Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G329700 Theobroma cacao HOM05D006681 ORTHO05D008338 2.3e-173 612.1 302 100.0
Duzib170G0311 Durio zibethinus HOM05D006681 ORTHO05D008338 5.4e-154 547.7 302 88.7
Gohir.A05G098700 Gossypium hirsutum HOM05D006681 ORTHO05D008338 3.5e-153 545.0 297 89.6
Gorai.009G102400 Gossypium raimondii HOM05D006681 ORTHO05D008338 4.6e-153 544.7 297 89.6
Gohir.D05G098750 Gossypium hirsutum HOM05D006681 ORTHO05D008338 1.7e-152 542.7 297 89.2
COL.COLO4_18427 Corchorus olitorius HOM05D006681 ORTHO05D008338 2.1e-150 535.8 301 86.4
Atru.chr3.3798 Acer truncatum HOM05D006681 ORTHO05D008338 5.0e-131 471.5 297 76.8
QL01p034239 Quercus lobata HOM05D006681 ORTHO05D008338 2.3e-128 462.6 291 75.9
FvH4_3g34680 Fragaria vesca HOM05D006681 ORTHO05D008338 3.9e-128 461.8 297 76.4
FAN11G3596 Fragaria x ananassa HOM05D006681 ORTHO05D008338 5.1e-128 461.5 297 76.4
CSS0007914 Camellia sinensis var. sinensis HOM05D006681 ORTHO05D008338 6.7e-128 461.1 294 75.2
Potri.009G026700 Populus trichocarpa HOM05D006681 ORTHO05D008338 8.7e-128 460.7 289 78.2
FAN16G0358 Fragaria x ananassa HOM05D006681 ORTHO05D008338 1.1e-127 460.3 297 76.1
CSS0025304 Camellia sinensis var. sinensis HOM05D006681 ORTHO05D008338 9.7e-127 457.2 294 74.8
Ciclev10028948m.g Citrus clementina HOM05D006681 ORTHO05D008338 9.7e-127 457.2 289 77.9
Sabra09G0017800 Salix brachista HOM05D006681 ORTHO05D008338 1.3e-126 456.8 289 77.2
RcHm_v2.0_Chr5g0062361 Rosa chinensis HOM05D006681 ORTHO05D008338 1.2e-124 450.3 284 78.5
CiPaw.13G101600 Carya illinoinensis HOM05D006681 ORTHO05D008338 2.6e-124 449.1 302 73.5
MD11G1116600 Malus domestica HOM05D006681 ORTHO05D008338 4.5e-124 448.4 302 72.8
CANSAT54G2145 Cannabis sativa HOM05D006681 ORTHO05D008338 1.3e-123 446.8 288 74.7
GSVIVG01025054001 Vitis vinifera HOM05D006681 ORTHO05D008338 1.3e-123 446.8 289 74.4
Cfa011429 Carpinus fangiana HOM05D006681 ORTHO05D008338 1.7e-123 446.4 302 73.5
Nn2g10531 Nelumbo nucifera HOM05D006681 ORTHO05D008338 2.9e-123 445.7 300 72.0
TWI31G0387 Tripterygium wilfordii HOM05D006681 ORTHO05D008338 1.1e-122 443.7 289 75.1
FAN21G0481 Fragaria x ananassa HOM05D006681 ORTHO05D008338 3.2e-122 442.2 322 69.6
Prupe.6G086900 Prunus persica HOM05D006681 ORTHO05D008338 1.6e-121 439.9 302 71.5
TAR633G1649 Trochodendron aralioides HOM05D006681 ORTHO05D008338 1.6e-121 439.9 282 73.8
arahy.Tifrunner.gnm1.ann1.SK7GFS Arachis hypogaea HOM05D006681 ORTHO05D008338 2.7e-121 439.1 287 72.8
Oeu040277.1 Olea europaea HOM05D006681 ORTHO05D008338 2.7e-121 439.1 286 75.5
