Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G323800 Theobroma cacao HOM05D007025 ORTHO05D008862 6.3e-41 170.2 81 100.0
Sed0024062 Sechium edule HOM05D007025 ORTHO05D008862 3.0e-35 151.4 81 84.0
Duzib168G1407 Durio zibethinus HOM05D007025 ORTHO05D008862 8.8e-35 149.8 81 86.4
Gohir.A03G041000 Gossypium hirsutum HOM05D007025 ORTHO05D008862 8.8e-35 149.8 81 85.2
CSS0049041 Camellia sinensis var. sinensis HOM05D007025 ORTHO05D008862 1.2e-34 149.4 81 85.2
Gohir.D03G127100 Gossypium hirsutum HOM05D007025 ORTHO05D008862 1.5e-34 149.1 81 85.2
Gorai.003G133500 Gossypium raimondii HOM05D007025 ORTHO05D008862 1.5e-34 149.1 81 85.2
ClCG08G009640 Citrullus lanatus HOM05D007025 ORTHO05D008862 2.0e-34 148.7 81 81.5
PGR102G0249 Punica granatum HOM05D007025 ORTHO05D008862 2.6e-34 148.3 81 84.0
TAR374G1462 Trochodendron aralioides HOM05D007025 ORTHO05D008862 2.6e-34 148.3 81 81.5
GSVIVG01024988001 Vitis vinifera HOM05D007025 ORTHO05D008862 1.3e-33 146.0 81 81.5
Ciclev10003169m.g Citrus clementina HOM05D007025 ORTHO05D008862 2.8e-33 144.8 81 81.5
Eucgr.J02059 Eucalyptus grandis HOM05D007025 ORTHO05D008862 3.7e-33 144.4 81 82.7
MELO3C026555.2 Cucumis melo HOM05D007025 ORTHO05D008862 4.9e-33 144.1 81 80.2
vmacro00530 Vaccinium macrocarpon HOM05D007025 ORTHO05D008862 6.3e-33 143.7 81 80.2
CsaV3_6G031770 Cucumis sativus L. HOM05D007025 ORTHO05D008862 2.4e-32 141.7 81 76.5
COL.COLO4_20470 Corchorus olitorius HOM05D007025 ORTHO05D008862 3.1e-32 141.4 81 80.2
Hma1.2p1_1888F.1_g306550 Hydrangea macrophylla HOM05D007025 ORTHO05D008862 3.1e-32 141.4 81 79.0
Cpa.g.sc840.2 Carica papaya HOM05D007025 ORTHO05D008862 9.2e-32 139.8 81 79.0
TWI79G0521 Tripterygium wilfordii HOM05D007025 ORTHO05D008862 1.6e-31 139.0 81 75.3
Rhsim09G0044100 Rhododendron simsii HOM05D007025 ORTHO05D008862 2.0e-31 138.7 81 76.5
Manes.04G033800 Manihot esculenta HOM05D007025 ORTHO05D008862 5.9e-31 137.1 81 76.5
CAN.G764.4 Capsicum annuum HOM05D007025 ORTHO05D008862 7.8e-31 136.7 81 77.8
CiPaw.09G091100 Carya illinoinensis HOM05D007025 ORTHO05D008862 1.3e-30 136.0 81 76.5
Nn5g26960 Nelumbo nucifera HOM05D007025 ORTHO05D008862 1.7e-30 135.6 82 76.8
Peaxi162Scf00406g00059 Petunia axillaris HOM05D007025 ORTHO05D008862 1.7e-30 135.6 81 75.3
Solyc11g066070.2 Solanum lycopersicum HOM05D007025 ORTHO05D008862 1.7e-30 135.6 81 76.5
Sopen11g025810 Solanum pennellii HOM05D007025 ORTHO05D008862 1.7e-30 135.6 81 76.5
PGSC0003DMG400000442 Solanum tuberosum HOM05D007025 ORTHO05D008862 1.7e-30 135.6 81 76.5
Nitab4.5_0004078g0030 Nicotiana tabacum HOM05D007025 ORTHO05D008862 2.9e-30 134.8 81 75.3
Aqoxy1G00724 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 3.8e-30 134.4 81 74.1
Nitab4.5_0001800g0060 Nicotiana tabacum HOM05D007025 ORTHO05D008862 3.8e-30 134.4 81 75.3
unitig_749.g14331 Utricularia gibba HOM05D007025 ORTHO05D008862 3.8e-30 134.4 81 74.1
CiPaw.13G095900 Carya illinoinensis HOM05D007025 ORTHO05D008862 6.6e-30 133.7 81 75.3
Prupe.6G079900 Prunus persica HOM05D007025 ORTHO05D008862 6.6e-30 133.7 81 74.1
EL10Ac7g15997 Beta vulgaris HOM05D007025 ORTHO05D008862 1.1e-29 132.9 81 76.5
QL06p002232 Quercus lobata HOM05D007025 ORTHO05D008862 1.5e-29 132.5 80 73.8
