Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G325000 Theobroma cacao HOM05D004273 ORTHO05D005041 4.7e-277 957.2 473 100.0
COL.COLO4_18478 Corchorus olitorius HOM05D004273 ORTHO05D005041 2.8e-213 745.3 473 79.3
Gohir.A03G040200 Gossypium hirsutum HOM05D004273 ORTHO05D005041 3.1e-204 715.3 474 77.6
Gorai.003G134500 Gossypium raimondii HOM05D004273 ORTHO05D005041 1.3e-202 709.9 474 77.4
Duzib168G0407 Durio zibethinus HOM05D004273 ORTHO05D005041 1.7e-202 709.5 480 76.2
Gohir.D03G127800 Gossypium hirsutum HOM05D004273 ORTHO05D005041 5.4e-201 704.5 474 76.8
Duzib170G0539 Durio zibethinus HOM05D004273 ORTHO05D005041 1.5e-198 696.4 450 79.8
Atru.chr3.3842_Atru.chr3.3843 Acer truncatum HOM05D004273 ORTHO05D005041 3.0e-167 592.4 468 64.5
Cpa.g.sc190.7 Carica papaya HOM05D004273 ORTHO05D005041 5.3e-164 581.6 465 62.8
Dinv32873 Davidia involucrata HOM05D004273 ORTHO05D005041 7.7e-163 577.8 468 62.0
TAR633G2082 Trochodendron aralioides HOM05D004273 ORTHO05D005041 2.9e-162 575.9 468 61.1
Cfa011474 Carpinus fangiana HOM05D004273 ORTHO05D005041 7.2e-161 571.2 445 62.9
Dinv01561 Davidia involucrata HOM05D004273 ORTHO05D005041 3.0e-159 565.8 472 61.0
TAR636G0691 Trochodendron aralioides HOM05D004273 ORTHO05D005041 2.6e-158 562.8 461 60.5
QL01p032775 Quercus lobata HOM05D004273 ORTHO05D005041 1.3e-157 560.5 466 60.5
CiPaw.13G097100 Carya illinoinensis HOM05D004273 ORTHO05D005041 2.8e-157 559.3 465 61.1
TWI31G0117 Tripterygium wilfordii HOM05D004273 ORTHO05D005041 5.3e-156 555.1 460 60.7
TWI79G1222 Tripterygium wilfordii HOM05D004273 ORTHO05D005041 1.3e-154 550.4 460 59.8
Potri.001G237400 Populus trichocarpa HOM05D004273 ORTHO05D005041 9.4e-153 544.3 467 58.9
Hma1.2p1_0624F.1_g191440 Hydrangea macrophylla HOM05D004273 ORTHO05D005041 2.1e-152 543.1 467 58.7
Potri.009G028700 Populus trichocarpa HOM05D004273 ORTHO05D005041 2.1e-152 543.1 463 60.3
Prupe.6G080900 Prunus persica HOM05D004273 ORTHO05D005041 5.2e-151 538.5 434 62.4
ClCG02G020320 Citrullus lanatus HOM05D004273 ORTHO05D005041 1.5e-150 537.0 461 57.5
Lj1A156G61 Lonicera japonica HOM05D004273 ORTHO05D005041 2.0e-150 536.6 481 57.2
PGR102G1220 Punica granatum HOM05D004273 ORTHO05D005041 6.3e-149 531.6 470 58.1
THA.LOC104799449 Tarenaya hassleriana HOM05D004273 ORTHO05D005041 3.1e-148 529.3 464 56.5
Lj3g0025927 Lotus japonicus HOM05D004273 ORTHO05D005041 4.1e-148 528.9 461 56.6
Sabra09G0019900 Salix brachista HOM05D004273 ORTHO05D005041 1.6e-147 526.9 464 58.6
Sabra16G0143100 Salix brachista HOM05D004273 ORTHO05D005041 2.7e-147 526.2 465 57.6
