05D008282 7.3e-21 103.6 80 62.5
BolC4t23789H Brassica oleracea HOM05D006634 ORTHO05D008282 7.3e-21 103.6 80 63.8
MD11G1136000 Malus domestica HOM05D006634 ORTHO05D008282 7.3e-21 103.6 80 70.0
Oeu002870.2 Olea europaea HOM05D006634 ORTHO05D008282 7.3e-21 103.6 83 65.1
TPR.G15540 Trifolium pratense HOM05D006634 ORTHO05D008282 7.3e-21 103.6 80 67.5
Phvul.011G079100 Phaseolus vulgaris HOM05D006634 ORTHO05D008282 9.5e-21 103.2 80 66.2
Thhalv10017488m.g Eutrema salsugineum HOM05D006634 ORTHO05D008282 1.2e-20 102.8 81 67.9
Nitab4.5_0000650g0190 Nicotiana tabacum HOM05D006634 ORTHO05D008282 1.6e-20 102.4 80 67.5
BraA07t29605Z Brassica rapa HOM05D006634 ORTHO05D008282 2.8e-20 101.7 80 62.5
FAN21G3892 Fragaria x ananassa HOM05D006634 ORTHO05D008282 2.8e-20 101.7 80 63.8
FAN25G2760 Fragaria x ananassa HOM05D006634 ORTHO05D008282 2.8e-20 101.7 81 63.0
A07p19000 Brassica napus HOM05D006634 ORTHO05D008282 3.6e-20 101.3 80 62.5
CDE06G1545 Ceratophyllum demersum HOM05D006634 ORTHO05D008282 3.6e-20 101.3 80 67.5
Psat7g225160 Pisum sativum HOM05D006634 ORTHO05D008282 3.6e-20 101.3 80 65.0
THA.LOC104826362 Tarenaya hassleriana HOM05D006634 ORTHO05D008282 3.6e-20 101.3 79 68.4
MD03G1117700 Malus domestica HOM05D006634 ORTHO05D008282 4.7e-20 100.9 80 67.5
Medtr4g459450 Medicago truncatula HOM05D006634 ORTHO05D008282 4.7e-20 100.9 80 66.2
arahy.Tifrunner.gnm1.ann1.RYN47D Arachis hypogaea HOM05D006634 ORTHO05D008282 8.0e-20 100.1 80 65.0
BolC4t27285H Brassica oleracea HOM05D006634 ORTHO05D008282 8.0e-20 100.1 81 61.7
SalBow3G1265 Salvia bowleyana HOM05D006634 ORTHO05D008282 8.0e-20 100.1 80 63.8
Hma1.2p1_0058F.1_g032540 Hydrangea macrophylla HOM05D006634 ORTHO05D008282 1.1e-19 99.8 80 66.2
Sed0017465 Sechium edule HOM05D006634 ORTHO05D008282 1.1e-19 99.8 80 60.0
C04p22950 Brassica napus HOM05D006634 ORTHO05D008282 1.8e-19 99.0 81 63.0
BraA04t17721Z Brassica rapa HOM05D006634 ORTHO05D008282 1.8e-19 99.0 81 60.5
Nn2g10789 Nelumbo nucifera HOM05D006634 ORTHO05D008282 2.3e-19 98.6 80 63.8
FAN16G1798 Fragaria x ananassa HOM05D006634 ORTHO05D008282 3.1e-19 98.2 79 62.0
Sabra04G0142400 Salix brachista HOM05D006634 ORTHO05D008282 6.8e-19 97.1 77 63.6
FvH4_3g32290 Fragaria vesca HOM05D006634 ORTHO05D008282 8.9e-19 96.7 80 61.2
FAN11G2087 Fragaria x ananassa HOM05D006634 ORTHO05D008282 8.9e-19 96.7 80 61.2
arahy.Tifrunner.gnm1.ann1.8AEA4E Arachis hypogaea HOM05D006634 ORTHO05D008282 1.5e-18 95.9 85 60.0
unitig_21.g20301 Utricularia gibba HOM05D006634 ORTHO05D008282 1.5e-18 95.9 80 60.0
CDE07G0066 Ceratophyllum demersum HOM05D006634 ORTHO05D008282 2.6e-18 95.1 77 66.2
Rhsim01G0216700 Rhododendron simsii HOM05D006634 ORTHO05D008282 2.6e-18 95.1 80 62.5
Potri.004G210800 Populus trichocarpa HOM05D006634 ORTHO05D008282 5.8e-18 94.0 76 61.8