arahy.Tifrunner.gnm1.ann1.FZI6FG Arachis hypogaea HOM05D006681 ORTHO05D008338 3.9e-120 435.3 287 72.1
Eucgr.J02098 Eucalyptus grandis HOM05D006681 ORTHO05D008338 1.5e-119 433.3 294 70.7
Aqoxy4G03072 Aquilegia oxysepala HOM05D006681 ORTHO05D008338 2.0e-119 433.0 285 72.6
ECA236G1321 Erigeron canadensis HOM05D006681 ORTHO05D008338 3.3e-119 432.2 288 72.2
Cc01_g12140 Coffea canephora HOM05D006681 ORTHO05D008338 5.7e-119 431.4 286 71.3
Lj3g0002575 Lotus japonicus HOM05D006681 ORTHO05D008338 1.3e-118 430.3 294 71.4
TPR.G3006 Trifolium pratense HOM05D006681 ORTHO05D008338 1.3e-118 430.3 298 71.1
Lalb_Chr03g0026931 Lupinus albus HOM05D006681 ORTHO05D008338 1.7e-118 429.9 300 69.7
Solyc11g072970.2 Solanum lycopersicum HOM05D006681 ORTHO05D008338 2.8e-118 429.1 294 70.4
Lsat_1_v5_gn_8_78740 Lactuca sativa HOM05D006681 ORTHO05D008338 1.1e-117 427.2 289 72.0
Sopen11g030630 Solanum pennellii HOM05D006681 ORTHO05D008338 1.1e-117 427.2 294 69.7
CAN.G1647.1 Capsicum annuum HOM05D006681 ORTHO05D008338 4.1e-117 425.2 282 72.0
Phvul.011G069100 Phaseolus vulgaris HOM05D006681 ORTHO05D008338 4.1e-117 425.2 295 71.2
Sed0010670 Sechium edule HOM05D006681 ORTHO05D008338 4.1e-117 425.2 286 72.0
Duzib168G1095 Durio zibethinus HOM05D006681 ORTHO05D008338 5.3e-117 424.9 302 72.2
PGSC0003DMG400015551 Solanum tuberosum HOM05D006681 ORTHO05D008338 5.3e-117 424.9 294 70.1
Psat7g220640 Pisum sativum HOM05D006681 ORTHO05D008338 9.1e-117 424.1 299 70.6
Medtr4g062130 Medicago truncatula HOM05D006681 ORTHO05D008338 1.2e-116 423.7 299 70.6
PGR119G1802 Punica granatum HOM05D006681 ORTHO05D008338 1.5e-116 423.3 308 68.5
Ca_19209_v3 Cicer arietinum L. HOM05D006681 ORTHO05D008338 2.6e-116 422.5 283 71.7
Rhsim13G0088300 Rhododendron simsii HOM05D006681 ORTHO05D008338 2.6e-116 422.5 287 73.9
HanXRQChr05g0134071 Helianthus annuus HOM05D006681 ORTHO05D008338 3.4e-116 422.2 289 71.3
MSTRG.18607 Avicennia marina HOM05D006681 ORTHO05D008338 1.0e-115 420.6 284 72.2
THA.LOC104814870 Tarenaya hassleriana HOM05D006681 ORTHO05D008338 1.0e-115 420.6 282 71.3
VMungo1127G1059 Vigna mungo HOM05D006681 ORTHO05D008338 1.7e-115 419.9 319 66.5
EL10Ac7g15941 Beta vulgaris HOM05D006681 ORTHO05D008338 2.2e-115 419.5 292 69.5
PSO339G5789 Papaver somniferum HOM05D006681 ORTHO05D008338 6.5e-115 417.9 293 68.6
Migut.D02146 Erythranthe guttata HOM05D006681 ORTHO05D008338 1.1e-114 417.2 289 70.2
Peaxi162Scf00411g00068 Petunia axillaris HOM05D006681 ORTHO05D008338 7.2e-114 414.5 294 68.7
CsaV3_6G022080 Cucumis sativus L. HOM05D006681 ORTHO05D008338 9.4e-114 414.1 286 68.9