Sopen06g032400 Solanum pennellii HOM05D004273 ORTHO05D005041 3.5e-147 525.8 457 57.5
CAN.G394.46 Capsicum annuum HOM05D004273 ORTHO05D005041 5.9e-147 525.0 456 57.5
Ca_19181_v3 Cicer arietinum L. HOM05D004273 ORTHO05D005041 5.9e-147 525.0 463 56.8
PGSC0003DMG400030404 Solanum tuberosum HOM05D004273 ORTHO05D005041 1.0e-146 524.2 457 57.8
Sed0008303 Sechium edule HOM05D004273 ORTHO05D005041 1.7e-146 523.5 465 56.1
Medtr4g063605 Medicago truncatula HOM05D004273 ORTHO05D005041 2.9e-146 522.7 467 56.5
Peaxi162Scf00679g00214 Petunia axillaris HOM05D004273 ORTHO05D005041 3.8e-146 522.3 461 58.1
Sp5g15230 Schrenkiella parvula HOM05D004273 ORTHO05D005041 3.8e-146 522.3 468 57.3
AL5G25280 Arabidopsis lyrata HOM05D004273 ORTHO05D005041 1.1e-145 520.8 468 56.8
GSVIVG01025001001 Vitis vinifera HOM05D004273 ORTHO05D005041 1.1e-145 520.8 417 63.3
CARHR155380 Cardamine hirsuta HOM05D004273 ORTHO05D005041 1.5e-145 520.4 472 56.1
RcHm_v2.0_Chr5g0063781 Rosa chinensis HOM05D004273 ORTHO05D005041 1.9e-145 520.0 445 57.8
CSS0043051 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 2.5e-145 519.6 468 57.3
Haze_24060 Corylus avellana HOM05D004273 ORTHO05D005041 2.5e-145 519.6 493 55.0
Solyc06g075980.3 Solanum lycopersicum HOM05D004273 ORTHO05D005041 1.6e-144 516.9 449 57.5
Glyma.11G141100 Glycine max HOM05D004273 ORTHO05D005041 4.7e-144 515.4 463 55.7
AT3G46450 Arabidopsis thaliana HOM05D004273 ORTHO05D005041 1.0e-143 514.2 468 56.0
BcaB02g10723 Brassica carinata HOM05D004273 ORTHO05D005041 3.0e-143 512.7 469 57.6
CsaV3_6G017020 Cucumis sativus L. HOM05D004273 ORTHO05D005041 4.0e-143 512.3 461 55.3
Thhalv10002507m.g Eutrema salsugineum HOM05D004273 ORTHO05D005041 4.0e-143 512.3 468 56.8
Manes.04G033100 Manihot esculenta HOM05D004273 ORTHO05D005041 6.8e-143 511.5 430 59.5
TPR.G10209 Trifolium pratense HOM05D004273 ORTHO05D005041 8.8e-143 511.1 463 55.7
Carub.0005s1225 Capsella rubella HOM05D004273 ORTHO05D005041 3.4e-142 509.2 468 56.2
FvH4_3g35600 Fragaria vesca HOM05D004273 ORTHO05D005041 3.4e-142 509.2 434 56.5
Phvul.011G065600 Phaseolus vulgaris HOM05D004273 ORTHO05D005041 3.4e-142 509.2 463 56.4
BraA06t25640Z Brassica rapa HOM05D004273 ORTHO05D005041 4.4e-142 508.8 468 57.1
BcaC01g02262 Brassica carinata HOM05D004273 ORTHO05D005041 9.8e-142 507.7 467 56.1
BolC3t19006H Brassica oleracea HOM05D004273 ORTHO05D005041 1.3e-141 507.3 468 56.2
Ciclev10028607m.g Citrus clementina HOM05D004273 ORTHO05D005041 1.3e-141 507.3 397 63.5
A06p27020 Brassica napus HOM05D004273 ORTHO05D005041 1.7e-141 506.9 468 57.3
