Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G319900 Theobroma cacao HOM05D004332 ORTHO05D005116 1.2e-68 263.1 130 100.0
Gohir.A05G094800 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.8e-66 255.8 130 95.4
Gohir.D05G095080 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.8e-66 255.8 130 95.4
COL.COLO4_18528 Corchorus olitorius HOM05D004332 ORTHO05D005116 3.1e-66 255.0 130 95.4
Gohir.D05G095200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 5.3e-66 254.2 130 94.6
Gohir.D03G124100 Gossypium hirsutum HOM05D004332 ORTHO05D005116 3.5e-65 251.5 130 93.8
Gorai.009G098500 Gossypium raimondii HOM05D004332 ORTHO05D005116 4.5e-65 251.1 130 94.6
Duzib168G2052 Durio zibethinus HOM05D004332 ORTHO05D005116 7.7e-65 250.4 130 93.1
Gorai.003G130800 Gossypium raimondii HOM05D004332 ORTHO05D005116 1.3e-64 249.6 131 93.9
Gohir.A03G043200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 6.5e-64 247.3 130 91.5
Duzib150G0187 Durio zibethinus HOM05D004332 ORTHO05D005116 4.2e-63 244.6 130 93.8
Gohir.D07G103500 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.8e-61 239.2 129 93.0
Gohir.A07G099000 Gossypium hirsutum HOM05D004332 ORTHO05D005116 5.7e-60 234.2 130 90.8
Manes.01G172400 Manihot esculenta HOM05D004332 ORTHO05D005116 2.4e-58 228.8 130 85.4
CiPaw.13G092600 Carya illinoinensis HOM05D004332 ORTHO05D005116 9.1e-58 226.9 130 85.4
CSS0035025 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 1.2e-57 226.5 131 86.3
Dinv04179 Davidia involucrata HOM05D004332 ORTHO05D005116 1.2e-57 226.5 131 85.5
Dinv17021 Davidia involucrata HOM05D004332 ORTHO05D005116 1.2e-57 226.5 131 85.5
Dinv42969 Davidia involucrata HOM05D004332 ORTHO05D005116 1.2e-57 226.5 131 85.5
Dinv43130 Davidia involucrata HOM05D004332 ORTHO05D005116 1.2e-57 226.5 131 85.5
Rhsim01G0229500 Rhododendron simsii HOM05D004332 ORTHO05D005116 1.2e-57 226.5 130 84.6
GSVIVG01024938001 Vitis vinifera HOM05D004332 ORTHO05D005116 1.2e-57 226.5 130 84.6
CiPaw.14G067900 Carya illinoinensis HOM05D004332 ORTHO05D005116 1.6e-57 226.1 130 85.4
TWI31G0816 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 2.7e-57 225.3 130 84.6
Actinidia34413 Actinidia chinensis HOM05D004332 ORTHO05D005116 3.5e-57 224.9 131 86.3
MD03G1090100 Malus domestica HOM05D004332 ORTHO05D005116 3.5e-57 224.9 132 82.6
Prupe.6G074300 Prunus persica HOM05D004332 ORTHO05D005116 3.5e-57 224.9 133 82.7
CsaV3_6G016760 Cucumis sativus L. HOM05D004332 ORTHO05D005116 4.5e-57 224.6 130 80.8
MELO3C025906.2 Cucumis melo HOM05D004332 ORTHO05D005116 5.9e-57 224.2 130 80.8
Gorai.001G111400 Gossypium raimondii HOM05D004332 ORTHO05D005116 7.7e-57 223.8 122 91.8
Manes.02G131400 Manihot esculenta HOM05D004332 ORTHO05D005116 1.3e-56 223.0 130 83.8
Eucgr.J02045 Eucalyptus grandis HOM05D004332 ORTHO05D005116 2.3e-56 222.2 133 84.2