Sopen11g028130 Solanum pennellii HOM05D006634 ORTHO05D008282 5.8e-18 94.0 80 58.8
BcaB06g28214 Brassica carinata HOM05D006634 ORTHO05D008282 9.8e-18 93.2 80 61.2
Solyc11g069410.2 Solanum lycopersicum HOM05D006634 ORTHO05D008282 9.8e-18 93.2 80 58.8
Cpa.g.sc216.10 Carica papaya HOM05D006634 ORTHO05D008282 1.3e-17 92.8 69 68.1
Actinidia03728 Actinidia chinensis HOM05D006634 ORTHO05D008282 4.9e-17 90.9 78 59.0
AUR62039638 Chenopodium quinoa HOM05D006634 ORTHO05D008282 4.9e-17 90.9 80 60.0
MELO3C020691.2 Cucumis melo HOM05D006634 ORTHO05D008282 4.9e-17 90.9 82 57.3
Aqoxy2G01632 Aquilegia oxysepala HOM05D006634 ORTHO05D008282 6.4e-17 90.5 86 57.0
ClCG03G001830 Citrullus lanatus HOM05D006634 ORTHO05D008282 6.4e-17 90.5 80 57.5
CsaV3_1G033740 Cucumis sativus L. HOM05D006634 ORTHO05D008282 6.4e-17 90.5 82 57.3
AUR62024980 Chenopodium quinoa HOM05D006634 ORTHO05D008282 8.3e-17 90.1 80 60.0
Peaxi162Scf00270g00818 Petunia axillaris HOM05D006634 ORTHO05D008282 1.4e-16 89.4 81 60.5
vmacro14436 Vaccinium macrocarpon HOM05D006634 ORTHO05D008282 3.2e-16 88.2 80 58.8
ECA238G2380 Erigeron canadensis HOM05D006634 ORTHO05D008282 4.1e-16 87.8 80 52.5
Actinidia25419 Actinidia chinensis HOM05D006634 ORTHO05D008282 1.2e-15 86.3 74 58.1
Lalb_Chr03g0027351 Lupinus albus HOM05D006634 ORTHO05D008282 2.0e-15 85.5 75 62.7
Lsat_1_v5_gn_2_98520 Lactuca sativa HOM05D006634 ORTHO05D008282 4.6e-15 84.3 79 57.0
HanXRQChr02g0031651 Helianthus annuus HOM05D006634 ORTHO05D008282 1.0e-14 83.2 80 57.5
HanXRQChr14g0452861 Helianthus annuus HOM05D006634 ORTHO05D008282 3.6e-12 74.7 77 51.9
ECA248G3376 Erigeron canadensis HOM05D006634 ORTHO05D008282 4.7e-12 74.3 80 48.8
QL01p022236 Quercus lobata HOM05D006634 ORTHO05D008282 6.8e-11 70.5 168 33.9
Cc01_g11130 Coffea canephora HOM05D006634 ORTHO05D008282 2.0e-10 68.9 66 50.0
Zm00001eb221580 Zea mays HOM05D006634 ORTHO05D008282 1.1e-08 63.2 80 45.0
Nitab4.5_0014490g0010 Nicotiana tabacum HOM05D006634 ORTHO05D008282 1.9e-08 62.4 42 71.4
SalBow3G3864 Salvia bowleyana HOM05D006634 ORTHO05D008282 4.1e-08 61.2 56 55.4
Sed0015282 Sechium edule HOM05D006634 ORTHO05D008282 1.2e-07 59.7 80 40.0
Zm00001eb045570 Zea mays HOM05D006634 ORTHO05D008282 2.7e-07 58.5 80 42.5
Os10g0481400 Oryza sativa ssp. japonica HOM05D006634 ORTHO05D008282 3.5e-07 58.2 83 41.0
SHI06100 Sapria himalayana HOM05D006634 ORTHO05D008282 1.0e-06 56.6 42 69.0
Haze_23828 Corylus avellana HOM05D006634 ORTHO05D008282 1.7e-06 55.8 45 64.4
Pp3c7_7440 Physcomitrium patens HOM05D006634 ORTHO05D008282 2.3e-06 55.5 87 36.8
A04p21560 Brassica napus HOM05D006634 ORTHO05D008282 3.0e-06 55.1 42 59.5
PGSC0003DMG400008051 Solanum tuberosum HOM05D006634 ORTHO05D008282 5.1e-06 54.3 41 63.4


User provided reference genes

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