FAN21G1625 Fragaria x ananassa HOM05D004273 ORTHO05D005041 1.7e-141 506.9 434 56.7
Lalb_Chr03g0026761 Lupinus albus HOM05D004273 ORTHO05D005041 1.7e-141 506.9 466 57.3
CSS0029075 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 2.8e-141 506.1 470 55.7
VMungo1127G1030 Vigna mungo HOM05D004273 ORTHO05D005041 4.8e-141 505.4 466 55.2
MD03G1096600 Malus domestica HOM05D004273 ORTHO05D005041 6.3e-141 505.0 453 56.7
C03p67250 Brassica napus HOM05D004273 ORTHO05D005041 8.3e-141 504.6 467 55.9
Aa31LG4G15500 Aethionema arabicum HOM05D004273 ORTHO05D005041 1.2e-139 500.7 470 56.0
MELO3C013689.2 Cucumis melo HOM05D004273 ORTHO05D005041 2.0e-139 500.0 471 54.1
FAN11G1845 Fragaria x ananassa HOM05D004273 ORTHO05D005041 3.5e-139 499.2 442 55.0
FAN16G0116 Fragaria x ananassa HOM05D004273 ORTHO05D005041 1.3e-138 497.3 440 55.5
MD11G1142800 Malus domestica HOM05D004273 ORTHO05D005041 2.3e-138 496.5 435 57.7
arahy.Tifrunner.gnm1.ann1.0ME452 Arachis hypogaea HOM05D004273 ORTHO05D005041 2.9e-138 496.1 474 53.2
arahy.Tifrunner.gnm1.ann1.44D9RB Arachis hypogaea HOM05D004273 ORTHO05D005041 6.5e-138 495.0 474 53.2
PSO339G3737 Papaver somniferum HOM05D004273 ORTHO05D005041 6.5e-138 495.0 458 55.5
Actinidia07045 Actinidia chinensis HOM05D004273 ORTHO05D005041 8.6e-138 494.6 454 56.4
MSTRG.1791 Avicennia marina HOM05D004273 ORTHO05D005041 4.2e-137 492.3 467 54.8
Eucgr.B02383 Eucalyptus grandis HOM05D004273 ORTHO05D005041 7.2e-137 491.5 471 54.4
Rhsim13G0085100 Rhododendron simsii HOM05D004273 ORTHO05D005041 2.1e-136 490.0 439 56.7
PSO384G1393 Papaver somniferum HOM05D004273 ORTHO05D005041 6.1e-136 488.4 460 55.2
Oeu017093.1 Olea europaea HOM05D004273 ORTHO05D005041 2.3e-135 486.5 434 56.7
Lalb_Chr19g0137751 Lupinus albus HOM05D004273 ORTHO05D005041 1.5e-134 483.8 461 55.5
Psat7g217720 Pisum sativum HOM05D004273 ORTHO05D005041 1.5e-134 483.8 461 52.9
Aqoxy4G02965 Aquilegia oxysepala HOM05D004273 ORTHO05D005041 2.6e-134 483.0 464 53.0
Glyma.15G039800 Glycine max HOM05D004273 ORTHO05D005041 2.6e-134 483.0 471 55.6
VMungo1080G0602 Vigna mungo HOM05D004273 ORTHO05D005041 8.3e-133 478.0 478 52.7
arahy.Tifrunner.gnm1.ann1.T00HES Arachis hypogaea HOM05D004273 ORTHO05D005041 3.1e-132 476.1 468 52.8
arahy.Tifrunner.gnm1.ann1.N7EFUM Arachis hypogaea HOM05D004273 ORTHO05D005041 5.4e-132 475.3 462 53.2
Migut.E01325 Erythranthe guttata HOM05D004273 ORTHO05D005041 2.0e-131 473.4 465 54.0
MBI05_g06541_MAGBIO Magnolia biondii HOM05D004273 ORTHO05D005041 2.7e-131 473.0 467 51.2
HanXRQChr02g0044491 Helianthus annuus HOM05D004273 ORTHO05D005041 3.5e-131 472.6 448 55.4