QL10p005425 Quercus lobata HOM05D007025 ORTHO05D008862 1.9e-29 132.1 80 73.8
CiPaw.14G069900 Carya illinoinensis HOM05D007025 ORTHO05D008862 4.3e-29 131.0 81 72.8
Solyc06g076010.3 Solanum lycopersicum HOM05D007025 ORTHO05D008862 5.6e-29 130.6 81 74.1
Sopen06g032420 Solanum pennellii HOM05D007025 ORTHO05D008862 5.6e-29 130.6 81 74.1
CANSAT54G1063 Cannabis sativa HOM05D007025 ORTHO05D008862 7.3e-29 130.2 81 74.1
Hund04979 Selenicereus undatus HOM05D007025 ORTHO05D008862 7.3e-29 130.2 81 72.8
arahy.Tifrunner.gnm1.ann1.XVFR0N Arachis hypogaea HOM05D007025 ORTHO05D008862 1.2e-28 129.4 81 71.6
ATR0800G159 Amborella trichopoda HOM05D007025 ORTHO05D008862 1.6e-28 129.0 79 74.7
Aqoxy7G01971 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 1.6e-28 129.0 81 70.4
SGA_v2.0_scaffold118G32439 Striga asiatica HOM05D007025 ORTHO05D008862 1.6e-28 129.0 82 75.6
Cfa003375 Carpinus fangiana HOM05D007025 ORTHO05D008862 2.8e-28 128.3 81 74.1
Haze_24077 Corylus avellana HOM05D007025 ORTHO05D008862 3.6e-28 127.9 80 73.8
arahy.Tifrunner.gnm1.ann1.UND1EB Arachis hypogaea HOM05D007025 ORTHO05D008862 4.7e-28 127.5 81 70.4
Lsat_1_v5_gn_2_83821 Lactuca sativa HOM05D007025 ORTHO05D008862 4.7e-28 127.5 81 70.4
FvH4_3g35770 Fragaria vesca HOM05D007025 ORTHO05D008862 6.1e-28 127.1 81 74.1
FAN11G3513 Fragaria x ananassa HOM05D007025 ORTHO05D008862 6.1e-28 127.1 81 74.1
FAN16G3493 Fragaria x ananassa HOM05D007025 ORTHO05D008862 6.1e-28 127.1 81 74.1
FAN25G2181 Fragaria x ananassa HOM05D007025 ORTHO05D008862 6.1e-28 127.1 81 74.1
PSO384G2653 Papaver somniferum HOM05D007025 ORTHO05D008862 6.1e-28 127.1 81 70.4
Migut.C01196 Erythranthe guttata HOM05D007025 ORTHO05D008862 8.0e-28 126.7 81 75.3
Lsat_1_v5_gn_5_79400 Lactuca sativa HOM05D007025 ORTHO05D008862 1.0e-27 126.3 81 69.1
RcHm_v2.0_Chr5g0006711 Rosa chinensis HOM05D007025 ORTHO05D008862 1.0e-27 126.3 81 74.1
RcHm_v2.0_Chr5g0063941 Rosa chinensis HOM05D007025 ORTHO05D008862 1.0e-27 126.3 81 74.1
THA.LOC104810785 Tarenaya hassleriana HOM05D007025 ORTHO05D008862 1.0e-27 126.3 81 69.1
Cc01_g12710 Coffea canephora HOM05D007025 ORTHO05D008862 1.4e-27 125.9 81 71.6
FAN21G1635 Fragaria x ananassa HOM05D007025 ORTHO05D008862 4.0e-27 124.4 81 72.8
AL1G53430 Arabidopsis lyrata HOM05D007025 ORTHO05D008862 6.8e-27 123.6 81 69.1
AT1G47278 Arabidopsis thaliana HOM05D007025 ORTHO05D008862 6.8e-27 123.6 81 69.1
Aa31sc152G30 Aethionema arabicum HOM05D007025 ORTHO05D008862 1.5e-26 122.5 81 70.4
ECA238G2407 Erigeron canadensis HOM05D007025 ORTHO05D008862 2.0e-26 122.1 81 67.9
Carub.0001s3607 Capsella rubella HOM05D007025 ORTHO05D008862 4.4e-26 120.9 81 66.7
CARHR036850 Cardamine hirsuta HOM05D007025 ORTHO05D008862 4.4e-26 120.9 82 69.5
Atru.chr3.3859 Acer truncatum HOM05D007025 ORTHO05D008862 7.5e-26 120.2 81 66.7
Glyma.05G134100 Glycine max HOM05D007025 ORTHO05D008862 9.8e-26 119.8 81 66.7
Glyma.08G088800 Glycine max HOM05D007025 ORTHO05D008862 1.3e-25 119.4 81 66.7
Phvul.002G188200 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 4.9e-25 117.5 81 65.4
Sp1g34420 Schrenkiella parvula HOM05D007025 ORTHO05D008862 6.4e-25 117.1 81 66.7
Lj1g0011371 Lotus japonicus HOM05D007025 ORTHO05D008862 8.3e-25 116.7 81 65.4
Lj4g0013158 Lotus japonicus HOM05D007025 ORTHO05D008862 8.3e-25 116.7 81 65.4
