Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 0.0e+00 1528.1 815 100.0
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 0.0e+00 1398.3 819 91.2
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 0.0e+00 1360.9 818 89.0
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 0.0e+00 1358.6 818 89.0
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 0.0e+00 1358.2 819 89.1
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 0.0e+00 1358.2 818 89.0
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 0.0e+00 1199.1 822 78.0
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 0.0e+00 1190.6 822 76.5
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 0.0e+00 1184.1 822 75.7
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 0.0e+00 1182.5 822 77.0
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 0.0e+00 1172.9 858 73.5
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 0.0e+00 1170.6 822 75.2
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 0.0e+00 1163.7 819 75.8
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1155.6 823 74.2
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 0.0e+00 1151.7 823 74.0
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 0.0e+00 1150.6 817 76.0
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 0.0e+00 1149.0 820 74.6
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 0.0e+00 1147.9 821 74.8
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1147.5 823 74.1
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1144.8 830 73.4
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 0.0e+00 1140.2 818 75.3
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1122.8 826 72.3
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 0.0e+00 1118.2 822 72.9
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 0.0e+00 1111.3 786 75.1
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 0.0e+00 1107.8 787 75.1
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 0.0e+00 1099.7 822 71.0
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 0.0e+00 1096.6 818 71.4
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 0.0e+00 1094.3 891 68.4
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 0.0e+00 1092.0 818 71.4
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 0.0e+00 1088.9 817 70.4
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 0.0e+00 1082.8 821 71.4
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 0.0e+00 1082.0 821 70.4
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 0.0e+00 1079.3 822 71.0
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 0.0e+00 1077.0 818 70.2
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 0.0e+00 1076.6 819 69.5
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 0.0e+00 1076.2 819 69.2
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 0.0e+00 1075.8 845 68.8
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 5.6e-312 1074.7 752 75.1
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 3.2e-310 1068.1 816 69.5
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 1.2e-309 1066.2 816 70.0
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 5.2e-308 1060.8 821 69.7
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 8.8e-308 1060.1 818 68.3
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 1.5e-307 1059.3 815 68.8
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 1.7e-306 1055.8 821 69.2
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 8.2e-306 1053.5 816 67.5
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 3.1e-305 1051.6 815 67.4
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 3.1e-305 1051.6 816 68.3
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 3.1e-305 1051.6 825 69.1
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 7.0e-305 1050.4 818 68.8
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 1.6e-304 1049.3 816 67.5
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 5.9e-304 1047.3 817 68.8
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 5.9e-304 1047.3 821 68.5
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 7.7e-304 1047.0 816 67.6
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 7.7e-304 1047.0 819 68.3
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 1.7e-303 1045.8 820 68.7
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 2.9e-303 1045.0 819 68.9
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 2.9e-303 1045.0 843 66.9
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 2.9e-303 1045.0 815 66.9
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 1.1e-302 1043.1 815 67.0
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 1.1e-302 1043.1 816 67.6
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 1.5e-302 1042.7 820 66.8
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 1.9e-302 1042.3 815 66.9
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 2.5e-302 1042.0 818 68.1
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 3.2e-302 1041.6 817 67.3
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 8.0e-301 1036.9 816 67.2
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 1.5e-299 1032.7 823 66.8
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 1.5e-299 1032.7 814 68.2
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 3.3e-299 1031.6 757 72.9
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 9.7e-299 1030.0 830 67.8
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 2.2e-298 1028.9 818 67.0
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 1.4e-297 1026.2 830 66.9
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 5.3e-297 1024.2 831 65.3
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 2.0e-296 1022.3 849 66.3
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 1.6e-293 1012.7 822 66.3
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 3.6e-293 1011.5 858 63.4
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 1.0e-292 1010.0 815 66.6
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 1.5e-291 1006.1 750 70.7
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 2.0e-288 995.7 817 66.6
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 1.3e-287 993.0 817 65.5
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 3.6e-285 984.9 825 65.7
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 6.1e-285 984.2 812 65.5
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 2.2e-282 975.7 918 59.8
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 1.4e-281 973.0 828 64.5
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 1.4e-281 973.0 818 64.5
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 1.2e-280 969.9 818 65.2
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 1.6e-280 969.5 863 62.5
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 2.7e-280 968.8 819 64.2
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 2.4e-265 919.1 816 62.0
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 4.7e-253 878.2 820 61.8
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 1.5e-251 873.2 824 57.5
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 7.6e-251 870.9 827 57.8
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 1.3e-239 833.6 672 66.7
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 7.1e-233 811.2 662 65.6
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 1.6e-232 810.1 818 55.4
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 5.3e-228 795.0 862 51.5
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 7.1e-217 758.1 594 68.7
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 5.3e-180 635.6 628 57.8
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 9.8e-174 614.8 758 46.6
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 1.0e-167 594.7 832 44.0
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 3.0e-167 593.2 779 44.3
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 8.3e-165 585.1 538 59.5
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.2e-147 528.1 377 69.5
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 3.0e-146 523.5 869 39.0
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 1.4e-143 514.6 779 40.2
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 4.0e-143 513.1 827 38.5
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 3.7e-141 506.5 324 78.7
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 1.3e-138 498.0 490 57.1
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 1.9e-137 494.2 394 68.8
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 9.6e-113 412.1 269 75.5
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 1.8e-111 407.9 478 52.3
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 7.9e-107 392.5 255 74.9
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 1.6e-99 368.2 275 64.7
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 9.7e-97 359.0 311 61.7
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 6.5e-77 293.1 243 69.1
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 2.2e-61 241.5 798 26.2
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 1.3e-56 225.7 354 42.7
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 4.1e-47 194.1 213 52.1
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 3.3e-44 184.5 163 57.7
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 1.3e-40 172.6 125 72.8
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 3.7e-40 171.0 841 23.1
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 1.9e-39 168.7 119 73.1
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 3.6e-35 154.5 93 79.6
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 2.1e-30 138.7 220 43.2
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 1.3e-29 136.0 207 41.5
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.7e-29 135.6 101 69.3
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 1.4e-26 125.9 70 85.7
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 1.4e-26 125.9 70 85.7
Actinidia37258 Actinidia chinensis HOM05D005589 ORTHO05D006948 5.8e-25 120.6 70 88.6
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 1.1e-23 116.3 69 79.7
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.6e-19 102.4 123 45.5
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 1.5e-17 95.9 86 59.3
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 1.3e-13 82.8 166 38.0
SEGI_32388 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 1.7e-13 82.4 61 70.5
Thecc.09G330100 Theobroma cacao HOM05D000106 ORTHO05D002214 1.9e-12 79.0 62 72.6
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 5.6e-12 77.4 68 63.2
arahy.Tifrunner.gnm1.ann1.LTYN5B Arachis hypogaea HOM05D005589 ORTHO05D006948 1.8e-10 72.4 77 53.2
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 3.4e-09 68.2 47 72.3
Aa31LG4G15080 Aethionema arabicum HOM05D005589 ORTHO05D006948 3.5e-06 58.2 230 28.7


User provided reference genes

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