MD11G1099700 Malus domestica HOM05D004332 ORTHO05D005116 2.9e-56 221.9 134 81.3
QL01p031517 Quercus lobata HOM05D004332 ORTHO05D005116 2.9e-56 221.9 129 82.9
CANSAT54G0234 Cannabis sativa HOM05D004332 ORTHO05D005116 6.6e-56 220.7 130 81.5
Cc01_g13020 Coffea canephora HOM05D004332 ORTHO05D005116 8.6e-56 220.3 130 82.3
Hma1.2p1_0615F.1_g189860 Hydrangea macrophylla HOM05D004332 ORTHO05D005116 8.6e-56 220.3 130 84.6
Actinidia37195 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.1e-55 219.9 130 83.1
Sed0013921 Sechium edule HOM05D004332 ORTHO05D005116 1.1e-55 219.9 130 79.2
CSS0027892 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 1.5e-55 219.5 133 82.7
Lsat_1_v5_gn_9_23661 Lactuca sativa HOM05D004332 ORTHO05D005116 1.5e-55 219.5 130 82.3
TWI75G0441 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 1.5e-55 219.5 130 83.8
Carub.0008s2008 Capsella rubella HOM05D004332 ORTHO05D005116 1.9e-55 219.2 132 81.8
TAR633G2148 Trochodendron aralioides HOM05D004332 ORTHO05D005116 2.5e-55 218.8 130 83.1
Potri.009G032100 Populus trichocarpa HOM05D004332 ORTHO05D005116 3.3e-55 218.4 134 82.1
ClCG02G020050 Citrullus lanatus HOM05D004332 ORTHO05D005116 4.2e-55 218.0 129 79.1
Ciclev10029562m.g Citrus clementina HOM05D004332 ORTHO05D005116 7.2e-55 217.2 134 81.3
AL8G35880 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 9.5e-55 216.9 130 80.0
MBI05_g28381_MAGBIO Magnolia biondii HOM05D004332 ORTHO05D005116 1.2e-54 216.5 130 81.5
Thhalv10015001m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 1.6e-54 216.1 132 81.1
Rhsim13G0081500 Rhododendron simsii HOM05D004332 ORTHO05D005116 2.8e-54 215.3 130 81.5
Oeu017398.1 Olea europaea HOM05D004332 ORTHO05D005116 3.6e-54 214.9 132 78.8
AT5G59410 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 6.1e-54 214.2 131 80.2
FvH4_3g36490 Fragaria vesca HOM05D004332 ORTHO05D005116 6.1e-54 214.2 131 82.4
FAN11G3576 Fragaria x ananassa HOM05D004332 ORTHO05D005116 6.1e-54 214.2 131 82.4
Glyma.11G138900 Glycine max HOM05D004332 ORTHO05D005116 6.1e-54 214.2 130 80.8
Migut.N00901 Erythranthe guttata HOM05D004332 ORTHO05D005116 8.0e-54 213.8 131 78.6
FAN25G2250 Fragaria x ananassa HOM05D004332 ORTHO05D005116 8.0e-54 213.8 131 82.4
SGA_v2.0_scaffold132G34538 Striga asiatica HOM05D004332 ORTHO05D005116 8.0e-54 213.8 131 78.6
unitig_6.g29275 Utricularia gibba HOM05D004332 ORTHO05D005116 1.0e-53 213.4 130 77.7
unitig_747.g21434 Utricularia gibba HOM05D004332 ORTHO05D005116 1.0e-53 213.4 130 77.7
FAN16G1081 Fragaria x ananassa HOM05D004332 ORTHO05D005116 1.8e-53 212.6 131 82.4
HanXRQChr08g0237001 Helianthus annuus HOM05D004332 ORTHO05D005116 2.3e-53 212.2 130 80.0
CARHR285780 Cardamine hirsuta HOM05D004332 ORTHO05D005116 3.0e-53 211.8 132 78.8
Sp6g21090 Schrenkiella parvula HOM05D004332 ORTHO05D005116 4.0e-53 211.5 130 79.2