Lalb_Chr24g0394211 Lupinus albus HOM05D004273 ORTHO05D005041 4.5e-131 472.2 455 54.1
DCAR_005310 Daucus carota HOM05D004273 ORTHO05D005041 7.8e-131 471.5 455 52.3
EL10Ac7g15984 Beta vulgaris HOM05D004273 ORTHO05D005041 1.0e-130 471.1 451 54.1
Phvul.L004243 Phaseolus vulgaris HOM05D004273 ORTHO05D005041 2.3e-130 469.9 480 53.8
Dinv31442 Davidia involucrata HOM05D004273 ORTHO05D005041 2.9e-130 469.5 455 52.7
SGA_v2.0_scaffold111G31385 Striga asiatica HOM05D004273 ORTHO05D005041 1.9e-129 466.8 473 51.6
ECA236G0424 Erigeron canadensis HOM05D004273 ORTHO05D005041 4.7e-128 462.2 472 50.8
SalBow8G5260 Salvia bowleyana HOM05D004273 ORTHO05D005041 1.8e-127 460.3 463 52.3
Lsat_1_v5_gn_8_77981 Lactuca sativa HOM05D000739 ORTHO05D005041 3.0e-127 459.5 477 53.0
AUR62009603 Chenopodium quinoa HOM05D004273 ORTHO05D005041 2.6e-126 456.4 455 52.3
Glyma.13G334700 Glycine max HOM05D004273 ORTHO05D005041 3.2e-124 449.5 475 52.8
Hund04983 Selenicereus undatus HOM05D004273 ORTHO05D005041 4.1e-124 449.1 456 51.8
AUR62001817 Chenopodium quinoa HOM05D004273 ORTHO05D005041 6.0e-123 445.3 455 51.0
Nn2g10411 Nelumbo nucifera HOM05D004273 ORTHO05D005041 1.7e-122 443.7 383 59.8
Hma1.2p1_0533F.1_g173530 Hydrangea macrophylla HOM05D004273 ORTHO05D005041 1.2e-120 437.6 452 51.3
Nitab4.5_0001838g0010 Nicotiana tabacum HOM05D004273 ORTHO05D005041 1.2e-120 437.6 444 50.7
CDE04G0924 Ceratophyllum demersum HOM05D004273 ORTHO05D005041 4.7e-120 435.6 453 48.8
Zm00001eb062630 Zea mays HOM05D004273 ORTHO05D005041 1.8e-119 433.7 475 48.6
Cc01_g12600 Coffea canephora HOM05D004273 ORTHO05D005041 2.0e-118 430.3 438 51.8
CSS0019329 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 4.9e-117 425.6 452 48.5
Os03g0820900 Oryza sativa ssp. japonica HOM05D004273 ORTHO05D005041 3.2e-116 422.9 475 49.1
ATR0559G270 Amborella trichopoda HOM05D004273 ORTHO05D005041 2.5e-113 413.3 473 47.1
Nitab4.5_0001304g0060 Nicotiana tabacum HOM05D004273 ORTHO05D005041 1.8e-111 407.1 321 60.1
Actinidia02958 Actinidia chinensis HOM05D004273 ORTHO05D005041 9.9e-110 401.4 429 48.7
Sc06g0008260 Simmondsia chinensis HOM05D004273 ORTHO05D005041 3.5e-107 392.9 334 57.5
Sc06g0002640 Simmondsia chinensis HOM05D004273 ORTHO05D005041 1.0e-106 391.3 382 51.0
CAN.G1013.9 Capsicum annuum HOM05D004273 ORTHO05D005041 1.7e-106 390.6 484 42.4
PGSC0003DMG400023525 Solanum tuberosum HOM05D004273 ORTHO05D005041 1.5e-105 387.5 488 42.0
Solyc05g054570.3 Solanum lycopersicum HOM05D004273 ORTHO05D005041 1.9e-105 387.1 480 41.9
Sopen05g033050 Solanum pennellii HOM05D004273 ORTHO05D005041 1.9e-105 387.1 480 41.9