DCAR_006014 Daucus carota HOM05D006681 ORTHO05D008338 1.6e-113 413.3 301 67.4
MBI14_g35939_MAGBIO Magnolia biondii HOM05D006681 ORTHO05D008338 1.6e-113 413.3 289 68.9
SalBow3G4078 Salvia bowleyana HOM05D006681 ORTHO05D008338 6.1e-113 411.4 295 68.8
PSO384G0101 Papaver somniferum HOM05D006681 ORTHO05D008338 7.9e-113 411.0 293 67.9
Carub.0005s1203 Capsella rubella HOM05D006681 ORTHO05D008338 2.0e-111 406.4 282 68.1
AT3G46200 Arabidopsis thaliana HOM05D006681 ORTHO05D008338 5.7e-111 404.8 283 68.2
Manes.11G136100 Manihot esculenta HOM05D006681 ORTHO05D008338 9.7e-111 404.1 288 70.5
Thhalv10002615m.g Eutrema salsugineum HOM05D006681 ORTHO05D008338 1.3e-110 403.7 284 69.4
AUR62001852 Chenopodium quinoa HOM05D006681 ORTHO05D008338 2.8e-110 402.5 296 67.9
AL5G24960 Arabidopsis lyrata HOM05D006681 ORTHO05D008338 3.7e-110 402.1 283 67.5
ClCG02G020630 Citrullus lanatus HOM05D006681 ORTHO05D008338 1.4e-109 400.2 338 61.5
Glyma.12G075000 Glycine max HOM05D006681 ORTHO05D008338 4.5e-108 395.2 297 67.0
FAN25G3219 Fragaria x ananassa HOM05D006681 ORTHO05D008338 7.7e-108 394.4 294 68.7
Lj1A175T11 Lonicera japonica HOM05D006681 ORTHO05D008338 1.0e-107 394.0 293 68.6
Sp5g15430 Schrenkiella parvula HOM05D006681 ORTHO05D008338 8.5e-107 391.0 282 67.4
SGA_v2.0_scaffold134G34764 Striga asiatica HOM05D006681 ORTHO05D008338 2.7e-105 386.0 257 72.0
Nitab4.5_0002684g0160 Nicotiana tabacum HOM05D006681 ORTHO05D008338 4.7e-105 385.2 305 63.6
HPP92_006593 Vanilla planifolia HOM05D006681 ORTHO05D008338 1.0e-104 384.0 286 62.6
C03p70520 Brassica napus HOM05D006681 ORTHO05D008338 3.0e-104 382.5 282 64.2
BolC3t19336H Brassica oleracea HOM05D006681 ORTHO05D008338 3.0e-104 382.5 282 64.2
Aa31LG4G15300 Aethionema arabicum HOM05D006681 ORTHO05D008338 8.8e-104 380.9 360 55.3
BcaC01g01926 Brassica carinata HOM05D006681 ORTHO05D008338 8.8e-104 380.9 282 63.5
Os05g0117500 Oryza sativa ssp. japonica HOM05D006681 ORTHO05D008338 3.3e-103 379.0 286 64.3
vmacro03125 Vaccinium macrocarpon HOM05D006681 ORTHO05D008338 4.4e-103 378.6 287 68.3
BraA06t25188Z Brassica rapa HOM05D006681 ORTHO05D008338 5.7e-103 378.3 282 64.2
A06p21000 Brassica napus HOM05D006681 ORTHO05D008338 1.7e-102 376.7 282 64.2
Carub.0003s2829 Capsella rubella HOM05D006681 ORTHO05D008338 2.2e-102 376.3 282 63.5
Zm00001eb266060 Zea mays HOM05D006681 ORTHO05D008338 3.8e-99 365.5 288 61.8
Dinv32860 Davidia involucrata HOM05D006681 ORTHO05D008338 4.2e-98 362.1 225 77.3
Thhalv10002633m.g Eutrema salsugineum HOM05D006681 ORTHO05D008338 1.2e-95 354.0 284 63.4
Ah.08g214980 Amaranthus hybridus HOM05D006681 ORTHO05D008338 7.0e-93 344.7 298 58.7