arahy.Tifrunner.gnm1.ann1.KAW7XL Arachis hypogaea HOM05D004332 ORTHO05D005116 5.2e-53 211.1 130 79.2
Glyma.12G062500 Glycine max HOM05D004332 ORTHO05D005116 5.2e-53 211.1 130 78.5
Lalb_Chr03g0026581 Lupinus albus HOM05D004332 ORTHO05D005116 6.8e-53 210.7 130 76.9
THA.LOC104814879 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 1.5e-52 209.5 130 77.7
Oeu002423.1 Olea europaea HOM05D004332 ORTHO05D005116 2.0e-52 209.1 131 75.6
RcHm_v2.0_Chr5g0065351 Rosa chinensis HOM05D004332 ORTHO05D005116 2.0e-52 209.1 132 78.0
SalBow2G0012 Salvia bowleyana HOM05D004332 ORTHO05D005116 2.0e-52 209.1 134 74.6
Nn2g11136 Nelumbo nucifera HOM05D004332 ORTHO05D005116 2.6e-52 208.8 130 79.2
Thhalv10017410m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 3.4e-52 208.4 133 75.9
ATR0559G209 Amborella trichopoda HOM05D004332 ORTHO05D005116 9.8e-52 206.8 130 79.2
VMungo1127G1024 Vigna mungo HOM05D004332 ORTHO05D005116 9.8e-52 206.8 130 77.7
ClCG03G001410 Citrullus lanatus HOM05D004332 ORTHO05D005116 1.7e-51 206.1 130 76.9
Hund04945 Selenicereus undatus HOM05D004332 ORTHO05D005116 1.7e-51 206.1 123 78.9
AL146U10030 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 2.2e-51 205.7 133 77.4
Phvul.011G063600 Phaseolus vulgaris HOM05D004332 ORTHO05D005116 2.2e-51 205.7 131 78.6
CARHR122250 Cardamine hirsuta HOM05D004332 ORTHO05D005116 2.8e-51 205.3 133 76.7
vmacro14542 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 2.8e-51 205.3 118 83.9
Sed0019241 Sechium edule HOM05D004332 ORTHO05D005116 4.9e-51 204.5 130 76.2
Medtr2g097270 Medicago truncatula HOM05D004332 ORTHO05D005116 6.3e-51 204.1 130 77.7
TPR.G34281 Trifolium pratense HOM05D004332 ORTHO05D005116 6.3e-51 204.1 130 76.9
Aa31sc23G410 Aethionema arabicum HOM05D004332 ORTHO05D005116 8.3e-51 203.8 132 75.8
Lalb_Chr19g0137881 Lupinus albus HOM05D004332 ORTHO05D005116 8.3e-51 203.8 130 74.6
Nitab4.5_0000463g0140 Nicotiana tabacum HOM05D004332 ORTHO05D005116 8.3e-51 203.8 130 75.4
AT2G29020 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 1.1e-50 203.4 134 74.6
ECA247G3838 Erigeron canadensis HOM05D004332 ORTHO05D005116 1.1e-50 203.4 127 78.7
Nitab4.5_0001326g0120 Nicotiana tabacum HOM05D004332 ORTHO05D005116 1.1e-50 203.4 130 75.4
Potri.001G241500 Populus trichocarpa HOM05D004332 ORTHO05D005116 1.1e-50 203.4 133 77.4
PGR102G2585 Punica granatum HOM05D004332 ORTHO05D005116 1.1e-50 203.4 132 78.0
Sabra16G0146000 Salix brachista HOM05D004332 ORTHO05D005116 1.1e-50 203.4 145 73.8
Sc21g0005870 Simmondsia chinensis HOM05D004332 ORTHO05D005116 1.1e-50 203.4 130 79.2
BcaB06g28270 Brassica carinata HOM05D004332 ORTHO05D005116 1.4e-50 203.0 133 73.7
BcaC02g08120 Brassica carinata HOM05D004332 ORTHO05D005116 1.4e-50 203.0 133 74.4
A04p21990 Brassica napus HOM05D004332 ORTHO05D005116 1.4e-50 203.0 133 74.4
C04p58150 Brassica napus HOM05D004332 ORTHO05D005116 1.4e-50 203.0 133 74.4