Ah.16g107130 Amaranthus hybridus HOM05D004273 ORTHO05D005041 1.6e-104 384.0 455 44.6
EL10Ac2g03411 Beta vulgaris HOM05D004273 ORTHO05D005041 5.2e-103 379.0 455 45.3
Peaxi162Scf00015g00152 Petunia axillaris HOM05D004273 ORTHO05D005041 6.8e-103 378.6 496 42.3
Nitab4.5_0014877g0010 Nicotiana tabacum HOM05D004273 ORTHO05D005041 8.9e-103 378.3 496 41.7
Nitab4.5_0001831g0040 Nicotiana tabacum HOM05D004273 ORTHO05D005041 1.2e-102 377.9 496 41.7
SEGI_06894 Sequoiadendron giganteum HOM05D004273 ORTHO05D005041 2.6e-102 376.7 471 44.4
AUR62038361 Chenopodium quinoa HOM05D004273 ORTHO05D005041 5.8e-102 375.6 382 50.8
HanXRQChr14g0458231 Helianthus annuus HOM05D004273 ORTHO05D005041 9.9e-102 374.8 460 46.1
ECA238G2787 Erigeron canadensis HOM05D004273 ORTHO05D005041 1.2e-99 367.9 475 43.6
Cc02_g08070 Coffea canephora HOM05D004273 ORTHO05D005041 7.8e-99 365.2 377 47.5
HPP92_019085 Vanilla planifolia HOM05D004273 ORTHO05D005041 7.8e-99 365.2 437 44.4
HanXRQChr07g0201161 Helianthus annuus HOM05D004273 ORTHO05D005041 9.0e-95 351.7 354 51.7
Lsat_1_v5_gn_2_116561 Lactuca sativa HOM05D004273 ORTHO05D005041 3.4e-94 349.7 382 47.6
unitig_747.g21363 Utricularia gibba HOM05D004273 ORTHO05D005041 9.9e-94 348.2 435 43.2
Zm00001eb211720 Zea mays HOM05D004273 ORTHO05D005041 1.3e-90 337.8 371 46.9
AUR62040968 Chenopodium quinoa HOM05D004273 ORTHO05D005041 1.5e-86 324.3 346 49.1
Lj1A935G50 Lonicera japonica HOM05D004273 ORTHO05D005041 2.7e-83 313.5 482 39.2
SMO266G0022 Selaginella moellendorffii HOM05D004273 ORTHO05D005041 1.3e-77 294.7 431 38.5
Ah.08g219160 Amaranthus hybridus HOM05D004273 ORTHO05D005041 3.4e-70 270.0 259 53.7
AagrBONN_evm.TU.Sc2ySwM_117.239 Anthoceros agrestis HOM05D004273 ORTHO05D005041 3.4e-70 270.0 373 41.6
vmacro03093 Vaccinium macrocarpon HOM05D004273 ORTHO05D005041 3.4e-70 270.0 264 56.4
Hund12542 Selenicereus undatus HOM05D004273 ORTHO05D005041 2.9e-69 266.9 316 44.3
Mapoly0153s0026 Marchantia polymorpha HOM05D004273 ORTHO05D005041 4.2e-68 263.1 329 43.8
Pp3c9_11070 Physcomitrium patens HOM05D004273 ORTHO05D005041 1.1e-63 248.4 446 35.4
Pp3c14_19130 Physcomitrium patens HOM05D004273 ORTHO05D005041 5.0e-61 239.6 494 30.8
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 2.2e-48 197.6 218 45.0
CBR_g4074 Chara braunii HOM05D004273 ORTHO05D005041 1.0e-45 188.7 360 32.2
Actinidia07731 Actinidia chinensis HOM05D004273 ORTHO05D005041 1.6e-43 181.4 151 56.3
FAN11G3764 Fragaria x ananassa HOM05D004273 ORTHO05D005041 6.7e-42 176.0 368 32.6
