Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 1.6e-89 332.8 175 100.0
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 9.4e-74 280.4 175 85.1
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 4.4e-71 271.6 175 82.9
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.1e-69 266.9 175 83.4
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 1.2e-68 263.5 175 80.0
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 7.2e-58 227.6 175 74.9
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 1.0e-56 223.8 175 74.3
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 3.7e-54 215.3 163 77.3
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 6.3e-54 214.5 163 76.7
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 9.1e-53 210.7 163 76.1
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 4.2e-50 201.8 183 66.1
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 2.3e-48 196.1 181 61.3
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 2.3e-48 196.1 181 61.3
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 2.3e-48 196.1 181 61.3
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 1.3e-46 190.3 182 61.0
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 1.7e-43 179.9 177 59.3
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 1.7e-43 179.9 187 58.8
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 1.7e-43 179.9 185 59.5
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 2.3e-43 179.5 183 57.4
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 1.9e-42 176.4 184 57.6
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 4.2e-42 175.3 178 56.2
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 5.6e-42 174.9 185 56.8
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 7.2e-42 174.5 186 58.1
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 9.5e-42 174.1 183 59.6
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 1.6e-41 173.3 181 58.0
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 1.6e-41 173.3 182 62.1
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 2.1e-41 172.9 182 59.9
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 2.8e-41 172.6 178 56.2
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 2.8e-41 172.6 188 60.1
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 6.1e-41 171.4 185 53.0
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 6.8e-40 167.9 186 52.7
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 8.9e-40 167.5 185 57.3
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 3.4e-39 165.6 184 59.2
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 5.7e-39 164.9 184 53.8
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 5.7e-39 164.9 184 54.3
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 5.7e-39 164.9 185 54.1
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 7.5e-39 164.5 182 57.1
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 9.8e-39 164.1 182 54.9
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 1.7e-38 163.3 185 53.0
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 1.7e-38 163.3 186 55.4
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 4.9e-38 161.8 179 54.7
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 4.9e-38 161.8 179 53.6
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 1.8e-37 159.8 183 53.0
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 3.2e-37 159.1 184 53.3
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 7.0e-37 157.9 189 52.4
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 7.0e-37 157.9 187 51.9
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 1.6e-36 156.8 187 55.1
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 2.0e-36 156.4 172 56.4
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 2.0e-36 156.4 181 55.8
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 3.5e-36 155.6 181 54.7
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 1.3e-35 153.7 185 51.9
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 2.3e-35 152.9 177 56.5
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 2.9e-35 152.5 179 53.6
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 3.9e-35 152.1 187 52.4
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 3.9e-35 152.1 176 51.1
Aqoxy1G00915 Aquilegia oxysepala HOM05D004998 ORTHO05D006104 8.6e-35 151.0 178 52.2
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 8.6e-35 151.0 184 53.8
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 1.5e-34 150.2 184 53.3
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 1.9e-34 149.8 187 51.3
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 4.3e-34 148.7 186 51.6
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 4.3e-34 148.7 186 51.6
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 5.6e-34 148.3 184 51.6
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 5.6e-34 148.3 180 51.7
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 7.3e-34 147.9 183 51.9
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 7.3e-34 147.9 185 51.4
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 9.5e-34 147.5 176 53.4
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 1.2e-33 147.1 185 54.1
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.6e-33 146.7 186 52.7
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 4.7e-33 145.2 184 49.5
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 6.2e-33 144.8 187 54.5
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 6.2e-33 144.8 176 48.3
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 1.4e-32 143.7 176 53.4
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 2.3e-32 142.9 180 47.8