BolC4t27343H Brassica oleracea HOM05D004332 ORTHO05D005116 1.8e-50 202.6 133 74.4
BraA04t17767Z Brassica rapa HOM05D004332 ORTHO05D005116 1.8e-50 202.6 133 73.7
AUR62009559 Chenopodium quinoa HOM05D004332 ORTHO05D005116 1.8e-50 202.6 130 73.1
Sp4g11830 Schrenkiella parvula HOM05D004332 ORTHO05D005116 1.8e-50 202.6 133 74.4
Aa31LG5G7210 Aethionema arabicum HOM05D004332 ORTHO05D005116 2.4e-50 202.2 133 74.4
Lj3g0024178 Lotus japonicus HOM05D004332 ORTHO05D005116 2.4e-50 202.2 130 75.4
THA.LOC104810775 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 3.1e-50 201.8 130 76.9
Sc12g0001450 Simmondsia chinensis HOM05D004332 ORTHO05D005116 4.1e-50 201.4 130 76.9
MELO3C020622.2 Cucumis melo HOM05D004332 ORTHO05D005116 5.4e-50 201.1 130 73.8
Carub.0004s1001 Capsella rubella HOM05D004332 ORTHO05D005116 9.2e-50 200.3 133 75.2
Oeu064111.2 Olea europaea HOM05D004332 ORTHO05D005116 9.2e-50 200.3 130 71.5
Sed0025770 Sechium edule HOM05D004332 ORTHO05D005116 9.2e-50 200.3 130 73.8
Ah.08g219640 Amaranthus hybridus HOM05D004332 ORTHO05D005116 1.2e-49 199.9 123 75.6
EL10Ac7g16034 Beta vulgaris HOM05D004332 ORTHO05D005116 1.2e-49 199.9 130 74.6
Psat5g286720 Pisum sativum HOM05D004332 ORTHO05D005116 1.2e-49 199.9 118 81.4
CsaV3_1G034360 Cucumis sativus L. HOM05D004332 ORTHO05D005116 1.6e-49 199.5 130 74.6
THA.LOC104826319 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 1.6e-49 199.5 133 75.2
BcaB02g10224 Brassica carinata HOM05D004332 ORTHO05D005116 2.0e-49 199.1 134 73.9
A07p19440 Brassica napus HOM05D004332 ORTHO05D005116 2.7e-49 198.7 134 73.1
BcaC02g11036 Brassica carinata HOM05D004332 ORTHO05D005116 3.5e-49 198.4 134 73.1
C04p21940 Brassica napus HOM05D004332 ORTHO05D005116 3.5e-49 198.4 134 73.1
BolC4t23714H Brassica oleracea HOM05D004332 ORTHO05D005116 3.5e-49 198.4 134 73.1
BraA07t29650Z Brassica rapa HOM05D004332 ORTHO05D005116 4.5e-49 198.0 134 72.4
THA.LOC104800671 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 5.9e-49 197.6 132 72.7
PGSC0003DMG400030417 Solanum tuberosum HOM05D004332 ORTHO05D005116 7.8e-49 197.2 130 72.3
AUR62001771 Chenopodium quinoa HOM05D004332 ORTHO05D005116 1.3e-48 196.4 130 70.8
Sabra09G0022800 Salix brachista HOM05D004332 ORTHO05D005116 2.9e-48 195.3 125 78.4
DCAR_018915 Daucus carota HOM05D004332 ORTHO05D005116 3.9e-48 194.9 120 75.0
SEGI_11468 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 6.6e-48 194.1 130 70.0
TAR636G3330 Trochodendron aralioides HOM05D004332 ORTHO05D005116 6.6e-48 194.1 119 80.7
PSO339G1935 Papaver somniferum HOM05D004332 ORTHO05D005116 1.1e-47 193.4 126 74.6
PSO151G0214 Papaver somniferum HOM05D004332 ORTHO05D005116 1.5e-47 193.0 126 74.6
Solyc06g076260.3 Solanum lycopersicum HOM05D004332 ORTHO05D005116 1.9e-47 192.6 130 69.2
Atru.chr3.3947 Acer truncatum HOM05D004332 ORTHO05D005116 5.6e-47 191.0 138 72.5