BcaB04g17532 Brassica carinata HOM05D007025 ORTHO05D008862 1.1e-24 116.3 81 65.4
Thhalv10011908m.g Eutrema salsugineum HOM05D007025 ORTHO05D008862 1.4e-24 115.9 81 65.4
BcaC07g37223 Brassica carinata HOM05D007025 ORTHO05D008862 2.4e-24 115.2 81 64.2
A08p05760 Brassica napus HOM05D007025 ORTHO05D008862 2.4e-24 115.2 81 64.2
C08p06430 Brassica napus HOM05D007025 ORTHO05D008862 2.4e-24 115.2 81 64.2
BraA08t32579Z Brassica rapa HOM05D007025 ORTHO05D008862 2.4e-24 115.2 81 64.2
Lalb_Chr12g0209151 Lupinus albus HOM05D007025 ORTHO05D008862 3.2e-24 114.8 81 64.2
CDE11G0504 Ceratophyllum demersum HOM05D007025 ORTHO05D008862 4.1e-24 114.4 81 65.4
Os03g0276700 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 4.1e-24 114.4 79 68.4
Phvul.007G101100 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 7.0e-24 113.6 81 64.2
Lalb_Chr12g0209181 Lupinus albus HOM05D007025 ORTHO05D008862 9.2e-24 113.2 81 63.0
Os08g0422300 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 1.2e-23 112.8 79 68.4
SHI05954 Sapria himalayana HOM05D007025 ORTHO05D008862 1.6e-23 112.5 78 61.5
Medtr4g094750 Medicago truncatula HOM05D007025 ORTHO05D008862 3.5e-23 111.3 81 59.3
Psat7g087480 Pisum sativum HOM05D007025 ORTHO05D008862 3.5e-23 111.3 81 59.3
TPR.G23830 Trifolium pratense HOM05D007025 ORTHO05D008862 5.0e-22 107.5 79 59.5
SalBow5G5439 Salvia bowleyana HOM05D007025 ORTHO05D008862 1.5e-21 105.9 76 63.2
Lj1A680T12 Lonicera japonica HOM05D007025 ORTHO05D008862 5.6e-21 104.0 59 79.7
MBI05_g06554_MAGBIO Magnolia biondii HOM05D007025 ORTHO05D008862 8.0e-20 100.1 72 59.7
Potri.009G029400 Populus trichocarpa HOM05D007025 ORTHO05D008862 8.9e-19 96.7 81 54.3
unitig_26.g9279 Utricularia gibba HOM05D007025 ORTHO05D008862 8.9e-19 96.7 61 70.5
PGSC0003DMG400030317 Solanum tuberosum HOM05D007025 ORTHO05D008862 1.3e-17 92.8 57 70.2
MD11G1111500 Malus domestica HOM05D007025 ORTHO05D008862 1.4e-16 89.4 59 71.2
FAN24G0628 Fragaria x ananassa HOM05D007025 ORTHO05D008862 4.1e-16 87.8 63 66.7
MD02G1271300 Malus domestica HOM05D007025 ORTHO05D008862 5.4e-16 87.4 59 69.5
HanXRQChr14g0439311 Helianthus annuus HOM05D007025 ORTHO05D008862 1.6e-15 85.9 57 66.7
BolC8t47490H Brassica oleracea HOM05D007025 ORTHO05D008862 2.7e-15 85.1 70 54.3
AUR62001808 Chenopodium quinoa HOM05D002150 ORTHO05D002191 1.1e-13 79.7 44 79.5
AUR62009594 Chenopodium quinoa HOM05D007025 ORTHO05D002191 1.1e-13 79.7 44 79.5
COL.COLO4_18491 Corchorus olitorius HOM05D007025 ORTHO05D008862 5.6e-13 77.4 77 57.1
Mapoly0032s0020 Marchantia polymorpha HOM05D007025 ORTHO05D008862 9.5e-13 76.6 80 45.0
SGA_v2.0_scaffold24G10508 Striga asiatica HOM05D007025 ORTHO05D008862 4.7e-12 74.3 43 76.7
AagrBONN_evm.TU.Sc2ySwM_344.5329 Anthoceros agrestis HOM05D007025 ORTHO05D008862 1.2e-10 69.7 77 44.2
Pp3c21_6850 Physcomitrium patens HOM05D007025 ORTHO05D008862 3.4e-10 68.2 80 41.2
SEGI_34612 Sequoiadendron giganteum HOM05D007025 ORTHO05D008862 3.4e-10 68.2 45 57.8
MD02G1271100 Malus domestica HOM05D007025 ORTHO05D008862 1.4e-08 62.8 45 62.2
FvH4_2g11050 Fragaria vesca HOM05D007025 ORTHO05D008862 4.1e-08 61.2 42 61.9


User provided reference genes

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