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 2.3e-32 142.9 185 54.1
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 4.0e-32 142.1 175 52.0
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 5.2e-32 141.7 199 49.7
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 5.2e-32 141.7 186 50.5
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 8.9e-32 141.0 187 50.8
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 1.2e-31 140.6 184 48.9
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 1.5e-31 140.2 176 52.3
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 1.5e-31 140.2 179 51.4
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 2.6e-31 139.4 185 48.6
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 4.4e-31 138.7 176 51.7
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 5.8e-31 138.3 179 53.1
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 7.5e-31 137.9 177 52.5
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 9.8e-31 137.5 178 52.2
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 1.3e-30 137.1 199 49.2
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 4.9e-30 135.2 185 50.8
MSTRG.18567 Avicennia marina HOM05D004998 ORTHO05D006104 3.2e-29 132.5 176 51.1
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 7.8e-28 127.9 86 77.9
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 1.3e-27 127.1 194 45.4
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 1.3e-27 127.1 184 46.2
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 2.3e-27 126.3 186 50.0
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 3.0e-27 125.9 186 50.5
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 3.0e-27 125.9 190 48.4
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 3.9e-27 125.6 164 49.4
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 3.9e-27 125.6 186 45.7
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 6.6e-27 124.8 166 48.8
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 3.3e-26 122.5 191 46.6
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 7.3e-26 121.3 184 47.8
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 7.3e-26 121.3 174 49.4
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 7.3e-26 121.3 177 45.2
Peaxi162Scf00122g01415 Petunia axillaris HOM05D004998 ORTHO05D006104 9.5e-26 120.9 188 45.7
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 4.7e-25 118.6 174 49.4
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 4.7e-25 118.6 174 49.4
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 4.7e-25 118.6 174 49.4
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 6.2e-25 118.2 174 49.4
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 1.1e-24 117.5 179 46.9
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 1.8e-24 116.7 83 73.5
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 2.3e-24 116.3 175 48.0
HPP92_006623 Vanilla planifolia HOM05D004998 ORTHO05D006104 3.1e-24 115.9 224 39.7
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 8.9e-24 114.4 167 49.1
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 1.2e-23 114.0 167 48.5
Os01g0144600 Oryza sativa ssp. japonica HOM05D004998 ORTHO05D006104 1.1e-21 107.5 198 42.9
CDE08G1537 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 3.2e-21 105.9 157 45.9
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 2.1e-20 103.2 165 44.8
Cpa.g.sc81.121 Carica papaya HOM05D004998 ORTHO05D006104 2.1e-20 103.2 75 69.3
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 3.5e-20 102.4 153 45.8
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 3.9e-19 99.0 135 51.1
Nitab4.5_0006945g0010 Nicotiana tabacum HOM05D004998 ORTHO05D006104 4.3e-18 95.5 185 41.1
BolC9t58049H Brassica oleracea HOM05D004998 ORTHO05D006104 4.0e-16 89.0 171 41.5
Nitab4.5_0007132g0030 Nicotiana tabacum HOM05D004998 ORTHO05D006104 4.0e-16 89.0 173 40.5
BcaC04g19766 Brassica carinata HOM05D004998 ORTHO05D006104 1.5e-15 87.0 170 39.4
BcaB08g36255 Brassica carinata HOM05D004998 ORTHO05D006104 4.4e-15 85.5 163 41.1
Zm00001eb124480 Zea mays HOM05D004998 ORTHO05D006104 1.3e-14 84.0 82 62.2
C03p13710 Brassica napus HOM05D004998 ORTHO05D006104 1.4e-13 80.5 134 44.8
BcaC01g06521 Brassica carinata HOM05D004998 ORTHO05D006104 2.1e-12 76.6 179 39.7
FAN11G1834 Fragaria x ananassa HOM05D004998 ORTHO05D006104 3.5e-12 75.9 183 37.2
BcaB01g04577 Brassica carinata HOM05D004998 ORTHO05D006104 4.6e-12 75.5 150 40.7
FvH4_3g41460 Fragaria vesca HOM05D004998 ORTHO05D006104 4.6e-12 75.5 179 35.8
SEGI_30466 Sequoiadendron giganteum HOM05D004998 ORTHO05D006104 4.6e-12 75.5 132 40.9
Lalb_Chr01g0003571 Lupinus albus HOM05D004998 ORTHO05D006104 6.6e-11 71.6 134 37.3
Pp3c16_15780 Physcomitrium patens HOM05D004998 ORTHO05D006104 6.6e-11 71.6 192 31.8
FAN21G1361 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.2e-09 67.4 183 34.4
BcaC09g48433 Brassica carinata HOM05D004998 ORTHO05D006104 1.4e-08 63.9 207 34.8
CSS0021101 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 2.4e-08 63.2 62 54.8
BolC1t04941H Brassica oleracea HOM05D004998 ORTHO05D006104 4.0e-08 62.4 219 33.8
FAN25G2664 Fragaria x ananassa HOM05D004998 ORTHO05D006104 6.8e-08 61.6 183 32.2
Oeu002429.1 Olea europaea HOM05D004998 ORTHO05D006104 2.6e-07 59.7 56 64.3
FAN25G0408 Fragaria x ananassa HOM05D004998 ORTHO05D006104 4.4e-07 58.9 72 54.2
unitig_37.g12674 Utricularia gibba HOM05D004998 ORTHO05D006104 4.4e-07 58.9 134 36.6
SHI05935 Sapria himalayana HOM05D004998 ORTHO05D006104 1.7e-06 57.0 136 37.5
Mapoly0094s0023 Marchantia polymorpha HOM05D004998 ORTHO05D006104 2.9e-06 56.2 107 42.1


User provided reference genes

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