Aqoxy1G00923 Aquilegia oxysepala HOM05D004332 ORTHO05D005116 5.6e-47 191.0 128 72.7
CAN.G394.64 Capsicum annuum HOM05D004332 ORTHO05D005116 1.2e-46 189.9 120 75.0
arahy.Tifrunner.gnm1.ann1.WMUR0J Arachis hypogaea HOM05D004332 ORTHO05D005116 2.1e-46 189.1 117 77.8
CDE04G0625 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 1.4e-45 186.4 118 72.9
CDE07G0755 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 1.5e-44 183.0 130 65.4
arahy.Tifrunner.gnm1.ann1.TT4C38 Arachis hypogaea HOM05D004332 ORTHO05D005116 2.6e-44 182.2 127 71.7
Lsat_1_v5_gn_8_73521 Lactuca sativa HOM05D004332 ORTHO05D005116 5.8e-44 181.0 122 72.1
arahy.Tifrunner.gnm1.ann1.A22IES Arachis hypogaea HOM05D004332 ORTHO05D005116 9.8e-44 180.3 122 72.1
HanXRQChr07g0197291 Helianthus annuus HOM05D004332 ORTHO05D005116 9.2e-42 173.7 139 64.7
Mapoly0045s0062 Marchantia polymorpha HOM05D004332 ORTHO05D005116 2.7e-41 172.2 118 66.9
Os05g0110600 Oryza sativa ssp. japonica HOM05D004332 ORTHO05D005116 3.5e-41 171.8 130 65.4
Zm00001eb266910 Zea mays HOM05D004332 ORTHO05D005116 3.9e-40 168.3 131 64.9
SMO304G0081 Selaginella moellendorffii HOM05D004332 ORTHO05D005116 8.0e-38 160.6 129 57.4
Nn2g13368 Nelumbo nucifera HOM05D004332 ORTHO05D005116 8.9e-37 157.1 91 81.3
Pp3c16_16760 Physcomitrium patens HOM05D004332 ORTHO05D005116 1.2e-36 156.8 115 65.2
AagrBONN_evm.TU.Sc2ySwM_228.3328 Anthoceros agrestis HOM05D004332 ORTHO05D005116 1.4e-34 149.8 131 59.5
Pp3c6_17300 Physcomitrium patens HOM05D004332 ORTHO05D005116 1.9e-31 139.4 119 52.9
Haze_24115 Corylus avellana HOM05D004332 ORTHO05D005116 1.8e-29 132.9 77 80.5
Sopen06g032690 Solanum pennellii HOM05D004332 ORTHO05D005116 4.4e-28 128.3 78 76.9
Actinidia07026 Actinidia chinensis HOM05D004332 ORTHO05D005116 3.7e-27 125.2 85 77.6
vmacro03061 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 1.2e-25 120.2 79 72.2
TAR369G0503 Trochodendron aralioides HOM05D004332 ORTHO05D005116 3.9e-24 115.2 75 73.3
AL4G23580 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 8.6e-24 114.0 77 72.7
FAN21G1178 Fragaria x ananassa HOM05D004332 ORTHO05D005116 1.1e-23 113.6 75 76.0
SEGI_12680 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 1.6e-22 109.8 76 64.5
Peaxi162Scf00774g00129 Petunia axillaris HOM05D004332 ORTHO05D005116 2.2e-19 99.4 56 83.9
Actinidia23932 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.1e-18 97.1 60 85.0
SHI47893 Sapria himalayana HOM05D004332 ORTHO05D005116 5.3e-13 78.2 50 72.0
HPP92_028206 Vanilla planifolia HOM05D004332 ORTHO05D005116 4.4e-12 75.1 62 59.7
Cre08.g376000 Chlamydomonas reinhardtii HOM05D004332 ORTHO05D005116 1.1e-10 70.5 96 39.6
Eucgr.H02119 Eucalyptus grandis HOM05D004332 ORTHO05D005116 1.5e-07 60.1 54 57.4


User provided reference genes

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