AUR62009646 Chenopodium quinoa HOM05D006681 ORTHO05D008338 1.2e-92 344.0 294 59.9
Lj3g0011020 Lotus japonicus HOM05D006681 ORTHO05D008338 5.5e-90 335.1 224 71.9
Cpa.g.sc2126.1 Carica papaya HOM05D006681 ORTHO05D008338 1.6e-89 333.6 209 76.1
Nitab4.5_0002684g0190 Nicotiana tabacum HOM05D006681 ORTHO05D008338 3.4e-87 325.9 270 62.2
Pp3c11_23040 Physcomitrium patens HOM05D006681 ORTHO05D008338 1.4e-85 320.5 284 56.0
Nitab4.5_0001953g0020 Nicotiana tabacum HOM05D006681 ORTHO05D008338 1.6e-84 317.0 277 58.5
Mapoly0128s0008 Marchantia polymorpha HOM05D006681 ORTHO05D008338 1.3e-83 313.9 281 56.6
Haze_24007 Corylus avellana HOM05D006681 ORTHO05D008338 2.9e-83 312.8 440 45.2
SMO367G0798 Selaginella moellendorffii HOM05D006681 ORTHO05D008338 1.9e-82 310.1 279 56.3
AagrBONN_evm.TU.Sc2ySwM_228.1772 Anthoceros agrestis HOM05D006681 ORTHO05D008338 1.4e-80 303.9 281 53.4
MELO3C013668.2 Cucumis melo HOM05D006681 ORTHO05D008338 6.8e-80 301.6 272 59.2
Sc06g0008190 Simmondsia chinensis HOM05D006681 ORTHO05D008338 3.7e-70 269.2 181 70.7
Nitab4.5_0001953g0050 Nicotiana tabacum HOM05D006681 ORTHO05D008338 2.7e-68 263.1 293 50.2
Hund05017 Selenicereus undatus HOM05D006681 ORTHO05D008338 1.3e-67 260.8 289 49.1
AL1G56400 Arabidopsis lyrata HOM05D006681 ORTHO05D008338 4.0e-64 249.2 186 63.4
CBR_g415 Chara braunii HOM05D006681 ORTHO05D008338 1.5e-63 247.3 344 41.6
SEGI_27570 Sequoiadendron giganteum HOM05D006681 ORTHO05D008338 4.7e-57 225.7 203 57.1
ATR0759G055 Amborella trichopoda HOM05D006681 ORTHO05D008338 2.2e-54 216.9 178 59.6
Pp3c11_23047 Physcomitrium patens HOM05D006681 ORTHO05D008338 1.9e-53 213.8 173 59.5
Nitab4.5_0000766g0030 Nicotiana tabacum HOM05D006681 ORTHO05D008338 3.8e-38 162.9 143 59.4
Glyma.11G145018 Glycine max HOM05D006681 ORTHO05D008338 6.4e-38 162.2 119 65.5
Sc06g0008200 Simmondsia chinensis HOM05D006681 ORTHO05D008338 3.5e-36 156.4 114 64.0
CAN.G1289.2 Capsicum annuum HOM05D006681 ORTHO05D008338 2.2e-30 137.1 209 40.7
PRCOL_00001211 Prasinoderma coloniale HOM05D006681 ORTHO05D008338 4.9e-30 136.0 441 25.2
MCO11G760 Micromonas commoda HOM05D006681 ORTHO05D008338 2.8e-25 120.2 264 29.5
MD03G1102800 Malus domestica HOM05D006681 ORTHO05D008338 4.2e-21 106.3 76 67.1
Actinidia20468 Actinidia chinensis HOM05D006681 ORTHO05D008338 3.5e-20 103.2 76 68.4
CDE08G1356 Ceratophyllum demersum HOM05D006681 ORTHO05D008338 3.4e-15 86.7 69 56.5
Nitab4.5_0001068g0110 Nicotiana tabacum HOM05D006681 ORTHO05D008338 8.4e-14 82.0 70 62.9


User provided reference genes

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