Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 4.8e-143 511.1 258 100.0
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 2.5e-123 445.7 249 89.6
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 1.3e-111 406.8 292 74.0
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 4.6e-109 398.3 288 72.9
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 2.3e-108 396.0 288 72.2
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 1.1e-107 393.7 288 72.2
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 9.2e-94 347.4 301 63.5
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 6.0e-93 344.7 293 63.1
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 7.8e-93 344.4 293 63.1
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 2.3e-92 342.8 293 62.8
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 1.6e-90 336.7 294 62.2
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 1.8e-89 333.2 295 62.4
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 4.0e-89 332.0 293 63.1
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 4.9e-87 325.1 294 60.5
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 1.1e-86 323.9 296 59.8
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 3.2e-86 322.4 239 71.5
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 1.6e-85 320.1 291 58.1
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 2.3e-84 316.2 290 59.7
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 2.3e-84 316.2 289 59.2
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 3.0e-84 315.8 297 58.9
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 5.1e-84 315.1 296 59.1
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 8.6e-84 314.3 290 59.3
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 1.1e-83 313.9 296 58.4
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 1.6e-82 310.1 300 58.0
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 3.6e-82 308.9 289 59.5
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 6.2e-82 308.1 288 59.0
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 1.8e-81 306.6 290 57.6
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 6.8e-81 304.7 289 58.1
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 1.2e-80 303.9 314 54.8
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 2.0e-80 303.1 332 51.5
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 4.4e-80 302.0 294 58.2
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 7.6e-80 301.2 289 57.4
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 9.9e-80 300.8 294 55.4
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 9.9e-80 300.8 289 57.4
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.3e-79 300.4 327 53.2
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 4.9e-79 298.5 232 68.5
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 4.9e-79 298.5 289 57.1
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 6.4e-79 298.1 299 55.9
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 6.4e-79 298.1 288 56.9
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 8.4e-79 297.7 292 54.8
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 1.1e-78 297.4 283 59.4
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 1.4e-78 297.0 293 56.7
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 1.9e-78 296.6 289 56.7
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 5.4e-78 295.0 293 55.3
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 5.4e-78 295.0 300 55.3
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 7.1e-78 294.7 293 54.3
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 1.6e-77 293.5 296 55.4
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 1.6e-77 293.5 298 55.7
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 1.6e-77 293.5 296 57.1
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 2.1e-77 293.1 245 64.9
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 2.7e-77 292.7 240 66.7
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 6.0e-77 291.6 294 53.4
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 7.8e-77 291.2 255 60.8
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 1.0e-76 290.8 272 57.0
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 2.3e-76 289.7 252 59.5
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 5.1e-76 288.5 318 51.9
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 5.1e-76 288.5 279 55.6
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 1.5e-75 287.0 220 66.4
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 1.9e-75 286.6 299 55.2
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 4.3e-75 285.4 337 50.4
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 4.3e-75 285.4 297 53.2
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 5.6e-75 285.0 299 54.8
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 7.3e-75 284.6 289 55.7
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 9.6e-75 284.3 300 55.0
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 9.6e-75 284.3 300 55.0
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 9.6e-75 284.3 300 55.0
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 1.3e-74 283.9 295 54.2
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 1.3e-74 283.9 293 54.9
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 2.8e-74 282.7 232 65.1
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 1.1e-73 280.8 298 53.4
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.4e-73 280.4 179 75.4
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 5.3e-73 278.5 295 53.6
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 6.9e-73 278.1 252 58.7
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 9.0e-73 277.7 258 57.8
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 9.0e-73 277.7 264 57.2
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 9.0e-73 277.7 270 54.4
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 2.0e-72 276.6 294 56.1
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 2.0e-72 276.6 298 53.0
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 2.6e-72 276.2 296 54.1
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 3.4e-72 275.8 308 51.9
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 4.4e-72 275.4 258 58.1
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 4.4e-72 275.4 354 48.3
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 4.4e-72 275.4 259 58.7
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 5.8e-72 275.0 253 56.5
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 9.9e-72 274.2 234 59.4
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 1.3e-71 273.9 238 60.5
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 1.7e-71 273.5 258 57.4
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 2.4e-70 269.6 195 67.2
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 7.1e-70 268.1 288 51.7
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 2.7e-69 266.2 288 51.4
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 4.6e-69 265.4 269 55.4
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 1.7e-68 263.5 337 47.5
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 3.6e-66 255.8 205 69.8
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 6.2e-66 255.0 296 51.0
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 2.4e-65 253.1 208 64.4
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 2.4e-65 253.1 288 51.0
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 2.6e-64 249.6 233 55.4
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 3.4e-64 249.2 311 48.6
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 1.7e-63 246.9 233 58.8
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 1.7e-63 246.9 233 58.8
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 1.7e-63 246.9 233 58.8
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 2.7e-61 239.6 238 54.2
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 6.0e-61 238.4 300 48.7
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 6.7e-60 235.0 232 53.4
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 2.4e-57 226.5 301 45.8
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 3.2e-54 216.1 418 37.6
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 6.0e-53 211.8 251 48.2
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 3.7e-50 202.6 214 50.9
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 1.2e-48 197.6 244 45.9
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 4.2e-46 189.1 229 45.9
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 2.1e-45 186.8 233 44.6
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 6.1e-45 185.3 191 55.0
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 2.2e-42 176.8 130 69.2
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 2.0e-40 170.2 225 41.8
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 1.1e-35 154.5 100 74.0
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 9.7e-35 151.4 174 50.6
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 1.8e-33 147.1 79 86.1
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 2.0e-32 143.7 161 50.3
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 2.6e-32 143.3 75 84.0
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 7.7e-32 141.7 75 82.7
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 2.8e-26 123.2 167 44.3
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 4.8e-26 122.5 82 72.0
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 1.1e-25 121.3 67 85.1
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 1.4e-25 120.9 75 77.3
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 1.4e-25 120.9 75 77.3
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 1.8e-25 120.6 190 38.9
COL.COLO4_35627 Corchorus olitorius HOM05D005444 ORTHO05D001950 3.8e-23 112.8 105 62.9
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 3.6e-21 106.3 154 42.2
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 6.7e-20 102.1 75 65.3
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 2.8e-18 96.7 117 43.6
TAR636G2897 Trochodendron aralioides HOM05D005444 ORTHO05D006773 1.8e-17 94.0 80 62.5
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 1.6e-16 90.9 152 37.5
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 7.7e-16 88.6 42 92.9
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 2.2e-15 87.0 60 70.0
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 2.2e-15 87.0 72 62.5
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 8.5e-15 85.1 44 84.1
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 2.7e-13 80.1 42 85.7
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 4.0e-12 76.3 79 46.8
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 9.8e-11 71.6 39 82.1
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.8e-10 70.1 189 29.1
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 3.7e-10 69.7 98 40.8
Nn2g13370 Nelumbo nucifera HOM05D005444 ORTHO05D006773 6.3e-10 68.9 89 44.9
Glyma.11G138967 Glycine max HOM05D005444 ORTHO05D006773 1.1e-09 68.2 73 50.7
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 7.2e-06 55.5 165 29.1
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 7.2e-06 55.5 151 32.5


User provided reference genes

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