Ah.08g219150 Amaranthus hybridus HOM05D004273 ORTHO05D005041 7.2e-36 156.0 198 41.4
DCAR_027649 Daucus carota HOM05D004273 ORTHO05D005041 9.4e-36 155.6 484 27.3
Actinidia07724 Actinidia chinensis HOM05D004273 ORTHO05D005041 4.4e-33 146.7 162 45.7
FvH4_3g35570 Fragaria vesca HOM05D004273 ORTHO05D005041 2.2e-32 144.4 329 30.1
Lj8C85T7 Lonicera japonica HOM05D004273 ORTHO05D005041 2.3e-26 124.4 111 54.1
unitig_748.g7756 Utricularia gibba HOM05D004273 ORTHO05D005041 3.5e-22 110.5 177 38.4
vmacro03094 Vaccinium macrocarpon HOM05D004273 ORTHO05D005041 3.5e-22 110.5 85 60.0
TPR.G17285 Trifolium pratense HOM05D004273 ORTHO05D005041 5.7e-17 93.2 143 39.2
Mapoly0091s0075 Marchantia polymorpha HOM05D004273 ORTHO05D031172 1.2e-11 75.5 188 27.1
Zm00001eb292580 Zea mays HOM05D004273 ORTHO05D005041 9.8e-09 65.9 41 75.6
Gohir.A13G159900 Gossypium hirsutum HOM05D001180 ORTHO05D001055 6.4e-08 63.2 212 25.5
Gorai.013G197600 Gossypium raimondii HOM05D001180 ORTHO05D001055 6.4e-08 63.2 212 25.5
TPR.G31687 Trifolium pratense HOM05D001180 ORTHO05D001055 6.4e-08 63.2 208 24.0
CiPaw.09G052900 Carya illinoinensis HOM05D001180 ORTHO05D001055 1.4e-07 62.0 185 27.6
Sed0009390 Sechium edule HOM05D001180 ORTHO05D001055 1.4e-07 62.0 262 23.7
Ca_26521_v3 Cicer arietinum L. HOM05D001180 ORTHO05D001055 1.9e-07 61.6 209 23.9
Duzib106G1904 Durio zibethinus HOM05D001180 ORTHO05D001055 3.2e-07 60.8 217 25.3
Potri.007G025900 Populus trichocarpa HOM05D001180 ORTHO05D001055 3.2e-07 60.8 218 24.3
Cc04_g05800 Coffea canephora HOM05D001471 ORTHO05D001325 5.4e-07 60.1 240 25.4
arahy.Tifrunner.gnm1.ann1.C6R2SB Arachis hypogaea HOM05D000092 ORTHO05D000042 7.0e-07 59.7 306 22.2
Ciclev10032042m.g Citrus clementina HOM05D001180 ORTHO05D001055 1.2e-06 58.9 233 23.2
HPP92_003105 Vanilla planifolia HOM05D000394 ORTHO05D000299 1.2e-06 58.9 157 29.3
HPP92_019826 Vanilla planifolia HOM05D000050 ORTHO05D005041 1.2e-06 58.9 46 60.9
TAR376G1211 Trochodendron aralioides HOM05D001180 ORTHO05D001055 2.0e-06 58.2 275 22.5
Potri.007G025800 Populus trichocarpa HOM05D001180 ORTHO05D001055 4.6e-06 57.0 257 22.6
MELO3C007825.2 Cucumis melo HOM05D001180 ORTHO05D001055 6.0e-06 56.6 257 22.6
CsaV3_6G046220 Cucumis sativus L. HOM05D001180 ORTHO05D001055 6.0e-06 56.6 252 23.8
Potri.002G093400 Populus trichocarpa HOM05D001180 ORTHO05D001055 6.0e-06 56.6 181 22.7
PGR042G0420 Punica granatum HOM05D001180 ORTHO05D001055 7.8e-06 56.2 159 26.4
TAR625G1445 Trochodendron aralioides HOM05D001180 ORTHO05D001055 7.8e-06 56.2 243 22.6


User provided reference genes

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