Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 1.5e-125 453.0 250 100.0
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 2.3e-102 375.9 250 78.8
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 6.8e-102 374.4 250 78.4
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.5e-101 373.2 250 79.2
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 2.9e-100 369.0 250 72.4
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.1e-99 367.1 249 72.7
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 3.5e-98 362.1 250 72.4
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 1.3e-92 343.6 247 68.0
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 1.7e-92 343.2 254 69.3
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 1.9e-91 339.7 259 74.5
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 2.4e-91 339.3 251 67.3
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 3.2e-91 339.0 250 68.8
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 5.4e-91 338.2 250 66.8
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 1.2e-90 337.0 253 66.4
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 1.2e-90 337.0 253 66.4
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 4.6e-90 335.1 251 64.9
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 1.0e-89 334.0 257 67.3
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 1.7e-89 333.2 250 66.4
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 1.7e-89 333.2 250 68.0
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 5.1e-89 331.6 253 64.8
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 6.6e-89 331.3 273 66.7
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 6.6e-89 331.3 258 64.0
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 2.5e-88 329.3 248 67.3
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 2.5e-88 329.3 250 65.2
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 5.6e-88 328.2 251 63.3
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 7.3e-88 327.8 253 64.0
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 9.6e-88 327.4 252 65.9
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 1.6e-87 326.6 273 65.2
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 2.1e-87 326.2 250 64.8
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.8e-87 325.9 258 62.8
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 3.6e-87 325.5 252 64.7
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 4.7e-87 325.1 250 63.2
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 6.2e-87 324.7 252 65.1
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 1.8e-86 323.2 248 65.7
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 1.8e-86 323.2 250 62.4
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 2.4e-86 322.8 205 78.5
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 2.4e-86 322.8 249 64.7
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 5.2e-86 321.6 245 64.1
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.2e-85 320.5 252 64.7
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 1.5e-85 320.1 248 65.3
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 2.0e-85 319.7 252 63.5
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 2.0e-85 319.7 254 63.4
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.6e-85 319.3 252 64.3
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 3.4e-85 318.9 251 61.8
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 3.4e-85 318.9 245 62.0
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 3.4e-85 318.9 205 76.1
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 4.4e-85 318.5 268 62.7
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 7.6e-85 317.8 252 63.9
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 9.9e-85 317.4 251 64.1
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 9.9e-85 317.4 251 64.1
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 1.3e-84 317.0 256 64.1
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 2.2e-84 316.2 254 69.3
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 2.9e-84 315.8 251 64.5
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 2.9e-84 315.8 252 62.3
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 2.9e-84 315.8 248 64.1
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 3.8e-84 315.5 248 62.9
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 1.1e-83 313.9 288 57.6
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.4e-83 313.5 246 61.0
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 1.4e-83 313.5 248 62.1
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 1.9e-83 313.2 252 59.1
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 3.2e-83 312.4 246 61.4
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 3.2e-83 312.4 251 60.6
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 4.2e-83 312.0 255 63.1
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 5.4e-83 311.6 200 72.5
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 7.1e-83 311.2 251 64.1
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.6e-82 310.1 251 63.3
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 1.6e-82 310.1 251 63.7
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.1e-82 309.7 251 64.1
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.1e-82 309.7 202 72.3
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 2.7e-82 309.3 251 63.7
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 1.0e-81 307.4 249 60.6
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 1.3e-81 307.0 268 59.0
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 1.1e-80 303.9 249 67.5
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 1.5e-80 303.5 250 68.8
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 2.1e-79 299.7 264 60.2
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 1.8e-78 296.6 250 57.6
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 6.9e-78 294.7 251 55.4
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 9.0e-78 294.3 247 59.1
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 1.2e-77 293.9 247 58.7
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 1.5e-77 293.5 247 61.5
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 1.5e-77 293.5 247 58.3
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 1.5e-77 293.5 244 58.6
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 2.6e-77 292.7 180 73.3
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 4.5e-77 292.0 251 55.0
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 7.6e-77 291.2 250 58.4
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 2.2e-76 289.7 244 57.4
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 2.9e-76 289.3 172 79.1
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 4.9e-76 288.5 249 57.8
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 4.9e-76 288.5 250 64.4
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 6.4e-76 288.1 244 57.0
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.1e-75 287.3 269 58.0
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 1.9e-75 286.6 247 57.9
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 9.3e-75 284.3 179 69.3
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 9.3e-75 284.3 253 56.9
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 6.0e-74 281.6 168 78.6
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 3.9e-73 278.9 216 73.1
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 8.7e-73 277.7 168 79.2
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 1.5e-72 276.9 244 56.6
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 5.6e-72 275.0 257 55.3
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 2.8e-71 272.7 345 48.1
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 3.6e-71 272.3 252 53.6
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 2.4e-70 269.6 186 66.1
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 5.5e-67 258.5 226 56.6
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 9.3e-67 257.7 212 60.8
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 2.1e-66 256.5 179 82.7
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 4.6e-66 255.4 181 65.2
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 3.0e-65 252.7 191 62.8
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 3.9e-65 252.3 204 59.8
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 1.5e-64 250.4 187 63.6
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 1.5e-64 250.4 179 65.4
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 1.5e-64 250.4 252 56.3
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 9.0e-62 241.1 193 61.7
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 2.6e-61 239.6 146 78.1
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 1.2e-58 230.7 170 64.7
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 7.9e-58 228.0 248 48.4
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 8.2e-55 218.0 197 58.9
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 6.9e-54 214.9 147 72.1
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 6.9e-54 214.9 161 63.4
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 2.6e-53 213.0 183 55.7
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 2.2e-52 209.9 187 58.8
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 2.2e-52 209.9 181 60.8
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 4.2e-51 205.7 186 57.5
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 2.0e-45 186.8 211 43.6
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 2.9e-44 183.0 155 61.3
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 5.0e-44 182.2 181 50.8
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 4.2e-43 179.1 117 75.2
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 6.1e-42 175.3 195 52.8
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 6.7e-41 171.8 188 51.1
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 6.7e-41 171.8 154 59.1
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 9.7e-40 167.9 155 56.8
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 9.1e-38 161.4 179 53.6
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.1e-35 154.5 152 53.3
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 2.5e-35 153.3 101 74.3
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 1.6e-34 150.6 101 70.3
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 2.2e-31 140.2 129 55.0
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 2.8e-31 139.8 121 56.2
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 8.2e-31 138.3 183 44.3
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 1.7e-28 130.6 113 57.5
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 8.5e-28 128.3 113 55.8
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 5.2e-25 119.0 132 47.7
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 5.2e-25 119.0 132 47.7
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 3.7e-23 112.8 205 33.7
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 2.4e-22 110.2 76 71.1
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 2.7e-21 106.7 67 68.7
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 8.5e-20 101.7 98 56.1
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 1.8e-17 94.0 64 65.6
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 1.8e-17 94.0 98 61.2
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 1.2e-16 91.3 68 61.8
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 1.5e-16 90.9 70 61.4
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 3.4e-16 89.7 121 46.3
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 7.7e-13 78.6 61 60.7
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 5.5e-11 72.4 108 41.7
Cpa.g.sc34.213 Carica papaya HOM05D004791 ORTHO05D005637 2.8e-07 60.1 34 82.4
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 7.0e-06 55.5 38 76.3


User provided reference genes

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